BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G28090.1
Length=996
Score E
Sequences producing significant alignments: (Bits) Value
Ahg481701 jgi|Araly1|481701|fgenesh2_kg.4__761__AT2G28090.1 1085 0.0
> Ahg481701 jgi|Araly1|481701|fgenesh2_kg.4__761__AT2G28090.1
Length=921
Score = 1085 bits (587), Expect = 0.0
Identities = 836/948 (88%), Gaps = 50/948 (5%)
Strand=Plus/Plus
Query 16 GTGTGTGAATGTTACCACGGAGATGTGGAGGAGGAGAAGAAAAAGAAACAGAACAATACG 75
|||||||||||||||||||||||| | |||||||||||||||||||||||||| ||||
Sbjct 13 GTGTGTGAATGTTACCACGGAGAT-T--CGGAGGAGAAGAAAAAGAAACAGAACAGTACG 69
Query 76 ACGTCGCCGGTTCA-CGTCGTTCTTAAGATTGATTTTCACTGTGACGGCTGTATCGCTAG 134
|| || | | ||| ||||||||||||| ||||||||||||||||||| ||||||||| |
Sbjct 70 CCGACGACTG-TCACCGTCGTTCTTAAGGTTGATTTTCACTGTGACGGTTGTATCGCTCG 128
Query 135 AATCGTTCGCTTATCTCGTCGTTTAGAAGGAGTTGAAACAGTGAGAGCAGATCCTGATTC 194
||||||||| |||||||||||||| ||||||||||||||||||||||||||||||| |||
Sbjct 129 AATCGTTCGATTATCTCGTCGTTTGGAAGGAGTTGAAACAGTGAGAGCAGATCCTGTTTC 188
Query 195 GAACAAGCTGACTCTGATTGGGTTTATCATGGATCCAGTGAAGATTGCTGAGAAACTTCA 254
|||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||
Sbjct 189 GAACAAGCTGACTCTGATTGGGTTTATCATGGATCCTGTGAAGGTTGCTGAGAAACTTCA 248
Query 255 GAAGAAGAGCAAGAAGAAAGTGGAGCTGATATCTCCTAAACCAAAGAAAGACACCAAAGA 314
||||||||||||||||||||||||||| ||||||||||||||||| ||||| ||||||||
Sbjct 249 GAAGAAGAGCAAGAAGAAAGTGGAGCTCATATCTCCTAAACCAAACAAAGATACCAAAGA 308
Query 315 GAACAATGAGAAAAAGGCTAATGATAAGACTCAGACTGTGGTTGCTGTGACCACAGTGGT 374
||| ||||||||||| |||||||||||||||||||||||||||||||||||||| |||||
Sbjct 309 GAAGAATGAGAAAAAAGCTAATGATAAGACTCAGACTGTGGTTGCTGTGACCACTGTGGT 368
Query 375 GTTGAAAGTGAATTGCTCTTGTGATGGTTGCATCAAGAGAATTCAAAAGGCTGTCTCTAC 434
||||| |||||||||| |||||||||||||||||||| ||| | ||| || ||||||
Sbjct 369 ACTGAAACTGAATTGCTCATGTGATGGTTGCATCAAGAGGATTTACAAGACTATCTCTAA 428
Query 435 GACCAAGGGAGTGTATCAAGTCAAAATGGACAAAGAGAAGGAAACGGTAACAGTCATGGG 494
||||| || |||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 429 AACCAAAGGTGTGTATCAAGTCAAAATGGACAAAGAGAAGGAAACGGTAACAGTAATGGG 488
Query 495 AACAATGGACATCAAGTCTGTGACAGATAATTTGAAACGCAAGCTGAAGAAAACCGTCCA 554
||| ||||| | || |||||||| || ||| ||||||| |||||||||||||| |||||
Sbjct 489 AACGATGGATGTTAAATCTGTGACTGAGAATCTGAAACGTAAGCTGAAGAAAACAGTCCA 548
Query 555 GGTCGTGCCTGagaagaagaagaagaagaaagaCAAGGACAATGCAGAGGTAAACACCAA 614
||||||||||||||||||||||||||| | | | ||| |||||||||||| || ||||||
Sbjct 549 GGTCGTGCCTGAGAAGAAGAAGAAGAA-AGATA-AAG-ACAATGCAGAGGGAATCACCAA 605
Query 615 AGTCGGGTCTCCTTGTCAACCTGGAA-ATGGATGCACTCATGGGATTGGGCCTTACAGGT 673
|||||||||||| ||||||||| | ||||||||| ||||||| |||||||||||||||
Sbjct 606 AGTCGGGTCTCCGGGTCAACCTG-ATTATGGATGCAATCATGGGCTTGGGCCTTACAGGT 664
Query 674 TCATGGAAGGCCCAATGACTGGGTTTTTCAGTGAGGAAGATCAGAGCTATTGCAGCGTTA 733
|||||||||||||||||| |||||||||||||||||| |||||||||| |||||||||||
Sbjct 665 TCATGGAAGGCCCAATGATTGGGTTTTTCAGTGAGGAGGATCAGAGCTTTTGCAGCGTTA 724
Query 734 TGTGAGTTTCGAGGTGACAAAGCATTTGGAGTTTATTACAAATATATATACTAGGAGGTA 793
||||||||||||||||||||| | | || |||||| ||||||||||
Sbjct 725 TGTGAGTTTCGAGGTGACAAA--A-----A--------CA--TATATA--CTAGGAGGTA 765
Query 794 AATAAACTAA-TAGgaaacagaaaagaaaaaagaagaagaagtaaagTCTGAAGGATATA 852
|||||||||| |||| |||| |||||||||| ||||||| |||||||||| ||||||
Sbjct 766 AATAAACTAAATAGGGAACAAAAAAGAAAAA-GAAGAAG---TAAAGTCTGACGGATATT 821
Query 853 TTGTG--ATGGTCTGTGTCACATGAGAGTAGTaaaaaaaTACACTAGTATTTTCTATTTT 910
||||| ||||||||||||||||||||||| | |||||||||||||||||||||
Sbjct 822 TTGTGTGATGGTCTGTGTCACATGAGAGTA--A------TACACTAGTATTTTCTATTTT 873
Query 911 GAGAGATAT--CAG--A--GTACGTTTTTGTGGAGAGGATCCACTTTT 952
|||| |||| ||| | ||||| |||||||||||||||||||||||
Sbjct 874 GAGAAATATTGCAGTGACAGTACGCTTTTGTGGAGAGGATCCACTTTT 921
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37017352407
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5