BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G28100.1
Length=1772
Score E
Sequences producing significant alignments: (Bits) Value
Ahg481700 jgi|Araly1|481700|fgenesh2_kg.4__760__AT2G28100.1 2326 0.0
> Ahg481700 jgi|Araly1|481700|fgenesh2_kg.4__760__AT2G28100.1
Length=1585
Score = 2326 bits (1259), Expect = 0.0
Identities = 1491/1601 (93%), Gaps = 23/1601 (1%)
Strand=Plus/Plus
Query 121 ACTAAAATCT-TTCAAGACCCATGAActctcaaatcactcttttcttcttcttcttctca 179
|||||||| | ||||||||||||||||||||||||||||| ||| ||||||||||||||
Sbjct 1 ACTAAAAT-TATTCAAGACCCATGAACTCTCAAATCACTC--TTC-TCTTCTTCTTCTCA 56
Query 180 atcctctccctctcccaaatctcaaattcaTCATCACTACTAAAACCACACCCA-TGTCC 238
||||||| |||||||||||||||||||||||| | || ||||||||||||||| | |||
Sbjct 57 ATCCTCTGTCTCTCCCAAATCTCAAATTCATCA-C-CT-CTAAAACCACACCCACT-TCC 112
Query 239 AATTTTACCCCTCCCATCCTCCCAACAGCTCCAATGGCAACTCGGATCCATGGCCATGTT 298
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 113 AATTTTACCCCTCCCATCCTCCCAACAGCTCCAATGGCAACTCGGATCCATGGCCATGTT 172
Query 299 CCTCCATTTTGGACCCAACACTTTCACCGACTCCGAATGGGGCACCGGAAAAGCTAACCC 358
||||||||| ||||| |||||||||||| ||||||||||||||||||||||||| |||||
Sbjct 173 CCTCCATTTCGGACCAAACACTTTCACCAACTCCGAATGGGGCACCGGAAAAGCCAACCC 232
Query 359 ATCCATTTTCAACCCGACCCATCTCAACGCAAGTCAATGGGTCCAAATCGCTAAAGACTC 418
|||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 233 ATCCGTTTTCAACCCGACCCGTCTCAACGCAAGTCAATGGGTCCAAATCGCTAAAGACTC 292
Query 419 AGGCTTTTCCCGCGTTATCCTCACAGCTAAGCACCATGATGGATTCTGTCTCTGGCCTAG 478
|||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct 293 AGGCTTTTCCCGCGTTATCCTCACAGCTAAGCACCACGACGGATTCTGTCTCTGGCCTAG 352
Query 479 CGAATACACTGATTACTCCGTCAAATCTAGC-CAATGGAGAAACGGAGCCGGCGATGTAG 537
||||||||| ||||||||||||||||| ||| || |||||||||||| ||||||||||||
Sbjct 353 CGAATACACAGATTACTCCGTCAAATCGAGCTCA-TGGAGAAACGGAACCGGCGATGTAG 411
Query 538 TGGCTGAACTAGCTTCTGCGGCAAAGGAAGCTGGAATTGGACTTGGTCTTTACCTTTCTC 597
|||| || |||||| ||||||| |||||||||||||||||||||||||||||||||||
Sbjct 412 TGGCGGAGCTAGCTGCTGCGGCGGCGGAAGCTGGAATTGGACTTGGTCTTTACCTTTCTC 471
Query 598 CATGGGATCGACATGAACAGTGTTATGGCAAGACATTGGAGTATAACGAGTTCTATCTGA 657
|||||||||| ||||| ||| ||||||||||||||||||||||||||||||| |||||||
Sbjct 472 CATGGGATCGTCATGATCAGAGTTATGGCAAGACATTGGAGTATAACGAGTTTTATCTGA 531
Query 658 GTCAAATGACCGAGTTACTAACAAAGTATGGAGAGATTAAGGAAGTTTGGTTAGATGGAG 717
|||||||||| |||||| |||||||||||||||||||||| |||||||||||||||||||
Sbjct 532 GTCAAATGACTGAGTTATTAACAAAGTATGGAGAGATTAAAGAAGTTTGGTTAGATGGAG 591
Query 718 CTAAAGGAGACGGAGAGAAAGATATGGAATATTTCTTTGATACTTGGTTTAGTTTGATCC 777
|||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 592 CTAAAGGAGAAGGAGAGAAAGATATGGAGTATTTCTTTGATACTTGGTTTAGTTTGATCC 651
Query 778 ATCAGCTTCAGCCTAAAGCTGTTATATTCTCTGACGCTGGTCCTGATGTCAGGTGGATTG 837
||||||||||||||||||||||||||||||| ||||| |||||||||||| |||||||||
Sbjct 652 ATCAGCTTCAGCCTAAAGCTGTTATATTCTCCGACGCCGGTCCTGATGTCCGGTGGATTG 711
Query 838 GTGATGAAGCTGGTCTAGCTGGCTCTACTTGCTGGTCACTCTTTAACAGAACCAATGCAA 897
|||| |||||||| || ||||| |||||||||||||||||||||||| |||||||||| |
Sbjct 712 GTGACGAAGCTGGACTCGCTGGGTCTACTTGCTGGTCACTCTTTAACCGAACCAATGCCA 771
Query 898 AGATTGGTGACACTGAGCCTTCGTATTCTCAAGAAGGTGATGGCTATGGGCAAGATTGGG 957
|||||||||||||||| |||| ||||||||| ||||||||| | ||||||||||||||
Sbjct 772 AGATTGGTGACACTGATCCTTTGTATTCTCAGGAAGGTGATAAATTTGGGCAAGATTGGG 831
Query 958 TACCAGCGGAATGTGATGTATCGATTCGACCCGGTTGGTTTTGGCATGCGTCGGAGTCGC 1017
|||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 832 TACCGGCGGAATGTGATGTATCGATTCGACCTGGTTGGTTTTGGCATGCGTCGGAGTCGC 891
Query 1018 CTAAACCGGCTGTTCAGCTTTTGGATATATACTATAACTCAGTTGGAAGAAACTGTCTCT 1077
|||||||||||||| ||||||||||||||||||||||||| |||||||| ||||||||||
Sbjct 892 CTAAACCGGCTGTTAAGCTTTTGGATATATACTATAACTCGGTTGGAAGGAACTGTCTCT 951
Query 1078 TCTTGCTTAATGTACCTCCTAATTCTTCAGGATTGATATCTGAGCAAGACATTAAGGTTC 1137
||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||
Sbjct 952 TCTTGCTTAATGTACCTCCTAATTCTTCAGGATTGATATCTGAACAAGACATCAAGGTTC 1011
Query 1138 TTGAAGAGTTCAGCGAAATGA-AGA-ACTCCATTTTCTCGAACAATCTCGCCCGTAAAGC 1195
|||| |||||| ||||||||| | | ||| ||||||||||| ||||||||||| |||||
Sbjct 1012 TTGAGGAGTTCCGCGAAATGACACACACT--ATTTTCTCGAATAATCTCGCCCGCAAAGC 1069
Query 1196 ATTCGTTAACTCGAGCAGTATTCGTGGCGATCAAAGTTCACAGTTTGGTCCTAAGAATGT 1255
||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1070 ATTGGTTAACTCGAGCAGTATTCGTGGCGGTCAAAGTTCACAGTTTGGTCCTAAGAATGT 1129
Query 1256 TTTGGAAGAAGGATTAGACAAGTACTGGGCGCCAGAAGAGAA-TCAAAACGAATGGGTGT 1314
|||||||||||||||||||||||||||||||||||| || || |||||| ||||||| ||
Sbjct 1130 TTTGGAAGAAGGATTAGACAAGTACTGGGCGCCAGAGGA-AAGTCAAAAGGAATGGGAGT 1188
Query 1315 TATACTTAGAGTTTAAAGATTTGGTTAGCTTCAATGTGTTGGAGATTCGAGAACCAATCC 1374
||||||||||||||||||||| |||||| |||||||||||||| ||||||||||| ||||
Sbjct 1189 TATACTTAGAGTTTAAAGATTCGGTTAGTTTCAATGTGTTGGAAATTCGAGAACCGATCC 1248
Query 1375 ATATGGGTCAAAGGATCGCATCTTTCCATCTCGAGACACGGAAGACTGGAAGCGGTGAGT 1434
| ||||||||| ||||||| ||||||||||||||||| ||||||||||||||||| | |
Sbjct 1249 AAATGGGTCAACGGATCGCGTCTTTCCATCTCGAGACGCGGAAGACTGGAAGCGGAAAAT 1308
Query 1435 GGGAGAGAGTTGTGAGCGGCACGACGGTTGGTAACAAAAGGCTTTTACGGTTTCTGAATG 1494
|||||||||||||||||||||| || || || ||||||||||||||||| |||||||| |
Sbjct 1309 GGGAGAGAGTTGTGAGCGGCACAACAGTCGGGAACAAAAGGCTTTTACGATTTCTGAA-G 1367
Query 1495 TTGTTGAGTCGCGGTCTCTAAAGCTTGTGGTGGACAAAGCGAGGACCGACCCACTTATAT 1554
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1368 --GTTGAGTCGCGGTCACTAAAGCTTGTGGTGGACAAAGCGAGGACCGACCCACTTATAT 1425
Query 1555 CGTACCTCGGACTCTACATGGATAAGTTTTCGGGTTCTAGTAGAAACACAACAAAGATAA 1614
||||||| ||| |||||||||| |||||||||| ||| ||| ||||||||||||||||||
Sbjct 1426 CGTACCTTGGAATCTACATGGACAAGTTTTCGGTTTCGAGTCGAAACACAACAAAGATAA 1485
Query 1615 CAATCACAAGGACACTAAAGGAAGAGCAGCAACTACATGATTTGTAAGAAATAACTCTCA 1674
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1486 CAATCACAAGGACACTAAAGGAAGAGCAACAACTACATGATTTGTAAGAAATAACTCTCA 1545
Query 1675 AGGATTCATCACATAAGTGTTAGG-TATTCTTGAGAATATC 1714
|||||||| |||||||||||| || | ||||||||||||||
Sbjct 1546 AGGATTCACCACATAAGTGTTTGGCT-TTCTTGAGAATATC 1585
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 66505567770
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5