BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G28105.1 Length=1003 Score E Sequences producing significant alignments: (Bits) Value Ahg900521 jgi|Araly1|900521|Al_scaffold_0004_1171 743 0.0 Ahg481700 jgi|Araly1|481700|fgenesh2_kg.4__760__AT2G28100.1 351 4e-96 > Ahg900521 jgi|Araly1|900521|Al_scaffold_0004_1171 Length=501 Score = 743 bits (402), Expect = 0.0 Identities = 469/502 (93%), Gaps = 2/502 (0%) Strand=Plus/Plus Query 303 ATGGAAGCCACTGAAACGGTTCTTTGCACGTTGCTTGCCGTCGACCTCACAGATTATTGC 362 |||||||||||||| |||||||||||| |||||||||||||||||||||| ||||||||| Sbjct 1 ATGGAAGCCACTGAGACGGTTCTTTGCTCGTTGCTTGCCGTCGACCTCACCGATTATTGC 60 Query 363 TATAGAGTTTGTTCTCGCTGCCAGAGAGTTCTTCCTTCAGATAACAATGGCTTTGCTTCT 422 || |||||||||||||||||||||||||| || |||||||||||||||||| |||||||| Sbjct 61 TACAGAGTTTGTTCTCGCTGCCAGAGAGTCCTCCCTTCAGATAACAATGGCCTTGCTTCT 120 Query 423 TCTTCATTTTGCAAATTCTGCAAATCAAAAGAACCAAAACTTCTCTATCGGATTCTCATG 482 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 121 TCTTCATTTTGCAAATTCTGCAAATCAAAAGAACCAAAACTTCTCTATCGGATTCTCATG 180 Query 483 TCAATAGCAACAGATGCATCAGTGAAAACTGTGATATGCTTTGATAGAGCTGCAACTGTT 542 || |||||||||||| ||||||||||||||||||| || |||||||||||||| |||||| Sbjct 181 TCTATAGCAACAGATACATCAGTGAAAACTGTGATCTGTTTTGATAGAGCTGCCACTGTT 240 Query 543 CTCTTTGGTTGTTCAGCTGATGAGTTCTTCCACTTCACTAAGCTCAATCCATTAGCCGCA 602 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 241 CTCTTTGGTTGTTCAGCTGATGAGTTCTTCCACTTCACTAAGCTCAATCCATTAGCCGCA 300 Query 603 TCAATGGTGAATCAGGTCTTTGATGGAGAAATGCTTAGGATGACGTTAACTCGGCCTCAA 662 |||| ||| |||||| ||||||||||||||||||| |||||||| |||||||||||||| Sbjct 301 TCAAAGGTTAATCAGATCTTTGATGGAGAAATGCTAAGGATGACATTAACTCGGCCTCAC 360 Query 663 AACCGAAACGCGCAACACATGAGAGTCG-CTTCAGTTGTTCCTCTACGATCAGGAGTTCA 721 |||||||| ||||||||||||||||| | | ||| ||||||||||| |||||||| ||| Sbjct 361 AACCGAAATGCGCAACACATGAGAGT-GACATCAATTGTTCCTCTAAGATCAGGATTTCG 419 Query 722 GCCTGCAATTGTAACCTTGAGACAGATTTGCACAAAGAATGCTTCTTTAGGGAATTTTTC 781 ||| ||||||||||| |||| ||| |||||| |||||||||||||||||||||||| ||| Sbjct 420 GCCAGCAATTGTAACTTTGACACATATTTGCTCAAAGAATGCTTCTTTAGGGAATTGTTC 479 Query 782 TACAACAAATCACAGTTCCTAA 803 ||||||||||||||| |||||| Sbjct 480 TACAACAAATCACAGCTCCTAA 501 > Ahg481700 jgi|Araly1|481700|fgenesh2_kg.4__760__AT2G28100.1 Length=1585 Score = 351 bits (190), Expect = 4e-96 Identities = 225/241 (93%), Gaps = 5/241 (2%) Strand=Plus/Plus Query 1 GCTTTTACGGTTTCTGAATGTTGTTGAGTCGCGGTCTCTAAAGCTTGTGGTGGACAAAGC 60 ||||||||| |||||||| | |||||||||||||| ||||||||||||||||||||||| Sbjct 1349 GCTTTTACGATTTCTGAA-G--GTTGAGTCGCGGTCACTAAAGCTTGTGGTGGACAAAGC 1405 Query 61 GAGGACCGACCCACTTATATCGTACCTCGGACTCTACATGGATAAGTTTTCGGGTTCTAG 120 ||||||||||||||||||||||||||| ||| |||||||||| |||||||||| ||| || Sbjct 1406 GAGGACCGACCCACTTATATCGTACCTTGGAATCTACATGGACAAGTTTTCGGTTTCGAG 1465 Query 121 TAGAAACACAACAAAGATAACAATCACAAGGACACTAAAGGAAGAGCAGCAACTACATGA 180 | |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 1466 TCGAAACACAACAAAGATAACAATCACAAGGACACTAAAGGAAGAGCAACAACTACATGA 1525 Query 181 TTTGTAAGAAATAACTCTCAAGGATTCATCACATAAGTGTTAGG-TATTCTTGAGAATAT 239 |||||||||||||||||||||||||||| |||||||||||| || | ||||||||||||| Sbjct 1526 TTTGTAAGAAATAACTCTCAAGGATTCACCACATAAGTGTTTGGCT-TTCTTGAGAATAT 1584 Query 240 C 240 | Sbjct 1585 C 1585 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 37284212826 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5