BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G28105.1
Length=1003
Score E
Sequences producing significant alignments: (Bits) Value
Ahg900521 jgi|Araly1|900521|Al_scaffold_0004_1171 743 0.0
Ahg481700 jgi|Araly1|481700|fgenesh2_kg.4__760__AT2G28100.1 351 4e-96
> Ahg900521 jgi|Araly1|900521|Al_scaffold_0004_1171
Length=501
Score = 743 bits (402), Expect = 0.0
Identities = 469/502 (93%), Gaps = 2/502 (0%)
Strand=Plus/Plus
Query 303 ATGGAAGCCACTGAAACGGTTCTTTGCACGTTGCTTGCCGTCGACCTCACAGATTATTGC 362
|||||||||||||| |||||||||||| |||||||||||||||||||||| |||||||||
Sbjct 1 ATGGAAGCCACTGAGACGGTTCTTTGCTCGTTGCTTGCCGTCGACCTCACCGATTATTGC 60
Query 363 TATAGAGTTTGTTCTCGCTGCCAGAGAGTTCTTCCTTCAGATAACAATGGCTTTGCTTCT 422
|| |||||||||||||||||||||||||| || |||||||||||||||||| ||||||||
Sbjct 61 TACAGAGTTTGTTCTCGCTGCCAGAGAGTCCTCCCTTCAGATAACAATGGCCTTGCTTCT 120
Query 423 TCTTCATTTTGCAAATTCTGCAAATCAAAAGAACCAAAACTTCTCTATCGGATTCTCATG 482
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 TCTTCATTTTGCAAATTCTGCAAATCAAAAGAACCAAAACTTCTCTATCGGATTCTCATG 180
Query 483 TCAATAGCAACAGATGCATCAGTGAAAACTGTGATATGCTTTGATAGAGCTGCAACTGTT 542
|| |||||||||||| ||||||||||||||||||| || |||||||||||||| ||||||
Sbjct 181 TCTATAGCAACAGATACATCAGTGAAAACTGTGATCTGTTTTGATAGAGCTGCCACTGTT 240
Query 543 CTCTTTGGTTGTTCAGCTGATGAGTTCTTCCACTTCACTAAGCTCAATCCATTAGCCGCA 602
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 CTCTTTGGTTGTTCAGCTGATGAGTTCTTCCACTTCACTAAGCTCAATCCATTAGCCGCA 300
Query 603 TCAATGGTGAATCAGGTCTTTGATGGAGAAATGCTTAGGATGACGTTAACTCGGCCTCAA 662
|||| ||| |||||| ||||||||||||||||||| |||||||| ||||||||||||||
Sbjct 301 TCAAAGGTTAATCAGATCTTTGATGGAGAAATGCTAAGGATGACATTAACTCGGCCTCAC 360
Query 663 AACCGAAACGCGCAACACATGAGAGTCG-CTTCAGTTGTTCCTCTACGATCAGGAGTTCA 721
|||||||| ||||||||||||||||| | | ||| ||||||||||| |||||||| |||
Sbjct 361 AACCGAAATGCGCAACACATGAGAGT-GACATCAATTGTTCCTCTAAGATCAGGATTTCG 419
Query 722 GCCTGCAATTGTAACCTTGAGACAGATTTGCACAAAGAATGCTTCTTTAGGGAATTTTTC 781
||| ||||||||||| |||| ||| |||||| |||||||||||||||||||||||| |||
Sbjct 420 GCCAGCAATTGTAACTTTGACACATATTTGCTCAAAGAATGCTTCTTTAGGGAATTGTTC 479
Query 782 TACAACAAATCACAGTTCCTAA 803
||||||||||||||| ||||||
Sbjct 480 TACAACAAATCACAGCTCCTAA 501
> Ahg481700 jgi|Araly1|481700|fgenesh2_kg.4__760__AT2G28100.1
Length=1585
Score = 351 bits (190), Expect = 4e-96
Identities = 225/241 (93%), Gaps = 5/241 (2%)
Strand=Plus/Plus
Query 1 GCTTTTACGGTTTCTGAATGTTGTTGAGTCGCGGTCTCTAAAGCTTGTGGTGGACAAAGC 60
||||||||| |||||||| | |||||||||||||| |||||||||||||||||||||||
Sbjct 1349 GCTTTTACGATTTCTGAA-G--GTTGAGTCGCGGTCACTAAAGCTTGTGGTGGACAAAGC 1405
Query 61 GAGGACCGACCCACTTATATCGTACCTCGGACTCTACATGGATAAGTTTTCGGGTTCTAG 120
||||||||||||||||||||||||||| ||| |||||||||| |||||||||| ||| ||
Sbjct 1406 GAGGACCGACCCACTTATATCGTACCTTGGAATCTACATGGACAAGTTTTCGGTTTCGAG 1465
Query 121 TAGAAACACAACAAAGATAACAATCACAAGGACACTAAAGGAAGAGCAGCAACTACATGA 180
| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1466 TCGAAACACAACAAAGATAACAATCACAAGGACACTAAAGGAAGAGCAACAACTACATGA 1525
Query 181 TTTGTAAGAAATAACTCTCAAGGATTCATCACATAAGTGTTAGG-TATTCTTGAGAATAT 239
|||||||||||||||||||||||||||| |||||||||||| || | |||||||||||||
Sbjct 1526 TTTGTAAGAAATAACTCTCAAGGATTCACCACATAAGTGTTTGGCT-TTCTTGAGAATAT 1584
Query 240 C 240
|
Sbjct 1585 C 1585
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37284212826
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5