BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G28110.1
Length=1623
Score E
Sequences producing significant alignments: (Bits) Value
Ahg481698 jgi|Araly1|481698|fgenesh2_kg.4__758__AT2G28110.1 2196 0.0
> Ahg481698 jgi|Araly1|481698|fgenesh2_kg.4__758__AT2G28110.1
Length=1547
Score = 2196 bits (1189), Expect = 0.0
Identities = 1434/1550 (93%), Gaps = 25/1550 (2%)
Strand=Plus/Plus
Query 23 TAGTCTTCATCAATCTTTCTCCACCTTCTTCTATTCCTTAATCTCCACTTTATCTCCCAA 82
||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 1 TAGTCTTCATCAATCTTTCTCCAACTTCTGCTATTCCTTAATCTCCACTTTATCTCCCAA 60
Query 83 A--C----CCGAAAACTCCTCTTCACCAACTT-AAACCCTATTAACTAATCCCAACAATC 135
| | ||||||||||||||||| |||||| ||||||| |||||||||||||||||||
Sbjct 61 ACCCGAATCCGAAAACTCCTCTTCAACAACTTAAAACCCTTTTAACTAATCCCAACAATC 120
Query 136 AGATGTTTCGAATTCAACAACCAGCTCAGGCCATAAGATTCATCCCGG-AGAAACAAGAA 194
||||| ||||||||||||||||| ||| | ||||||||||||| |||| | |||||||||
Sbjct 121 AGATGATTCGAATTCAACAACCAACTCCGACCATAAGATTCATTCCGGCA-AAACAAGAA 179
Query 195 CGATGACAACACATAAACATAGAAGAACAGAGAAAAATCTCTGTTTTAAGCAATACTACA 254
| |||| |||||| ||||| |||||||||||||||| ||||||||| || || |||||||
Sbjct 180 CCATGATAACACAGAAACAAAGAAGAACAGAGAAAAGTCTCTGTTTAAAACATTACTACA 239
Query 255 AATGGATCCTCTGTTTTATCCTCACTCTCTAtttttttGCTTCCTTCTTTGTCGACCATG 314
||||| ||||||||||| |||| ||||| |||||| ||||||||||||||||||||||||
Sbjct 240 AATGGTTCCTCTGTTTTTTCCTTACTCTTTATTTTCTTGCTTCCTTCTTTGTCGACCATG 299
Query 315 ATCAAGATC---AT--AG-----A--TCTTCTACTTCCATATCAAAGCATCTTCTTACTA 362
||||||||| || || | |||||| ||||| |||||| | |||||||||||
Sbjct 300 ATCAAGATCAAGATCAAGATCAAAGGTCTTCTTCTTCCCGATCAAACCCTCTTCTTACTA 359
Query 363 AC-CATAAACCTAAGCTTTTCGCTTCTCGTGCCATGTTTGAATCTAAAATCCATGATCAC 421
|| | |||||| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 ACTC-TAAACCCAAACTTTTCGCTTCTCGTGCCATGTTTGAATCTAAAATCCATGATCAC 418
Query 422 AAACTTGGGTTTACCTCTCAACAACCTAACATCAA-AACAGACGTATTCAACAATTTGAA 480
|||||||||||| || |||||| || ||||| || |||||| |||||||||||||||||
Sbjct 419 AAACTTGGGTTTGCCCCTCAACGTCCCAACAT-AAGAACAGATGTATTCAACAATTTGAA 477
Query 481 AATCTACGTCTATGACTTACCTTCAAAGTTCAACAAAGACTGGTTAGCCAATGATAGATG 540
|||||||||||||||||| || ||||||||||||||||||||||||||||||||||| ||
Sbjct 478 AATCTACGTCTATGACTTGCCGTCAAAGTTCAACAAAGACTGGTTAGCCAATGATAGGTG 537
Query 541 CACCAACCACCTCTTTGCCGCGGAAGTGGCTCTCCATAAGGCGTTTCTCAGCCTCGAAGG 600
| ||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct 538 TAGCAACCACCTCTTTGCCGCGGAGGTGGCTCTCCACAAGGCGTTTCTCAGCCTCGAAGG 597
Query 601 AGATGTAAGGACGGAAGATCCGTATGAAGCCGATTTCTTCTTTGTCCCTGTCTATGTCTC 660
||| || |||| |||||||| || |||||||||||||||||||| ||||||||||||||
Sbjct 598 AGACATACGGACAGAAGATCCATACGAAGCCGATTTCTTCTTTGTTCCTGTCTATGTCTC 657
Query 661 TTGCAACTTCAGCACCATTAATGGCTTTCCAGCGATTGGCCATGCACGATCACTCATCAA 720
|||||||||||||||||| |||||||||||||| ||||| || || ||| ||||||||||
Sbjct 658 TTGCAACTTCAGCACCATCAATGGCTTTCCAGCTATTGGTCACGCGCGAACACTCATCAA 717
Query 721 TGACGCGATAAAGCTCGTCTCGACTCAATACCCTTTTTGGAACCGAACCAGTGGCTCTGA 780
||||||||| ||| ||||||||||||||||||| |||||||| |||| | |||||||||
Sbjct 718 TGACGCGATTAAGTTCGTCTCGACTCAATACCCGTTTTGGAATCGAAATAATGGCTCTGA 777
Query 781 TCATGTCTTCACGGCCACACACGACTTTGGCTCTTGCTTCCACACCATGGAGGATAGAGC 840
|| |||||||| |||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 778 CCACGTCTTCACCGCCACACATGACTTTGGCTCTTGCTTCCACACCATGGAGGATAGAGC 837
Query 841 TATTGCTGATGGAGTACCAAtttttttGAGAAACTCTATAATTTTGCAAACATTTGGTGT 900
||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||
Sbjct 838 AATTGCTGATGGAGTACCAAAGATTTTGAGAAACTCTATAGTTTTGCAAACATTTGGTGT 897
Query 901 TACTTTTAACCATCCATGCCAAGAGGTAGAGAACGTGGTGATACCACCGTACATCTCACC 960
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 898 TACTTTTAACCATCCATGCCAAGAGGTAGAGAACGTGGTGATACCACCGTACATCTCACC 957
Query 961 GGAAAGTTTACACAAGACTCAAAAGAATATTCCGGTAACTAAAGAACGAGACATTTGGGt 1020
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 958 GGAAAGTTTACACAAGACTCTAAAGAATATTCCGGTAACTAAAGAACGAGACATTTGGGC 1017
Query 1021 ttttttCCGTGGCAAGATGGAACTTCATCCCAAAAACATCAGTGGACGCTTCTATAGCAA 1080
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1018 TTTTTTCCGCGGCAAGATGGAACTTCATCCCAAAAACATCAGTGGACGCTTCTATAGCAA 1077
Query 1081 GCGTGTAAGGACGAATATATGGCGGAGTTACGGTGGTGACCGGAGGTTTTATCTCCAACG 1140
||| ||| |||||||||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct 1078 GCGAGTACGGACGAATATATGGCGAAGTTACGGTGGTGACCGGAGGTTTTATCTTCAACG 1137
Query 1141 GCAAAGATTTGCCGGTTACCAGTCAGAAATAGCTCGTTCTGTTTTCTGTTTATGTCCTCT 1200
|||| ||||| |||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1138 GCAACGATTTTCCGGTTACCAGTCAGAAATAGCTCGTTCTGTTTTCTGTTTGTGTCCTCT 1197
Query 1201 CGGGTGGGCACCGTGGAGCCCAAGACTTGTTGAATCGGTGGCTCTTGGCTGTGTTCCGGT 1260
|||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct 1198 CGGGTGGGCACCGTGGAGCCCAAGACTTGTTGAATCGGTGGCTCTTGGCTGTGTACCAGT 1257
Query 1261 GATTATAGCCGACGGGATTCGTTTGCCGTTCCCTTCCACCGTACGTTGGCCGGATATTTC 1320
|||||||||||| ||||| |||||||||||||||||| |||| |||||||||||||||||
Sbjct 1258 GATTATAGCCGATGGGATCCGTTTGCCGTTCCCTTCCGCCGTGCGTTGGCCGGATATTTC 1317
Query 1321 GCTCACGGTGGCGGAGAGAGACGTTGGAAAGCTAGGGGATATTTTGGAACACGTGGCGGC 1380
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1318 GCTCACGGTGGCAGAGAGAGACGTTGGAAAGCTAGGGGATATTTTGGAACACGTGGTGGC 1377
Query 1381 TACTAATTTGTCAGTCATACAGAGAAACTTGGAGGATCCGTCTGTTAGGCGGGCCCTTAT 1440
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1378 AACTAATTTGTCAGTCATACAGAGAAACTTGGAGGATCCGTCTGTTAGGCGGGCCCTTAT 1437
Query 1441 GTTTAATGTTCCTTCAAGAGAGGGAGATGCCACGTGGCAAGTTTTGGAGGCTTTGTCAAA 1500
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1438 GTTTAATGTTCCTTCAAGAGAGGGAGATGCCACGTGGCAAGTTTTGGACGCTTTGTCAAA 1497
Query 1501 GAAATTGAATAGGTCTGTTAGAAGGTCAAACTCTTTCTTGTAAACCAATA 1550
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1498 GAAATTGAATAGGTCTGTTAGAAGGTCAAACTCTTTCTTGTAAACCAATA 1547
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60830121265
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5