BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G28120.1
Length=2052
Score E
Sequences producing significant alignments: (Bits) Value
Ahg481697 jgi|Araly1|481697|fgenesh2_kg.4__757__AT2G28120.1 3090 0.0
> Ahg481697 jgi|Araly1|481697|fgenesh2_kg.4__757__AT2G28120.1
Length=2016
Score = 3090 bits (1673), Expect = 0.0
Identities = 1914/2029 (94%), Gaps = 21/2029 (1%)
Strand=Plus/Plus
Query 32 TTACATATAAACAAATTCCCCTATTCCTCTGATCTACTTTATAGCCCTGAGACTCTCTTT 91
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1 TTACATATAAACAAATTCCTCTATTCCTCTGATCTACTTTATAGCCCTGAGACTCTCTTT 60
Query 92 CTGTACTCTAATCATTTATCTAGCTCTCTCA-----TTCTCTTATTCTGGATCAGCCAAG 146
||||||||||||||||||||| |||||| | ||||||||||||||||||||||||
Sbjct 61 CTGTACTCTAATCATTTATCTCTCTCTCTTAGTTTGTTCTCTTATTCTGGATCAGCCAAG 120
Query 147 TTTCTCCATTTCTCAATCAAGAAAATCTTG-AA-ATACTCAAATCTTTTCAAGATTCACT 204
|||||||||||||||||||||||||||||| || | ||||||||||||||||||||||||
Sbjct 121 TTTCTCCATTTCTCAATCAAGAAAATCTTGAAAGAGACTCAAATCTTTTCAAGATTCACT 180
Query 205 TTCAAAGATATCTTGATAATAGCCTCAAACTCTGGTTTCAAAGATGGGAAACGACGAGAC 264
|||||||||||||||||| |||||||| |||| |||||| ||||||||||||||||||||
Sbjct 181 TTCAAAGATATCTTGATATTAGCCTCACACTCGGGTTTCCAAGATGGGAAACGACGAGAC 240
Query 265 CGTACGATTCTTGATTCACTTCTTCAATGGAAGATGGTTCATGGTGTTTGCTTCGTTTCT 324
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||
Sbjct 241 CGTACGATTCTTGATTCACTTCTTTAATGGAAGATGGTTCATGGTGTTTGCTTCGTTCCT 300
Query 325 CATCATGGCTTGCGCTGGAGCCACCTACCTTTTTGGTACTTACTCTAAAGATATCAAATC 384
|||||||||||||||||||||||| || ||||| || |||||||||||||||||||||||
Sbjct 301 CATCATGGCTTGCGCTGGAGCCACTTATCTTTTCGGGACTTACTCTAAAGATATCAAATC 360
Query 385 TACACTTGGTTACGATCAGACCACGTTGAACCTCTTAGGTTTCTTTAAAGATCTTGGAGC 444
||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 361 TACACTTGGTTACGACCAGACAACGTTGAACCTCTTAGGTTTCTTTAAAGATCTTGGAGC 420
Query 445 AAACGTTGGTGTCTTGTCCGGTCTAATAGCTGAGGTCACACCGACTTGGTTCGTCCTCAC 504
|||||||| ||||||||||| || ||||| |||||||||||||||||||||||||||||
Sbjct 421 TAACGTTGGAGTCTTGTCCGGACTCATAGCAGAGGTCACACCGACTTGGTTCGTCCTCAC 480
Query 505 CATTGGCTCGGCGATGAACTTCGTCGGTTACTTTATGATCTGGCTTACCGTAACCGGCAA 564
||||||||||||||||||||||||||||||||| ||||| ||||||||||| || |||||
Sbjct 481 CATTGGCTCGGCGATGAACTTCGTCGGTTACTTCATGATTTGGCTTACCGTCACAGGCAA 540
Query 565 AGTCGCTAAGCCAAAGGTTTGGCAAATGTGTCTTTATATTTGTATAGGAGCCAACTCGCA 624
||| || ||||||||||||||||||||||||||||||||||| |||||||| ||||||||
Sbjct 541 AGTTGCGAAGCCAAAGGTTTGGCAAATGTGTCTTTATATTTGCATAGGAGCTAACTCGCA 600
Query 625 GAACTTTGCAAACACAGGAGCTTTGGTTACTTGTGTTAAGAATTTCCCTGAGAGCAGAGG 684
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 GAACTTTGCAAACACCGGAGCTTTGGTTACTTGTGTTAAGAATTTCCCTGAGAGCAGAGG 660
Query 685 AGTTATGCTTGGTTTGCTTAAGGGTTATGTTGGACTAAGTGGTGCAATCTTCACGCAGCT 744
|||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||
Sbjct 661 AGTTATGCTTGGTTTGCTTAAGGGTTATGTTGGACTAAGTGGCGCAATCTTGACGCAGCT 720
Query 745 TTATTTTGCGATCTATGGACACGATTCCAAGTCTTTGATCTTGTTGATAGCATGGTTGCC 804
||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct 721 TTATTTTGCGATCTATGGACACGATTCAAAGTCTTTGATTTTGTTGATAGCATGGTTGCC 780
Query 805 TGCTGCGGTTTCTCTTGTGTTTGTGTATTTGATAAGAGAGAAGAAGGTTGTGAGGCAGAG 864
||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct 781 TGCTGCGGTTTCTCTCGTATTTGTGTATTTGATAAGAGAGAAGAAGGTTGTGAGGCAGAG 840
Query 865 GAATGAGCTTAGTGTGTTTTACCAATTCCTTTATATTTCTATATTCTTGGCTTTGTTCCT 924
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 841 GAATGAGCTCAGTGTGTTTTACCAATTCCTTTATATTTCTATATTCTTGGCTTTGTTCCT 900
Query 925 TATGGCAATGAACATTGCTGAGAAGCAAGTTCATTTCTCAAAAGCCGCTTATGCGGCTAG 984
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct 901 TATGGCAATGAACATTGCTGAGAAGCAAGTTCATTTCTCGAAAGCCGCTTATGCGGCAAG 960
Query 985 CGCTACGATATGTTGTGCTTTGCTTTTTGTGCCTCTTACGGTTTCCGTTAAGCAAGAGCT 1044
||||||||||||||||| ||||||||||||||||||||||||||| ||||| |||||| |
Sbjct 961 CGCTACGATATGTTGTGTTTTGCTTTTTGTGCCTCTTACGGTTTCGGTTAAACAAGAGAT 1020
Query 1045 TGAAGTTTGGAACATGATGAAGTTACCTATCGAAGAGCCAAGCGAGGTCAAGGTTGAGAA 1104
|||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1021 GGAAGTTTGGAACATGAAGAAGTTACCTATCGAAGAGCCGAGCGAGGTCAAGGTTGAGAA 1080
Query 1105 ACCAAAGAAAGAACTTGATCTTGATCAGGACAAAGCCGCCAAGGTGAATGGAGAAGAGAA 1164
||| ||||||||||||||||||| |||||||||| ||||||||||| |||||||||||||
Sbjct 1081 ACCTAAGAAAGAACTTGATCTTGTTCAGGACAAAACCGCCAAGGTGGATGGAGAAGAGAA 1140
Query 1165 GGAGACAAAATCTTGTTTCTCGACGGTGTTTTCTCCACCGCCAAGAGGGGAAGATTACAC 1224
|||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1141 GGAGACGAAATCTTGTTTCTTGACGGTGTTTTCTCCACCGCCAAGAGGGGAAGATTACAC 1200
Query 1225 AATATTACAAGCATTGTTAAGCACCGACATGATAATCCTATTTGTCGCGACATTCTGTGG 1284
|||||| ||||||||| | || |||||||||||||| |||||||| ||||||||||||||
Sbjct 1201 AATATTGCAAGCATTGCTCAGTACCGACATGATAATACTATTTGTGGCGACATTCTGTGG 1260
Query 1285 TTTAGGATCGAGCTTGACTGCCGTAGACAACCTCGGGCAGATAGGAGAATCCCTCGGCTA 1344
||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct 1261 TTTAGGATCGAGCTTGACTGCCGTAGACAACCTCGGGCAAATAGGAGAATCTCTCGGCTA 1320
Query 1345 CCCGAACCACACGGTTAGTTCCTTTGTGTCTCTAGTCAGCATATGGAACTACTTCGGTCG 1404
|||||||||||||||||| ||||||||||||||||||||||||||||| ||||| |||||
Sbjct 1321 CCCGAACCACACGGTTAGCTCCTTTGTGTCTCTAGTCAGCATATGGAATTACTTTGGTCG 1380
Query 1405 AGTGTTCTCTGGCT-TTGTCTCGGAATACTTACTTGCAAAGTATAAATTACCCCGGCCGC 1463
|||||||| || | ||||||| |||||||| ||||| |||||||| |||||||||||||
Sbjct 1381 TGTGTTCTCAGG-TGTTGTCTCAGAATACTTGCTTGCCAAGTATAAGTTACCCCGGCCGC 1439
Query 1464 TTATGATGACATTAGTCCTCTTATTGAGTTGTGCTGGCCACCTTCTCATCGCGTTCCCGG 1523
|||||||||||||||||||||||||||||||||| || |||||||||||||| |||||||
Sbjct 1440 TTATGATGACATTAGTCCTCTTATTGAGTTGTGCGGGTCACCTTCTCATCGCCTTCCCGG 1499
Query 1524 TACCAGGCTCGGTATATATAGCGTCAATTCTAATGGGATTCTCTTTCGGTGCACAACTTC 1583
||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||
Sbjct 1500 TACCAGGCTCGGTATATATAGCGTCGATTCTAATGGGATTCTCTTTTGGTGCACAACTTC 1559
Query 1584 CTCTGCTCTTTGCCATCATCTCAGAACTTTTTGGACTCAAGTACTACTCTACATTGTTCA 1643
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1560 CTCTGCTCTTTGCCATCATCTCAGAACACTTTGGACTCAAGTACTACTCTACATTGTTCA 1619
Query 1644 ATTGTGGACAACTTGCTAGCCCGCTCGGGTCTTACATCCTGAACGTTCGTGTCACGGGAA 1703
||||||||||||||||||||||||||||||| |||||||| ||||| || ||||||||||
Sbjct 1620 ATTGTGGACAACTTGCTAGCCCGCTCGGGTCATACATCCTAAACGTCCGCGTCACGGGAA 1679
Query 1704 TGCTTTACGATAAAGAGGCCTTGAAGCAACTAACGGCTCGAGGGCTAACCCGAAAAGACG 1763
|||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1680 TGCTTTACGATAGAGAGGCCTTGAAGCAACTAACGGCTCGAGGGCTAACTCGAAAAGACG 1739
Query 1764 TAAAGGACTTGACTTGCTTAGGAAGTCAATGTTATAAGCTGCCGTTTCTGATTTTGGCAG 1823
|||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||
Sbjct 1740 TAAAGGACTTGACTTGCTTAGGAAGTCAATGTTATAAGCTACCGTTTGTGATTTTGGCAG 1799
Query 1824 CAGTAACGTTTTTTGGAGCACTTGTATCTTTGGGGCTAGCGATAAGGACGAGAGAGTTTT 1883
|||||||||| |||||||||||||| |||||||| |||||||||||||||||||||||||
Sbjct 1800 CAGTAACGTTCTTTGGAGCACTTGTGTCTTTGGGTCTAGCGATAAGGACGAGAGAGTTTT 1859
Query 1884 ACAAAGGTGATATTTACAAGAAGTTTAGGGAGAGTCCTGAGTCCGAGTCTGAATTAGTTC 1943
||||||||||||||||||||||||||||||||||| |||| ||||||||||| || |
Sbjct 1860 ACAAAGGTGATATTTACAAGAAGTTTAGGGAGAGTACTGAATCCGAGTCTGA-TT----C 1914
Query 1944 CTGATTCAAGAAAAGCTGTTGAATTTGTTGGTAAATAATTATCACACAAATTGTTTTTGT 2003
| | ||||||||||||||||||||||||||||||||||| ||||||||| |||||
Sbjct 1915 ---A---A-GAAAAGCTGTTGAATTTGTTGGTAAATAATTATCATACAAATTGTATTTGT 1967
Query 2004 TACTTGAATCATAGTTGAATAAATTAATAGAAAAGAGCCGTTTAATTTC 2052
|||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1968 AACTTGAATTATAGTTGAATAAATTAATAGAAAAGAGCCGTTTAATTTC 2016
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 77170836370
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5