BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G28130.1
Length=1744
Score E
Sequences producing significant alignments: (Bits) Value
Ahg481696 jgi|Araly1|481696|fgenesh2_kg.4__756__AT2G28130.1 2350 0.0
> Ahg481696 jgi|Araly1|481696|fgenesh2_kg.4__756__AT2G28130.1
Length=1678
Score = 2350 bits (1272), Expect = 0.0
Identities = 1546/1675 (92%), Gaps = 32/1675 (2%)
Strand=Plus/Plus
Query 25 TTGGCTCTTTTAAACACTTG-CCCTTATT-CGCGCTTCCCAAAGCTGCAAAAGTTTCAAC 82
||| |||||||||||||||| ||||| || ||||||||||||||||||||||| ||||||
Sbjct 1 TTGACTCTTTTAAACACTTGCCCCTT-TTGCGCGCTTCCCAAAGCTGCAAAAG-TTCAAC 58
Query 83 TTTTTAAGGGTTTCGTCTGAAGGAGAAGGAGCTTGAATCAGCCCCAAGTTAGAG--AGAA 140
||||||||||||||||||||||||||| ||||||||| |||||||||| |||| ||||
Sbjct 59 -TTTTAAGGGTTTCGTCTGAAGGAGAAGAAGCTTGAATAAGCCCCAAGTCAGAGAAAGAA 117
Query 141 CTCAACGATGGATTTGGATGGACCTCTTGATTTCGAGAACGAAGATCCTCTCGTTAACCC 200
| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 118 GTTAACGATGGATTTGGATGGACCTCTTGATTTCGAGAACGAAGATCCTCTGGTTAACCC 177
Query 201 TCCAACGATAATTGAAAAAAGGAAGAAAGTTATTGGTTTGGACGATCTTCTCTCTGATTT 260
|||| ||| |||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 178 TCCACCGACAATTGAAAAAAGGAAGAAAGTTATTGGTTTGGACGATCTTCTATCTGATTT 237
Query 261 TTACAAAGAGAAGAGTAAGGTTATAGACAAGGTAAACAAGAAACGCAAAGTGTCTAAGGT 320
||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 238 TTATAAAGAGAAGAGTAAGGTTATAGACAAGGTAAACAAGAAACGCAAAGTCTCTAAGGT 297
Query 321 TTATCATTCGGATGATGATGAACAAGGTCAAGTAGATAAGCTTTCTCAATGTGTTGTTGA 380
||||||||||||||||||||||||||| ||||||||| ||||||||||||||||| |||
Sbjct 298 TTATCATTCGGATGATGATGAACAAGGCCAAGTAGATTTGCTTTCTCAATGTGTTGATGA 357
Query 381 GTGTCAGAATCAGATGAATGAGATAGCTGATGAAGAGGAGAATCAAGAGTGGGGATTATC 440
||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||
Sbjct 358 GTGTCAGAATCAGATGAATGAGATAGCTGGTGAAGAGGAGAATCAAGATTGGGGATTATC 417
Query 441 TATGTTTGGAGATCAGAAAACTCCAATACCTTCACTGCTTGTTGATCTCGATAGTTGCTG 500
| |||||||||||||||||| |||||||||||||| || |||||||||||||||||||||
Sbjct 418 TTTGTTTGGAGATCAGAAAATTCCAATACCTTCACCGCATGTTGATCTCGATAGTTGCTG 477
Query 501 CTTGTTGAAAGAGTTTATGAATAATCAGTTAAATTTGGTGGTGGGTCTTACCGTTGATGA 560
|||||||||||||||||||| |||||||||||||||||| |||||||||||||| |||||
Sbjct 478 CTTGTTGAAAGAGTTTATGAGTAATCAGTTAAATTTGGTCGTGGGTCTTACCGTAGATGA 537
Query 561 AGGAACAACTTTTATTGAAGGCTTGCTGGTTAACGGCTGGCTCACAAGACTGATCATGAC 620
||||||||||||| ||||||| ||||||||||| ||||||||||||||||||||| ||||
Sbjct 538 AGGAACAACTTTTCTTGAAGGATTGCTGGTTAATGGCTGGCTCACAAGACTGATCTTGAC 597
Query 621 TTGTG-GACGTGTGGAAAAGTTCATTTGCAAGTGGACGCTTAATATATTGTTGTATTCAT 679
||||| | ||||||||||||||||| |||||||||||||||||||| |||||||||||||
Sbjct 598 TTGTGCG-CGTGTGGAAAAGTTCATATGCAAGTGGACGCTTAATATTTTGTTGTATTCAT 656
Query 680 CTAAAGAAGATCTAAGATCATCTGCTTGTGACTTTTGGTGTTCCATACTGTTATCACAAA 739
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 657 CTAAAGAAGATCTAAGATCATCTGCTTGTGACTTTTGGTGTTCCATACTGTTATCACAAA 716
Query 740 ACAAGGTTAATGGAGCTTCTGTTGAGATTTACTGGCTTCCTAACTATCAGGAACTTAAAG 799
||||||||||||||||| ||||||| ||||||||||| ||||||||||||||||||||||
Sbjct 717 ACAAGGTTAATGGAGCTCCTGTTGAAATTTACTGGCTGCCTAACTATCAGGAACTTAAAG 776
Query 800 AAGCTCTTGAATCATATGGGTTCAGAATTAGTCTGTCACACTCACAAGACGTTGAACTAG 859
||||||||||||||||||| |||||||||||||||||||| | | || | |||||||
Sbjct 777 AAGCTCTTGAATCATATGGCTTCAGAATTAGTCTGTCACA---AGATGA--T-GAACTAG 830
Query 860 CAGAAGCGGATTCTGAGTGTCAAGGTCCTCCACAGAATATTAGAGCTTGGTTAACATTGG 919
|||| ||||||||||| | ||||||||||||||||||||||||||||||| | ||| |||
Sbjct 831 CAGACGCGGATTCTGACTCTCAAGGTCCTCCACAGAATATTAGAGCTTGGCTCACACTGG 890
Query 920 TTACAACTTGTTGTCAATTTAGGTGTAAAAAACCTATTTTTACCACTTCACAAGTTGAAC 979
| ||||||||||||||| ||||||||||||| || |||||| |||||||||||||||||
Sbjct 891 TCACAACTTGTTGTCAAATTAGGTGTAAAAATCCCATTTTTTCCACTTCACAAGTTGAAG 950
Query 980 AGATAGCCGAAATCCTTGTATCGTTGCTCTTAGATCGCAGTCTTCTCGGTCTTTCAATTC 1039
||||||| ||||||||||||| | |||| ||||||||| ||||||| ||||||||| |||
Sbjct 951 AGATAGCGGAAATCCTTGTATTGCTGCTATTAGATCGCGGTCTTCTAGGTCTTTCACTTC 1010
Query 1040 TCTTACAAGAGTGCTTAATATCTGTTATTGGATCCTTCAAAGAGGAAGAATGGATTTCAA 1099
|||||||||| |||||||||||||||||||||||||| ||||||||||||||| ||||||
Sbjct 1011 TCTTACAAGAATGCTTAATATCTGTTATTGGATCCTTTAAAGAGGAAGAATGGGTTTCAA 1070
Query 1100 GCTGCAAGAAAATAGCTAACTCTCTTGCTTCCAGAGTACCTCAAGACATAAATTGTTTGA 1159
|||||||| ||||||| |||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1071 GCTGCAAGGAAATAGCAAACTCTCTTGCTTCCAGAGTACCTCAAGACATGAATTGTTTGA 1130
Query 1160 GGGTAGTGGAATCTGTATCAGGTGTTGATGCTCGAAGCAAGCATCTGAGAAGTTCCATTG 1219
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1131 GGGTAGTGGAATCTGTATCAGGTGTTGATGCTCGAAGCAAGCATCTGAGAAGTTCCATCG 1190
Query 1220 CACATCAAATGCTTGTTGTTTTACTTGATCATAAGGACAGCGACGAAAATTTGCTGAGCT 1279
||||||||||||| ||||||||||||||||| ||||||||||||||||||||| ||||||
Sbjct 1191 CACATCAAATGCTCGTTGTTTTACTTGATCAGAAGGACAGCGACGAAAATTTGTTGAGCT 1250
Query 1280 CGCTGATGTCTATCAATGTGAAGGAGAGAAGTTGTAACCTTTTCAAAA-TGTACATTTTC 1338
||||||||||||||||||||||||||| |||||||||||| ||||||| | ||||||| |
Sbjct 1251 CGCTGATGTCTATCAATGTGAAGGAGAAAAGTTGTAACCTATTCAAAACT-TACATTT-C 1308
Query 1339 C-TGGTATTGGCTGAGAACTGGCTCTTCTCTAGTACATTGGTAGAAGCAAAGCCTGTACT 1397
| |||||||||| ||||||||||||||||| |||||||||||||||| |||||| |||||
Sbjct 1309 CGTGGTATTGGCGGAGAACTGGCTCTTCTCAAGTACATTGGTAGAAGAAAAGCCGGTACT 1368
Query 1398 GAGGGACATGTGGGCTGTGTTTCTCAGAAACTGTTCTTGTCAGATCAACAGCACCGATCT 1457
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1369 GAGGGACATGTGGGCTGTGTTTCTCAGAAACTGTTCTTGTCAGATCAATAGCACCGATCT 1428
Query 1458 TCGGTCTTATGCATCAAAAGTTCGAACCAGAGCCGCCTATCTTCTTCAAGGTTGCAGCAG 1517
||||||||||||||| |||||||| |||| ||||||||||||||||||||| ||||||||
Sbjct 1429 TCGGTCTTATGCATCGAAAGTTCGTACCAAAGCCGCCTATCTTCTTCAAGGATGCAGCAG 1488
Query 1518 CAATTGAAGGAGTACAACTGAAACTTCAGCAGTAGTTTGGTTTG-C-TGATTAAAATTTC 1575
|||||||||| ||||| ||||||||| ||||||||||| | | | | | ||||| ||||
Sbjct 1489 CAATTGAAGGGGTACATCTGAAACTTTAGCAGTAGTTTCGCT-GACATTATTAA--TTTC 1545
Query 1576 GCTA-A--TATAAATGT-CTTTATAGAAGTATTTTTACTACTATAAATCCATTAAAACAA 1631
|| | | | | ||| ||| | ||||| |||||||||| || || |||| |||| ||
Sbjct 1546 --TAGAGGTTTTACTGTACTTG-TCGAAGTGTTTTTACTACGATTAACCCATAAAAATAA 1602
Query 1632 AATTTATGTCTTAACCCCTATTTTATTCTCGCAAAATTCATAGTGACGTAACAAA 1686
|||||||||| |||| |||||||||||||||||||||||||||||||||||||
Sbjct 1603 AATTTATGTCATAACTG-TATTTTATTCTCGCAAAATTCATAGTGACGTAACAAA 1656
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 65439040910
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5