BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G28140.1
Length=955
Score E
Sequences producing significant alignments: (Bits) Value
Ahg481695 jgi|Araly1|481695|fgenesh2_kg.4__755__AT2G28140.1 1229 0.0
> Ahg481695 jgi|Araly1|481695|fgenesh2_kg.4__755__AT2G28140.1
Length=931
Score = 1229 bits (665), Expect = 0.0
Identities = 844/925 (91%), Gaps = 34/925 (4%)
Strand=Plus/Plus
Query 5 TTGTGACCAATCTAAAAGCAAATCAAATTACCC-ATAATTACCCACTAAT--AC--A-C- 57
||||||||||||||||||||||||||| ||||| | |||||||||||||| || | |
Sbjct 1 TTGTGACCAATCTAAAAGCAAATCAAA-TACCCAAAAATTACCCACTAATACACTTATCA 59
Query 58 T-A-TCATAAGTCATATATAACTCACTCTCTCTCTTTCTCACCCTATTTAGAATTGATCC 115
| | |||||||||||||||||||||||||||||| |||| || ||||||||||| |
Sbjct 60 TAATTCATAAGTCATATATAACTCACTCTCTCTCCCTCTC-TCC---TTAGAATTGATTC 115
Query 116 ATTG-AGGAAGATGGAGAGACAGCAGCAAAATTATCTACTTAGTTGGAG-TCACCAAAAC 173
|||| || ||||||||||||||||||||||||||||||||||||||| | ||||||||||
Sbjct 116 ATTGAAGAAAGATGGAGAGACAGCAGCAAAATTATCTACTTAGTTGG-GCTCACCAAAAC 174
Query 174 CAGTGTGGTATAAAGACAATAGAAGAGCTTAGACATTCTCTTCTTCACACAACAATGGAG 233
|| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 175 CATTGTGGTATAAAGACAATAGAAGATCTTAGACATTCTCTTCTTCACACAACAATGGAG 234
Query 234 TTAGAGCAAACAAGAATGGTGGCCAGCGAAGAACTCATTGCCAAAGACGACCAGATAATG 293
|||||||||||||||||||| ||||| |||||||||||||||||||| ||||||||||||
Sbjct 235 TTAGAGCAAACAAGAATGGTAGCCAGTGAAGAACTCATTGCCAAAGATGACCAGATAATG 294
Query 294 CAGCTCAAAGATCTTCTCAACAAAGCTATCAAAGAGAAAGATGAAGCACAAGAGAGATAC 353
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 295 CATCTCAAAGATCTTCTCAACAAAGCTATCAAAGAGAAAGATGAAGCACAAGAGAGATAC 354
Query 354 AAAAGGATTCTTCTTGACCAAAAC-TTCCTCCTTCAACACCAAACGGACGAAGAGCAAGA 412
|| ||| ||||||||||||||||| | || ||||||| |||||||||||||||||||||
Sbjct 355 AAGAGGCTTCTTCTTGACCAAAACAAT-CTTCTTCAACGCCAAACGGACGAAGAGCAAGA 413
Query 413 TCCAAACATCAATGGGTTTCACTCATCGGATGGTGAAGAAAGCATTGTCTCATCTTTTGA 472
|||||||||||||||||||||||||| || ||||||||||||||||| |||||||||||
Sbjct 414 CCCAAACATCAATGGGTTTCACTCATCAGACGGTGAAGAAAGCATTGTTTCATCTTTTGA 473
Query 473 ACCGCCGGTGGAAATTGAGTTAGATTTTCCGGAGATGACTTTACCGGAGAAAGGGAAGCT 532
||||||| |||| || ||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 474 ACCGCCGATGGAGATCGAGTTAGATTTTCCGGAGATGACATTACCGGAGAAAGGGAAGCT 533
Query 533 TTTAAAGGCGGTGGTGAAGGCAGGGCCTTTGCTTCAGACTCTACTTCTAGCTGGACAGCT 592
|||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||
Sbjct 534 TTTAAAGGCGGTGGTGAAGGCAGGGCCTCTGCTTCAGACTCTGCTTCTAGCTGGACAGCT 593
Query 593 TCCACAATGGCGTCACCCGCCACCACAA-CTTGAGTCCTTTGAAATTCCACCGGTGATTA 651
|||||| |||||||| || ||||| || ||||||||||||||||||||||| |||||||
Sbjct 594 TCCACAGTGGCGTCATCCACCACC-GAAGCTTGAGTCCTTTGAAATTCCACCAGTGATTA 652
Query 652 TTGCTGAAGGATCACCATTGTCACAAGATAGTTGTGGGAATAATCTAAACAGGAAGAGGG 711
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 653 TTGCTGAAGCATCACCATTGTCACAAGATAGTTGTGGGAATAATCTAAACAGGAAGAGGG 712
Query 712 TTCACTGTGA----T-T----CCAAAAGAGAGACCAAGTACCAAAGGCTCTTGCCTTGAT 762
|||||||||| | | ||||||||||||||||||||||||||||||| |||||||
Sbjct 713 TTCACTGTGACGAGTCTAATTCCAAAAGAGAGACCAAGTACCAAAGGCTCTTCCCTTGAT 772
Query 763 CGTTTATGGACTTACATTTCACTTAAGCATCAAGTATGTATCGCTTTTCTTTGTATTCTT 822
|||||||| ||| ||||||||||||| |||||||||||||||| ||||||||||||||||
Sbjct 773 CGTTTATGTACTCACATTTCACTTAATCATCAAGTATGTATCGTTTTTCTTTGTATTCTT 832
Query 823 TCCAAGGG-TCATTGTATGTCAAGCCCGTGGGTTAACCCATTTCTTATCTTGGAGTCTAG 881
|||||||| |||||| | ||| ||| |||||||||||||||||||| |||||||||||
Sbjct 833 TCCAAGGGGTCATTGCA-GTCCTGCCTTTGGGTTAACCCATTTCTTATTTTGGAGTCTAG 891
Query 882 GTCCATCATGTT-AAACaaaaaaaG 905
||||| || || ||| ||||||||
Sbjct 892 ATCCATTATATTTAAA-AAAAAAAG 915
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35454312810
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5