BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G28150.1
Length=2074
Score E
Sequences producing significant alignments: (Bits) Value
Ahg933215 jgi|Araly1|933215|scaffold_401203.1 2294 0.0
> Ahg933215 jgi|Araly1|933215|scaffold_401203.1
Length=1676
Score = 2294 bits (1242), Expect = 0.0
Identities = 1539/1673 (92%), Gaps = 57/1673 (3%)
Strand=Plus/Plus
Query 168 CGAGATAAAAACATGGAAGCGAGGATGAAGAAGTATAGCAGAGAAGTGAGTCCAGAGAGA 227
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 9 CGAGATAAAAACATGGAAGCAAGGATGAAGAAGTATAGCAGAGAAGTGAGTCCAGAGAGA 68
Query 228 GCAAAAGTCTGGACTGAGAAATCACCAAAGTATCATCAAAAGATCAAGAAAGTTCAAATT 287
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 69 GCAAAAGTCTGGACTGAGAAATCACCAAAGTATCATCAAAAGATTAAGAAAGTTCAAATT 128
Query 288 GTTTATTACCTCTCCAAGAATCGTCAACTTGAGCATCCTCATTTCATGGAAGTGTTGATT 347
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 129 GTTTATTACCTCTCCAAGAATCGTCAACTCGAGCATCCTCATTTCATGGAAGTGTTGATT 188
Query 348 TCTTCTCCAAATGGTTTATACCTAAGAGATGTTATAGAGAGGCTTAATGTTCTTAGAGGT 407
||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||
Sbjct 189 TCTTCTCCAAATGGTTTATACTTAAGAGATGTTACAGAGAGGCTTAATGTTCTTAGAGGT 248
Query 408 AGAGGAATGGCTTCAATGTATTCTTGGTCTAGTAAGAGAAGCTATAGGAATGGTTTTGTT 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 249 AGAGGAATGGCTTCAATGTATTCTTGGTCTAGTAAGAGAAGCTATAGGAATGGTTTTGTT 308
Query 468 TGGCATGATTTATCAGAAGATGATTTGATTTTACCAGCTAATGGGAATGAGTATGTTCTT 527
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 309 TGGCATGATTTATCAGAAGATGACTTGATTTTACCAGCTAATGGGAATGAGTATGTTCTC 368
Query 528 AAAGGTTCTGAGCTATTTGATGAATCCAATTCAGATCACTTTAGCCCAATTGTGAATTTA 587
|||||||||||||||||||||||||||||||||||||||||||| |||||| |||| |||
Sbjct 369 AAAGGTTCTGAGCTATTTGATGAATCCAATTCAGATCACTTTAGTCCAATTATGAACTTA 428
Query 588 GCTACTCAAAACATGAAGCAGATAGTTGTGGAGCCACCATCATCTAGAAGTATGGATGAT 647
|| | ||||||||||||||| |||||||| ||||||||||||||||||||||||||||||
Sbjct 429 GCGAGTCAAAACATGAAGCAAATAGTTGTCGAGCCACCATCATCTAGAAGTATGGATGAT 488
Query 648 TCGTCTTCATCTTCGAGTATGAATAATGGTAAAGGAACTAATAAGCATTCTCATGAAGAT 707
|||||||| |||||||||||||||||||| || |||||||||||||||||||| ||||||
Sbjct 489 TCGTCTTCGTCTTCGAGTATGAATAATGGGAAGGGAACTAATAAGCATTCTCAAGAAGAT 548
Query 708 GATGAGCTTTCTCCTCCAGCTCTTCGCTCTGTTTCATCTTCCGGTGTATCTCCTGATTCT 767
|||||||||||||| |||||| ||||||||||||| || || |||||||| |||||||||
Sbjct 549 GATGAGCTTTCTCCACCAGCTGTTCGCTCTGTTTCCTCGTCTGGTGTATCGCCTGATTCT 608
Query 768 CGAGACGCTAAGAACTCATCTTCCTGGTGTTTGGCTGAGTACAAAGTGTATAAGAGCGAG 827
||||||| |||||||| ||||| ||||||||||||||||||||||| ||||||||||||
Sbjct 609 AGAGACGCGAAGAACTCGTCTTCTTGGTGTTTGGCTGAGTACAAAGTTTATAAGAGCGAG 668
Query 828 GGACTCGCAGATGCTTCTACTCAAACCGATGAAACTGTGAGTGGTCGTTCTAAAACACCT 887
|| ||||||||||| |||||||||||||||||||||||||||||| ||||||||| ||||
Sbjct 669 GGGCTCGCAGATGCGTCTACTCAAACCGATGAAACTGTGAGTGGTTGTTCTAAAAAACCT 728
Query 888 ATAGAGACTTTTAGTAGAGGTGTATCAACTGATGAAGATGTGTCATCAGAGCCTGAAACC 947
|||||||| || ||||||||||| |||||||||||||||| ||||||||| |||||||||
Sbjct 729 ATAGAGACCTTCAGTAGAGGTGTTTCAACTGATGAAGATGGGTCATCAGAACCTGAAACC 788
Query 948 AGCGAGAATAACCTCGTGAGTGAGGCTTCGTGTGCGGGGAAGGAGAGGGAGAGTGCGGAA 1007
||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 789 AGCGAAAATAATATCGTGAGTGAGGCTTCGTGTGCGGGGAAGGAGAGGGAGAGTGCGGAA 848
Query 1008 ATATCAAGAAACTCTGTCTCGCCGCCTTTTTCCAATAGTGCTTCTTCGCTAGGAGGAAAG 1067
|||||||||||||||||||| |||||||||||||||||||||||||||||||| | ||||
Sbjct 849 ATATCAAGAAACTCTGTCTCACCGCCTTTTTCCAATAGTGCTTCTTCGCTAGGTGCAAAG 908
Query 1068 ACTGATACTTTGGAGTCTCTAATAAGAGCTGATGTTAGTAAGATGAATAGTTTTAGGATT 1127
|||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 909 ACTGATACATTGGAGTCTCTAATAAGAGCTGATGTTAGTAAAATGAATAGTTTTAGGATT 968
Query 1128 CTTGAACAAGAAGATGTTCGAATGCCCGCTATTCCGAGGCTTAGGGCCTCGAATATGCTG 1187
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 969 CTTGAACAAGAAGATGTTCGAATGCCCGCTAATCCGAGGCTTAGGGCCTCGAATATGCTG 1028
Query 1188 ATGCAGTTGATATCTTGTGGTTCAATATCAGTCAAGGATAACAATTTCGGCCTTGTACCT 1247
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1029 ATGCAGTTGATATCTTGTGGTTCAATATCAGTCAAGGATAACAATTTCGGCCTTGTCCCA 1088
Query 1248 ACTTACAAACCGAAATTTGGACACTCGAAGTTTCCGTCTCCTTTTTTCTCCTCGTCGTTT 1307
|||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||
Sbjct 1089 ACTTACAAACCGAAATTTGGCCACTCGAAGTTTCCGTCTCCGTTTTTCTCCTCGTCGTTT 1148
Query 1308 ATGATGGGAGATCTTGACCGTTTGTCGGAAACTCCGAGTCTAATGGGCCTGAGGAT-GGA 1366
||||||||||||||||||||||| ||||||||||||||||||||||| |||| || |||
Sbjct 1149 ATGATGGGAGATCTTGACCGTTTATCGGAAACTCCGAGTCTAATGGGTATGAG-ATTGGA 1207
Query 1367 GGAGAAAGAGTATTTTAGTGGGAGCTTAGTGGAGACTAAGCTACAGAAGAAGGATGCAGC 1426
|||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||
Sbjct 1208 GGAGAAAGAGTATTTTAGTGGGAGCTTAGTCGAGACGAAGCTACAGAAGAAGGATGCAGC 1267
Query 1427 GGATAG-TAACG---CTTCTCTTAAGCGTTCTTCATCCTACAATGGTGACAGGGCATCCA 1482
|| || ||| | |||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1268 AGA-AGCTAATGATGCTTCACTTAAGCGTTCTTCATCCTACAATGGTGACAGGGCATCCA 1326
Query 1483 ACCAAATGGGTGTAGCAGAGAATGGAGACTCAAAACCGGATAGTTCTAAAAATAATCCAA 1542
||||||||||||||||||| ||||||||||||||||||| |||||| ||| | |||||||
Sbjct 1327 ACCAAATGGGTGTAGCAGAAAATGGAGACTCAAAACCGGGTAGTTCGAAATACAATCCAA 1386
Query 1543 GCTCAAGAAAGGCGTCTTCTAT-TCTAGGGAAGCAACAACCAC-T------T----G--- 1587
|||| ||||||| || ||||| | |||| |||||||| |||| | | |
Sbjct 1387 GCTCGGGAAAGGCATCGTCTATAT-TAGGCAAGCAACAGCCACGTAGCGAGTCCATGAGA 1445
Query 1588 TCTCC-G----A-AAA-GAGAAGAGACTCATCAGAAGATACTACCAAGAACATTCCATGT 1640
||||| | | ||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct 1446 TCTCCTGTCTCAGAAAAGAAAAGAGACTCATCAGAAGATACTACCAAGAACATTCCATGT 1505
Query 1641 ACCACTAAAACACATGATGCTTGCAGTAAAAGAATAACCGAGTCTTTAAGGAAGCCCGAT 1700
|| | | | | | | || |||||||||| |||| ||||||||||||
Sbjct 1506 -CC-C-A---C---T-A-------A--AA--GAATAACCGAATCTTCGAGGAAGCCCGAT 1544
Query 1701 TCATTCAGAGAAGACGAGGAGAGAGTTATCAAGATCGACGAAAGGCTTGCTTCAGGAGCA 1760
|||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||
Sbjct 1545 TCATTCAGAGAAGACGAGGAGAAAGTTATTAAGATCGACGAAAGGCTTGCTTCAGGAGCA 1604
Query 1761 CGAGTTAGAATCGAATCGAAAG---T-G--CCTTCAGAAGAGCCTTAACCAAG 1807
|||||||||||||||||||||| | | |||||||| ||||||||||||||
Sbjct 1605 CGAGTTAGAATCGAATCGAAAGCACTAGTGCCTTCAGAGGAGCCTTAACCAAG 1657
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 78008821760
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5