BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G28150.1 Length=2074 Score E Sequences producing significant alignments: (Bits) Value Ahg933215 jgi|Araly1|933215|scaffold_401203.1 2294 0.0 > Ahg933215 jgi|Araly1|933215|scaffold_401203.1 Length=1676 Score = 2294 bits (1242), Expect = 0.0 Identities = 1539/1673 (92%), Gaps = 57/1673 (3%) Strand=Plus/Plus Query 168 CGAGATAAAAACATGGAAGCGAGGATGAAGAAGTATAGCAGAGAAGTGAGTCCAGAGAGA 227 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 9 CGAGATAAAAACATGGAAGCAAGGATGAAGAAGTATAGCAGAGAAGTGAGTCCAGAGAGA 68 Query 228 GCAAAAGTCTGGACTGAGAAATCACCAAAGTATCATCAAAAGATCAAGAAAGTTCAAATT 287 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 69 GCAAAAGTCTGGACTGAGAAATCACCAAAGTATCATCAAAAGATTAAGAAAGTTCAAATT 128 Query 288 GTTTATTACCTCTCCAAGAATCGTCAACTTGAGCATCCTCATTTCATGGAAGTGTTGATT 347 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 129 GTTTATTACCTCTCCAAGAATCGTCAACTCGAGCATCCTCATTTCATGGAAGTGTTGATT 188 Query 348 TCTTCTCCAAATGGTTTATACCTAAGAGATGTTATAGAGAGGCTTAATGTTCTTAGAGGT 407 ||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||| Sbjct 189 TCTTCTCCAAATGGTTTATACTTAAGAGATGTTACAGAGAGGCTTAATGTTCTTAGAGGT 248 Query 408 AGAGGAATGGCTTCAATGTATTCTTGGTCTAGTAAGAGAAGCTATAGGAATGGTTTTGTT 467 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 249 AGAGGAATGGCTTCAATGTATTCTTGGTCTAGTAAGAGAAGCTATAGGAATGGTTTTGTT 308 Query 468 TGGCATGATTTATCAGAAGATGATTTGATTTTACCAGCTAATGGGAATGAGTATGTTCTT 527 ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 309 TGGCATGATTTATCAGAAGATGACTTGATTTTACCAGCTAATGGGAATGAGTATGTTCTC 368 Query 528 AAAGGTTCTGAGCTATTTGATGAATCCAATTCAGATCACTTTAGCCCAATTGTGAATTTA 587 |||||||||||||||||||||||||||||||||||||||||||| |||||| |||| ||| Sbjct 369 AAAGGTTCTGAGCTATTTGATGAATCCAATTCAGATCACTTTAGTCCAATTATGAACTTA 428 Query 588 GCTACTCAAAACATGAAGCAGATAGTTGTGGAGCCACCATCATCTAGAAGTATGGATGAT 647 || | ||||||||||||||| |||||||| |||||||||||||||||||||||||||||| Sbjct 429 GCGAGTCAAAACATGAAGCAAATAGTTGTCGAGCCACCATCATCTAGAAGTATGGATGAT 488 Query 648 TCGTCTTCATCTTCGAGTATGAATAATGGTAAAGGAACTAATAAGCATTCTCATGAAGAT 707 |||||||| |||||||||||||||||||| || |||||||||||||||||||| |||||| Sbjct 489 TCGTCTTCGTCTTCGAGTATGAATAATGGGAAGGGAACTAATAAGCATTCTCAAGAAGAT 548 Query 708 GATGAGCTTTCTCCTCCAGCTCTTCGCTCTGTTTCATCTTCCGGTGTATCTCCTGATTCT 767 |||||||||||||| |||||| ||||||||||||| || || |||||||| ||||||||| Sbjct 549 GATGAGCTTTCTCCACCAGCTGTTCGCTCTGTTTCCTCGTCTGGTGTATCGCCTGATTCT 608 Query 768 CGAGACGCTAAGAACTCATCTTCCTGGTGTTTGGCTGAGTACAAAGTGTATAAGAGCGAG 827 ||||||| |||||||| ||||| ||||||||||||||||||||||| |||||||||||| Sbjct 609 AGAGACGCGAAGAACTCGTCTTCTTGGTGTTTGGCTGAGTACAAAGTTTATAAGAGCGAG 668 Query 828 GGACTCGCAGATGCTTCTACTCAAACCGATGAAACTGTGAGTGGTCGTTCTAAAACACCT 887 || ||||||||||| |||||||||||||||||||||||||||||| ||||||||| |||| Sbjct 669 GGGCTCGCAGATGCGTCTACTCAAACCGATGAAACTGTGAGTGGTTGTTCTAAAAAACCT 728 Query 888 ATAGAGACTTTTAGTAGAGGTGTATCAACTGATGAAGATGTGTCATCAGAGCCTGAAACC 947 |||||||| || ||||||||||| |||||||||||||||| ||||||||| ||||||||| Sbjct 729 ATAGAGACCTTCAGTAGAGGTGTTTCAACTGATGAAGATGGGTCATCAGAACCTGAAACC 788 Query 948 AGCGAGAATAACCTCGTGAGTGAGGCTTCGTGTGCGGGGAAGGAGAGGGAGAGTGCGGAA 1007 ||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 789 AGCGAAAATAATATCGTGAGTGAGGCTTCGTGTGCGGGGAAGGAGAGGGAGAGTGCGGAA 848 Query 1008 ATATCAAGAAACTCTGTCTCGCCGCCTTTTTCCAATAGTGCTTCTTCGCTAGGAGGAAAG 1067 |||||||||||||||||||| |||||||||||||||||||||||||||||||| | |||| Sbjct 849 ATATCAAGAAACTCTGTCTCACCGCCTTTTTCCAATAGTGCTTCTTCGCTAGGTGCAAAG 908 Query 1068 ACTGATACTTTGGAGTCTCTAATAAGAGCTGATGTTAGTAAGATGAATAGTTTTAGGATT 1127 |||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 909 ACTGATACATTGGAGTCTCTAATAAGAGCTGATGTTAGTAAAATGAATAGTTTTAGGATT 968 Query 1128 CTTGAACAAGAAGATGTTCGAATGCCCGCTATTCCGAGGCTTAGGGCCTCGAATATGCTG 1187 ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 969 CTTGAACAAGAAGATGTTCGAATGCCCGCTAATCCGAGGCTTAGGGCCTCGAATATGCTG 1028 Query 1188 ATGCAGTTGATATCTTGTGGTTCAATATCAGTCAAGGATAACAATTTCGGCCTTGTACCT 1247 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 1029 ATGCAGTTGATATCTTGTGGTTCAATATCAGTCAAGGATAACAATTTCGGCCTTGTCCCA 1088 Query 1248 ACTTACAAACCGAAATTTGGACACTCGAAGTTTCCGTCTCCTTTTTTCTCCTCGTCGTTT 1307 |||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||| Sbjct 1089 ACTTACAAACCGAAATTTGGCCACTCGAAGTTTCCGTCTCCGTTTTTCTCCTCGTCGTTT 1148 Query 1308 ATGATGGGAGATCTTGACCGTTTGTCGGAAACTCCGAGTCTAATGGGCCTGAGGAT-GGA 1366 ||||||||||||||||||||||| ||||||||||||||||||||||| |||| || ||| Sbjct 1149 ATGATGGGAGATCTTGACCGTTTATCGGAAACTCCGAGTCTAATGGGTATGAG-ATTGGA 1207 Query 1367 GGAGAAAGAGTATTTTAGTGGGAGCTTAGTGGAGACTAAGCTACAGAAGAAGGATGCAGC 1426 |||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||| Sbjct 1208 GGAGAAAGAGTATTTTAGTGGGAGCTTAGTCGAGACGAAGCTACAGAAGAAGGATGCAGC 1267 Query 1427 GGATAG-TAACG---CTTCTCTTAAGCGTTCTTCATCCTACAATGGTGACAGGGCATCCA 1482 || || ||| | |||| |||||||||||||||||||||||||||||||||||||||| Sbjct 1268 AGA-AGCTAATGATGCTTCACTTAAGCGTTCTTCATCCTACAATGGTGACAGGGCATCCA 1326 Query 1483 ACCAAATGGGTGTAGCAGAGAATGGAGACTCAAAACCGGATAGTTCTAAAAATAATCCAA 1542 ||||||||||||||||||| ||||||||||||||||||| |||||| ||| | ||||||| Sbjct 1327 ACCAAATGGGTGTAGCAGAAAATGGAGACTCAAAACCGGGTAGTTCGAAATACAATCCAA 1386 Query 1543 GCTCAAGAAAGGCGTCTTCTAT-TCTAGGGAAGCAACAACCAC-T------T----G--- 1587 |||| ||||||| || ||||| | |||| |||||||| |||| | | | Sbjct 1387 GCTCGGGAAAGGCATCGTCTATAT-TAGGCAAGCAACAGCCACGTAGCGAGTCCATGAGA 1445 Query 1588 TCTCC-G----A-AAA-GAGAAGAGACTCATCAGAAGATACTACCAAGAACATTCCATGT 1640 ||||| | | ||| || |||||||||||||||||||||||||||||||||||||||| Sbjct 1446 TCTCCTGTCTCAGAAAAGAAAAGAGACTCATCAGAAGATACTACCAAGAACATTCCATGT 1505 Query 1641 ACCACTAAAACACATGATGCTTGCAGTAAAAGAATAACCGAGTCTTTAAGGAAGCCCGAT 1700 || | | | | | | || |||||||||| |||| |||||||||||| Sbjct 1506 -CC-C-A---C---T-A-------A--AA--GAATAACCGAATCTTCGAGGAAGCCCGAT 1544 Query 1701 TCATTCAGAGAAGACGAGGAGAGAGTTATCAAGATCGACGAAAGGCTTGCTTCAGGAGCA 1760 |||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||| Sbjct 1545 TCATTCAGAGAAGACGAGGAGAAAGTTATTAAGATCGACGAAAGGCTTGCTTCAGGAGCA 1604 Query 1761 CGAGTTAGAATCGAATCGAAAG---T-G--CCTTCAGAAGAGCCTTAACCAAG 1807 |||||||||||||||||||||| | | |||||||| |||||||||||||| Sbjct 1605 CGAGTTAGAATCGAATCGAAAGCACTAGTGCCTTCAGAGGAGCCTTAACCAAG 1657 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 78008821760 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5