BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G28160.1
Length=1176
Score E
Sequences producing significant alignments: (Bits) Value
Ahg481693 jgi|Araly1|481693|fgenesh2_kg.4__753__AT2G28160.1 1729 0.0
> Ahg481693 jgi|Araly1|481693|fgenesh2_kg.4__753__AT2G28160.1
Length=1161
Score = 1729 bits (936), Expect = 0.0
Identities = 1088/1163 (94%), Gaps = 4/1163 (0%)
Strand=Plus/Plus
Query 1 CACAAATGGAAGGAAGAGTCAACGCTCTGTCAAACATAAACGATCTCGAACTTCACAATT 60
|||||||||||||||||||||||||| |||||| |||||||||||| ||||||||| |||
Sbjct 1 CACAAATGGAAGGAAGAGTCAACGCTTTGTCAACCATAAACGATCTAGAACTTCACGATT 60
Query 61 TCTTGGTCGATCCAAACTTCGATCAGTTCATAAACCTCATAAGAGGAGATCATCAAACCA 120
|||||||||||||||||||||||||||||||||| |||||| |||| ||||||||| |||
Sbjct 61 TCTTGGTCGATCCAAACTTCGATCAGTTCATAAATCTCATACGAGGTGATCATCAAGCCA 120
Query 121 TTGACGAAAACCCAGTTCTTGATTTCGATCTTGGTCCATTACAAAACAGCCCCTGTTTCA 180
| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 121 TCGACGAAAACCCAGTTCTTGATTTCGATCTTGGTCCATTACAAAACAGCCCATGTTTCA 180
Query 181 TAGACGAGAACCAGTTCATCCCAACACCTGTCGATGACCTCTTCGACGAATTGCCTGACT 240
|||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||
Sbjct 181 TAGACGAGAACCAGTTCATCCCAACACCTGTCGATGACCTGTTCGACGAACTGCCTGACT 240
Query 241 TAGACTCCAACGTTGCTGAATCATTCCGTAGCTTCGACGGTGATAGTGTTAGAGCCGGTG 300
|||||||||| || |||||||| ||||||||||| || ||||| |||||||||||| |
Sbjct 241 TAGACTCCAATGTCGCTGAATCTTTCCGTAGCTTTGATGGTGAGAGTGTTAGAGCCAACG 300
Query 301 GTGAAGAAGATGAAGAAGATTACAACGACGGTGATGATTCTTCAGCCACTACTACGAATA 360
| |||||||| ||||||||||||||||||||||||||||| || |||||||| |||||||
Sbjct 301 GCGAAGAAGAAGAAGAAGATTACAACGACGGTGATGATTCCTCTGCCACTACGACGAATA 360
Query 361 ATGATGGGACCCGTAAGACGAAGACTGATCGGTCTAGGACTTTGATCTCTGAGAGAAGAA 420
||||||| | ||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 361 ATGATGGAAGCCGTAAGACTAAGACTGATCGGTCTAGGACTTTGATCTCTGAGAGAAGAA 420
Query 421 GGAGAGGGCGTATGAAGGATAAGCTTTATGCATTGAGATCTCTTGTTCCCAATATTACTA 480
||||||| ||||||||||||||||||||||||||||||||||||||||| || |||||||
Sbjct 421 GGAGAGGTCGTATGAAGGATAAGCTTTATGCATTGAGATCTCTTGTTCCTAACATTACTA 480
Query 481 AGATGGATAAAGCATCCATTGTTGGAGATGCAGTGTTGTATGTTCAAGAACTTCAGTCAC 540
|||||||||||||||| || ||||||||||| |||| |||||||||||||||||||||||
Sbjct 481 AGATGGATAAAGCATCTATCGTTGGAGATGCGGTGTCGTATGTTCAAGAACTTCAGTCAC 540
Query 541 AAGCGAAGAAACTCAAATCCGATATCGCGGGTCTTGAAGCTTCTTTAAACTCTACTGGAG 600
|||| |||||||||||||||||||||||||| ||||||||||||||||||| |||||| |
Sbjct 541 AAGCCAAGAAACTCAAATCCGATATCGCGGGACTTGAAGCTTCTTTAAACTTTACTGGTG 600
Query 601 GGTACCAAGAACATGCTCCTGATGCTCAAAAGACTCAACCTTTTCGCGGTATCAATCCTC 660
|||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 601 GGTACCAAGAACCTGCTCCGGATGCTCAAAAGACTCAACCTTTTCGCGGTATCAATCCTC 660
Query 661 CTGCTTCCaaaaaaaTCATTCAGATGGATGTTATACAAGTGGAGGAGAAAGGGTTTTATG 720
| | |||||| |||||| |||||||||||||||| |||||||||||||||||||||||||
Sbjct 661 CGGTTTCCAAGAAAATCGTTCAGATGGATGTTATTCAAGTGGAGGAGAAAGGGTTTTATG 720
Query 721 TGAGATTGGTGTGTAACAAAGGAGAAGGTGTTGCTCCATCTCTTTACAAGTCTTTGGAGT 780
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 721 TGAGATTGGTGTGTAATAAAGGAGAAGGTGTTGCTCCATCTCTTTACAAGTCTTTGGAGT 780
Query 781 CTCTTACAAGTTTCCAAGTGCAGAACTCTAACCTAAGCTCTCCTTCTCCGGACACATACC 840
|||||||||||||||||||||| ||||| |||||||||||||||||||| |||| |||||
Sbjct 781 CTCTTACAAGTTTCCAAGTGCAAAACTCAAACCTAAGCTCTCCTTCTCCTGACAGATACC 840
Query 841 TCTTAACATATACCTTAGATGGGACATGCTTCGAACAGAGCTTAAACTTGCCTAACCTGA 900
||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 841 TCTTAACATATACGTTAGATGGGACATGCTTTGAACAGAGCTTAAACTTGCCTAACCTGA 900
Query 901 AGCTGTGGATCACTGGATCACTTTTAAATCAAGGTTTTGAATTCATCAAGTCATTTACTT 960
||||||||||||||||||||||| |||| ||||||||||||||||||||| |||| ||||
Sbjct 901 AGCTGTGGATCACTGGATCACTTCTAAACCAAGGTTTTGAATTCATCAAGCCATTCACTT 960
Query 961 GATTCTATAACGCTTGCTCTAACGTGAGTCAAATCCGGTTCTGCA-CTATATTGATTGTG 1019
||||| |||||||||||||||||||||| ||||||||||||||| || ||||||||||
Sbjct 961 GATTCCGTAACGCTTGCTCTAACGTGAGTAAAATCCGGTTCTGCATCTC-ATTGATTGTG 1019
Query 1020 TACCTTTCTTACATGTTTCATAACTTCCAGGGCTCTAATTTCTA-TTCTAGTGATGATGT 1078
|||||||||| ||||||||||||||| ||||| |||||||| || |||||||||||||||
Sbjct 1020 TACCTTTCTTGCATGTTTCATAACTTTCAGGGATCTAATTT-TAATTCTAGTGATGATGT 1078
Query 1079 AACCGAGATTGTTGATTCTCTATTGAATAAACACCATGTTATATAGTAATTTAGCGACAA 1138
|| |||||||||||||||||| ||||||||||||| | ||||| ||||||||||||||||
Sbjct 1079 AATCGAGATTGTTGATTCTCTCTTGAATAAACACCGTCTTATAGAGTAATTTAGCGACAA 1138
Query 1139 ATTGTATGGTTAAATGAAGTAAT 1161
|||||||| ||||||||||||||
Sbjct 1139 ATTGTATGATTAAATGAAGTAAT 1161
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43879477467
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5