BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G28160.1 Length=1176 Score E Sequences producing significant alignments: (Bits) Value Ahg481693 jgi|Araly1|481693|fgenesh2_kg.4__753__AT2G28160.1 1729 0.0 > Ahg481693 jgi|Araly1|481693|fgenesh2_kg.4__753__AT2G28160.1 Length=1161 Score = 1729 bits (936), Expect = 0.0 Identities = 1088/1163 (94%), Gaps = 4/1163 (0%) Strand=Plus/Plus Query 1 CACAAATGGAAGGAAGAGTCAACGCTCTGTCAAACATAAACGATCTCGAACTTCACAATT 60 |||||||||||||||||||||||||| |||||| |||||||||||| ||||||||| ||| Sbjct 1 CACAAATGGAAGGAAGAGTCAACGCTTTGTCAACCATAAACGATCTAGAACTTCACGATT 60 Query 61 TCTTGGTCGATCCAAACTTCGATCAGTTCATAAACCTCATAAGAGGAGATCATCAAACCA 120 |||||||||||||||||||||||||||||||||| |||||| |||| ||||||||| ||| Sbjct 61 TCTTGGTCGATCCAAACTTCGATCAGTTCATAAATCTCATACGAGGTGATCATCAAGCCA 120 Query 121 TTGACGAAAACCCAGTTCTTGATTTCGATCTTGGTCCATTACAAAACAGCCCCTGTTTCA 180 | |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 121 TCGACGAAAACCCAGTTCTTGATTTCGATCTTGGTCCATTACAAAACAGCCCATGTTTCA 180 Query 181 TAGACGAGAACCAGTTCATCCCAACACCTGTCGATGACCTCTTCGACGAATTGCCTGACT 240 |||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||| Sbjct 181 TAGACGAGAACCAGTTCATCCCAACACCTGTCGATGACCTGTTCGACGAACTGCCTGACT 240 Query 241 TAGACTCCAACGTTGCTGAATCATTCCGTAGCTTCGACGGTGATAGTGTTAGAGCCGGTG 300 |||||||||| || |||||||| ||||||||||| || ||||| |||||||||||| | Sbjct 241 TAGACTCCAATGTCGCTGAATCTTTCCGTAGCTTTGATGGTGAGAGTGTTAGAGCCAACG 300 Query 301 GTGAAGAAGATGAAGAAGATTACAACGACGGTGATGATTCTTCAGCCACTACTACGAATA 360 | |||||||| ||||||||||||||||||||||||||||| || |||||||| ||||||| Sbjct 301 GCGAAGAAGAAGAAGAAGATTACAACGACGGTGATGATTCCTCTGCCACTACGACGAATA 360 Query 361 ATGATGGGACCCGTAAGACGAAGACTGATCGGTCTAGGACTTTGATCTCTGAGAGAAGAA 420 ||||||| | ||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 361 ATGATGGAAGCCGTAAGACTAAGACTGATCGGTCTAGGACTTTGATCTCTGAGAGAAGAA 420 Query 421 GGAGAGGGCGTATGAAGGATAAGCTTTATGCATTGAGATCTCTTGTTCCCAATATTACTA 480 ||||||| ||||||||||||||||||||||||||||||||||||||||| || ||||||| Sbjct 421 GGAGAGGTCGTATGAAGGATAAGCTTTATGCATTGAGATCTCTTGTTCCTAACATTACTA 480 Query 481 AGATGGATAAAGCATCCATTGTTGGAGATGCAGTGTTGTATGTTCAAGAACTTCAGTCAC 540 |||||||||||||||| || ||||||||||| |||| ||||||||||||||||||||||| Sbjct 481 AGATGGATAAAGCATCTATCGTTGGAGATGCGGTGTCGTATGTTCAAGAACTTCAGTCAC 540 Query 541 AAGCGAAGAAACTCAAATCCGATATCGCGGGTCTTGAAGCTTCTTTAAACTCTACTGGAG 600 |||| |||||||||||||||||||||||||| ||||||||||||||||||| |||||| | Sbjct 541 AAGCCAAGAAACTCAAATCCGATATCGCGGGACTTGAAGCTTCTTTAAACTTTACTGGTG 600 Query 601 GGTACCAAGAACATGCTCCTGATGCTCAAAAGACTCAACCTTTTCGCGGTATCAATCCTC 660 |||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 601 GGTACCAAGAACCTGCTCCGGATGCTCAAAAGACTCAACCTTTTCGCGGTATCAATCCTC 660 Query 661 CTGCTTCCaaaaaaaTCATTCAGATGGATGTTATACAAGTGGAGGAGAAAGGGTTTTATG 720 | | |||||| |||||| |||||||||||||||| ||||||||||||||||||||||||| Sbjct 661 CGGTTTCCAAGAAAATCGTTCAGATGGATGTTATTCAAGTGGAGGAGAAAGGGTTTTATG 720 Query 721 TGAGATTGGTGTGTAACAAAGGAGAAGGTGTTGCTCCATCTCTTTACAAGTCTTTGGAGT 780 |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 721 TGAGATTGGTGTGTAATAAAGGAGAAGGTGTTGCTCCATCTCTTTACAAGTCTTTGGAGT 780 Query 781 CTCTTACAAGTTTCCAAGTGCAGAACTCTAACCTAAGCTCTCCTTCTCCGGACACATACC 840 |||||||||||||||||||||| ||||| |||||||||||||||||||| |||| ||||| Sbjct 781 CTCTTACAAGTTTCCAAGTGCAAAACTCAAACCTAAGCTCTCCTTCTCCTGACAGATACC 840 Query 841 TCTTAACATATACCTTAGATGGGACATGCTTCGAACAGAGCTTAAACTTGCCTAACCTGA 900 ||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 841 TCTTAACATATACGTTAGATGGGACATGCTTTGAACAGAGCTTAAACTTGCCTAACCTGA 900 Query 901 AGCTGTGGATCACTGGATCACTTTTAAATCAAGGTTTTGAATTCATCAAGTCATTTACTT 960 ||||||||||||||||||||||| |||| ||||||||||||||||||||| |||| |||| Sbjct 901 AGCTGTGGATCACTGGATCACTTCTAAACCAAGGTTTTGAATTCATCAAGCCATTCACTT 960 Query 961 GATTCTATAACGCTTGCTCTAACGTGAGTCAAATCCGGTTCTGCA-CTATATTGATTGTG 1019 ||||| |||||||||||||||||||||| ||||||||||||||| || |||||||||| Sbjct 961 GATTCCGTAACGCTTGCTCTAACGTGAGTAAAATCCGGTTCTGCATCTC-ATTGATTGTG 1019 Query 1020 TACCTTTCTTACATGTTTCATAACTTCCAGGGCTCTAATTTCTA-TTCTAGTGATGATGT 1078 |||||||||| ||||||||||||||| ||||| |||||||| || ||||||||||||||| Sbjct 1020 TACCTTTCTTGCATGTTTCATAACTTTCAGGGATCTAATTT-TAATTCTAGTGATGATGT 1078 Query 1079 AACCGAGATTGTTGATTCTCTATTGAATAAACACCATGTTATATAGTAATTTAGCGACAA 1138 || |||||||||||||||||| ||||||||||||| | ||||| |||||||||||||||| Sbjct 1079 AATCGAGATTGTTGATTCTCTCTTGAATAAACACCGTCTTATAGAGTAATTTAGCGACAA 1138 Query 1139 ATTGTATGGTTAAATGAAGTAAT 1161 |||||||| |||||||||||||| Sbjct 1139 ATTGTATGATTAAATGAAGTAAT 1161 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 43879477467 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5