BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G28170.1
Length=2406
Score E
Sequences producing significant alignments: (Bits) Value
Ahg481692 jgi|Araly1|481692|fgenesh2_kg.4__752__AT2G28170.1 1277 0.0
> Ahg481692 jgi|Araly1|481692|fgenesh2_kg.4__752__AT2G28170.1
Length=1296
Score = 1277 bits (691), Expect = 0.0
Identities = 852/930 (92%), Gaps = 9/930 (1%)
Strand=Plus/Plus
Query 1474 CCTGACCACATAACATCCATGGTCAACTTTGTGGAACTTTTTAACCCAACACAAGAATCA 1533
|||||||||||||| ||||||||||||||| | || ||||||||||||||||||| |||
Sbjct 352 CCTGACCACATAACCTCCATGGTCAACTTTCTAGATGTTTTTAACCCAACACAAGATTCA 411
Query 1534 AAATTAGAATGCAATGTTCTTCACCTTGTGGAGCTCATAGGTCAGGCCATTCCTACCTTC 1593
|||| |||||||| ||| |||| || | ||||||||||||||| |||| ||||||||||
Sbjct 412 CAATTGGAATGCAACGTTGTTCAACTAGGGGAGCTCATAGGTCAAGCCAGTCCTACCTTC 471
Query 1594 ATTTCCCACAAGATGCAAAAGCCGAAGGTTGGAACACGCTCTTGCTCCCGCAATGTCATA 1653
||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||
Sbjct 472 ATTTCCCACAAGATGCAAAAGCCGAGGGTTGGAACACGCTCTTACTCCCGCAATGTCATA 531
Query 1654 ACTGCATTCTTAAGCCTTCGTAGACATTTAACCAAAGAGGCAATTTCCATTGACATCTTT 1713
||||||||||||| |||||||||||||| ||| |||||||||| |||||||||||||||
Sbjct 532 ACTGCATTCTTAAATCTTCGTAGACATTTCACCGAAGAGGCAATGTCCATTGACATCTTT 591
Query 1714 ACATCTGCTAGCTTGGTAGAGCACATGCACGAGGACCTCTGTTGGCTTGCCCTTGACAAG 1773
|||| ||| ||||||||||| |||||||||||||||| || ||||||||||||||||||
Sbjct 592 ACATATGCAAGCTTGGTAGATCACATGCACGAGGACCCCTTTTGGCTTGCCCTTGACAA- 650
Query 1774 AA-TGTAGCTCTCGTTGTACTTCCTTTTCACCGTTCTTGGTCTGTTGACCGCTCAACCAT 1832
|| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
Sbjct 651 AATTGTAGCTCTCGTTGTGCTTCCTTTTCACCGTTCTTGGTCTGTTGACCGCTCAACCGT 710
Query 1833 TGTCTCTGACGACAAGGCCATGCAGAATCTCAACCACAAAGTCTTGAAAAGAGCGTCTTG 1892
||| |||||||||||||||||||||||||||||| || | ||||||||||||||||||
Sbjct 711 GGTCACTGACGACAAGGCCATGCAGAATCTCAACCGTAATGCCTTGAAAAGAGCGTCTTG 770
Query 1893 CTCTGTTGGAATCTTCGTCTACCGGAAACCTTTATGGGAATCTCAAATGCACGGCTCATG 1952
|||||||||| |||||| ||||||||||||| ||||||||||||||||| |||| |||||
Sbjct 771 CTCTGTTGGAGTCTTCGGCTACCGGAAACCTCTATGGGAATCTCAAATGGACGGATCATG 830
Query 1953 TTACAAGGTGTGTGCAATAGTTGTGGGAGGGAAAGACGATAAAGAAGCCTTAGCATTCAC 2012
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||
Sbjct 831 TTACAAGGTGTGTGCAATAGTTGTGGGAGGGAAAGACGATAGAGAAGCCTTAGCATTTAC 890
Query 2013 CAACCGTATGAGGAGAAACAAGCAGACAAGCGTAACCATCTTACACCTCATACCTCAACT 2072
|||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||
Sbjct 891 CAACCGTATGAGGAGAAACAAGCAGACAAGCGTAACCATCTTACGCCTCATCCCTCAACT 950
Query 2073 TACTACCGAGGAAAGCGAAGACTCGGTGCAGAAGTTGGATTACGATGACATAAAAGAG-A 2131
|||||| | ||||||||| |||||||||||||||||||||| ||| |||| ||||| | |
Sbjct 951 TACTACGGGGGAAAGCGATGACTCGGTGCAGAAGTTGGATTTCGAGGACA-AAAAGGGGA 1009
Query 2132 TAATGAAGACTGAGGA---TTCAAATGAAAATGATTC-ATGGATATGTATAGAAAAAAGC 2187
||||||| | |||||| |||||||||||||||||| ||| |||||||| ||||||||
Sbjct 1010 TAATGAACAATGAGGAGGATTCAAATGAAAATGATTCCATG-ATATGTATCGAAAAAAGG 1068
Query 2188 GTCAAAGAAGGGGCTGAGACTTCAGTGATACTTAGATCAATAGCGTATGATTATGATTTG 2247
|||||||||||||||||||||||| ||||||| |||||||||||||||||||||| ||||
Sbjct 1069 GTCAAAGAAGGGGCTGAGACTTCAATGATACTAAGATCAATAGCGTATGATTATGCTTTG 1128
Query 2248 TTTATAGTTGGAAGAAGTAGCGGAATGAATAGCGCAGTTACAAAAGGATTAAATGAATGG 2307
|||||||||| ||| || ||||||||||||||||| ||||| ||||||| |||||| ||
Sbjct 1129 TTTATAGTTGAAAGTAGCAGCGGAATGAATAGCGCGGTTACGCAAGGATTGAATGAACGG 1188
Query 2308 ACAGAGTTCGAGGAACTTGGAGCCCTCGGAGATGTTATAGCGTCAAAGGAGTTTCCTTCA 2367
|||||||| ||||||||||||||| ||||||||||||||||||||||||| |||||||||
Sbjct 1189 ACAGAGTTTGAGGAACTTGGAGCCATCGGAGATGTTATAGCGTCAAAGGAATTTCCTTCA 1248
Query 2368 AGGGCATCTGTCTTGGTCTTGCAACAGCAA 2397
|||| |||||||||||||||||||||||||
Sbjct 1249 AGGGTATCTGTCTTGGTCTTGCAACAGCAA 1278
Score = 340 bits (184), Expect = 2e-92
Identities = 232/254 (91%), Gaps = 7/254 (3%)
Strand=Plus/Plus
Query 625 TTGACAGATCTCAAGATCAACCATTCCGAGTTTGGACGAATGGTTCAGTCTTGTGCCGCG 684
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 46 TTGACAGATCTCAAGATCAAGCATTCCGAGTTTGGACGAATGGTTCAGTCTTGTGCCGCG 105
Query 685 GTCACTGACTTAGTAATCTTTATAATGGTCTCCGGGACCGTTCTTTTAAAAGGACAAAAA 744
|||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||
Sbjct 106 GTCACTGACTTAGTAATCTTTATAATGGCCTCCGGGACGGTTCTTTTAAAAGGACAAAAA 165
Query 745 GGTTTACCACATGGTATTGTTATCGTTTTGGTTATAGGCTTCTTGGTCTACATCGTAT-- 802
||||||||||||| ||| ||||| |||| | |||| | ||||||||||||||||||||
Sbjct 166 GGTTTACCACATGTTATGGTTATTGTTTCG-TTATCGTCTTCTTGGTCTACATCGTATAT 224
Query 803 --GGCCGGTCATGTTATGGATTATCAAGCAGACACCAGAAGGCAGGC-TGGTTAAAGATG 859
|||||| ||||||||||||||||| ||||| ||||||||||||| || ||||||| |
Sbjct 225 ATGGCCGGAAATGTTATGGATTATCAAACAGACTCCAGAAGGCAGGCCTG-TTAAAGAAG 283
Query 860 TCTACATTTACTTG 873
||||||| ||||||
Sbjct 284 TCTACATCTACTTG 297
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 90654783100
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5