BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G28180.1 Length=2602 Score E Sequences producing significant alignments: (Bits) Value Ahg481691 jgi|Araly1|481691|fgenesh2_kg.4__751__AT2G28180.1 3690 0.0 > Ahg481691 jgi|Araly1|481691|fgenesh2_kg.4__751__AT2G28180.1 Length=2613 Score = 3690 bits (1998), Expect = 0.0 Identities = 2425/2628 (92%), Gaps = 41/2628 (2%) Strand=Plus/Plus Query 1 ATTTATTTTGTTATCGTCTTCCCCATTTTGACAAGAA--CTCACTTAAGATTTTGA-AGT 57 |||| |||||||||||||||||||||||| ||||||| ||||| ||||||||| | ||| Sbjct 1 ATTTCTTTTGTTATCGTCTTCCCCATTTTCACAAGAACTCTCACATAAGATTTT-ATAGT 59 Query 58 CATGGAAATGGGGAACGGGACAGGACCCGGGATGTCGGGGGCTTTTAGTGGAGGCGGCAA 117 ||||| |||||||| |||||||||||||||||||||||||||||||||||||||||| | Sbjct 60 TATGGATATGGGGAATGGGACAGGACCCGGGATGTCGGGGGCTTTTAGTGGAGGCGGCGA 119 Query 118 CGAGATTTTGGGAATGGGAGGTGGCGGCG--G-CAT------AATGGGAGGCGGTGATAT 168 |||||| ||||||||||||||||||||| | || ||||| ||||||||| | Sbjct 120 CGAGATGATGGGAATGGGAGGTGGCGGCGACGTAATGACGGGAATGGTAGGCGGTGAGGT 179 Query 169 TTCACATATGAGTCCTGAAGTAAAATGGATATTTGAGATGGCTTGGTATGGTGAAACTGT 228 | | | |||||||||||||||| |||||||||||||||||||||||||||||||||| | Sbjct 180 TACGGAGATGAGTCCTGAAGTAAGATGGATATTTGAGATGGCTTGGTATGGTGAAACTTT 239 Query 229 AAGATATGATGGGTTAATTTGTGAGGAGCATCCCCCTAAGCTCTCTTCAGATGGTATTTG 288 |||| | |||||||| ||||| |||||||||||||||||||| ||||||||||||||||| Sbjct 240 AAGAGACGATGGGTTGATTTGCGAGGAGCATCCCCCTAAGCTGTCTTCAGATGGTATTTG 299 Query 289 GGAGAAACTTATTATTAAATCGGCAGGTCTATATTTTTGGCAATATCGTCTTCCGAAGCT 348 ||||||||||||| | ||| ||| |||||| ||||||||||||||||||||||||||||| Sbjct 300 GGAGAAACTTATTGTGAAAACGGTAGGTCTTTATTTTTGGCAATATCGTCTTCCGAAGCT 359 Query 349 CGAGATTGTCATCTTGCTCGTCTTCTTT-CTTTGGCAAGGCTTTAATATCTTGTTTAAGA 407 |||||||||||||||||||||||| ||| |||||||||| |||||||||| |||| |||| Sbjct 360 CGAGATTGTCATCTTGCTCGTCTT-TTTCCTTTGGCAAGCCTTTAATATCCTGTTCAAGA 418 Query 408 AATTGGGTCTTTCTATTCCCAAGTTATCCTCTATGATGCTTGCAGGGCTACTCTTGAATG 467 ||||| |||||||| |||||||||| |||||||||||||| || |||||||||||||||| Sbjct 419 AATTGCGTCTTTCTGTTCCCAAGTTCTCCTCTATGATGCTCGCTGGGCTACTCTTGAATG 478 Query 468 TTCTAGTTACTTTATCGGGAGAGAACTCGATCATTGCGGATATCTTGGTCACGAAAAACA 527 || ||||||||||||||||||| |||||| |||||| ||| ||||| ||||| ||||||| Sbjct 479 TTGTAGTTACTTTATCGGGAGACAACTCGCTCATTGGGGAGATCTTAGTCACCAAAAACA 538 Query 528 GAATCGACGTAGCAGGA-TGCCTTGGATCATTTGGATTCTTGATTTTCTGGTTCCTCAAA 586 || ||||| |||||| | | |||||||||||||||||||||||||||||||||||||||| Sbjct 539 GAGTCGACATAGCAGCACT-CCTTGGATCATTTGGATTCTTGATTTTCTGGTTCCTCAAA 597 Query 587 GGTGT-AAGAATGGACGTCAAGAGAATCTTCAAGGCTGAAGCAAAAGCAAGAGTCACTGG 645 ||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 598 GGTGTGAA-AATGGACGTCAAGAGAATCTTCAAGGCTGAAGCAAAAGCAAGAGTCACTGG 656 Query 646 AGTTGCAGCGGTTACTTTCCCTATAGTTGTTGGCTTCTTGCTTTTCAATCTCAAATCAGC 705 ||||||| ||||||||||||||||| ||||||||||||| |||| | ||||||||||| Sbjct 657 AGTTGCATCGGTTACTTTCCCTATACTTGTTGGCTTCTTCCTTTACTCGCTCAAATCAGC 716 Query 706 TAAGAATCGACCTCTCACTTTCCAA-GAGTATGATGTAATGCTACTAATGGAAAGCATCA 764 | |||||||||| |||| | |||| |||||||| ||||||| |||||||||||||||| Sbjct 717 TGAGAATCGACCGCTCA-GTGCCAACGAGTATGACATAATGCTGCTAATGGAAAGCATCA 775 Query 765 CGTCCTTCTCGGGGATCGCAAGACTCTTGCGTGACCTTGGCATGAACCATTCATCTATTG 824 | ||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||| Sbjct 776 CATCCTTCTCGGGGATCGCAAGACTCTTGCGCGACCTCGGCATGAACCATTCATCTATTG 835 Query 825 GCCGGGTTGCTTTATCCTCAGCCTTAGTCTCTGATATAGTTGGACTCCTGCTCTTGATTG 884 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||| | | Sbjct 836 GCCGGGTCGCTTTATCCTCAGCCTTAGTCTCTGATATAGTTGGACTCCTGCTCTTGGTGG 895 Query 885 CGAACGTTTCTAGAAG-TTCAGCAA--C-TTTAGCTGATGGTTTGGCTATACTTACAGAG 940 ||||||||||||| || |||| || | |||| ||||||| || |||||||| ||| Sbjct 896 CGAACGTTTCTAG-AGTTTCA--AAGTCTTTTA-ATGATGGTCTGTCTATACTTTTTGAG 951 Query 941 ATAACCTTATTCCTCGTCATTGCATTTGCGGTTGTGAGGCCGATAATGTTCAAAATAATA 1000 ||| ||||||| ||||||||||| ||||||| |||||||||| ||||||| ||| |||| Sbjct 952 ATATCCTTATTTCTCGTCATTGCGTTTGCGGCTGTGAGGCCGTTAATGTTTAAAGTAATC 1011 Query 1001 AAGCGGAAAGGAGAAGGAAGACCAATCGAAGACAAATACATCCACGGGGTTCTCGTCTTG 1060 ||||||||| ||||||| |||||||||||||||||||||||| ||||| ||||||||||| Sbjct 1012 AAGCGGAAACGAGAAGGGAGACCAATCGAAGACAAATACATCTACGGGATTCTCGTCTTG 1071 Query 1061 GTTTGCTTATCTTGTATGTATTGGGAAGATCTTAGCCAGTTTCCTCCACTTGGAGCCTTC 1120 |||||||||||||||||||||||||||||||| || |||||||||||||||||||||||| Sbjct 1072 GTTTGCTTATCTTGTATGTATTGGGAAGATCTCAGTCAGTTTCCTCCACTTGGAGCCTTC 1131 Query 1121 TTTCTTGGTCTCGCCATTCCCAATGGACCTCCTATTGGATCTGCATTGGTCGAACGATTA 1180 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1132 TTTCTTGGCCTCGCCATTCCCAATGGACCTCCTATTGGATCTGCATTGGTCGAACGATTA 1191 Query 1181 GAAAGCTTCAATTTTGGTATCATATTACCTCTTTTCTTAACAGCCGTTATGCTCAGGACT 1240 || ||||||||||||||||||||||| ||||| |||||| ||||| |||||||||||||| Sbjct 1192 GAGAGCTTCAATTTTGGTATCATATTGCCTCTCTTCTTATCAGCCATTATGCTCAGGACT 1251 Query 1241 GATACCACTGCTTGGAAAGGC-GCTTTGACATTCTTTAGTGGCGATGATAAGAAATTTGC 1299 |||| |||| ||||||||||| | ||||||||||||||| ||||||||||||||||||| Sbjct 1252 GATATCACTTCTTGGAAAGGCTG-TTTGACATTCTTTAGCAGCGATGATAAGAAATTTGC 1310 Query 1300 GGTTGCGTCTCTCGTCTTGCTCATTTTCTTGTTGAAGCTCTCTGTCTCAGTCATTGTTCC 1359 ||||||||||||| |||||||||| |||||||||||||||||||||||||| ||||| || Sbjct 1311 GGTTGCGTCTCTCATCTTGCTCATCTTCTTGTTGAAGCTCTCTGTCTCAGTGATTGTACC 1370 Query 1360 TTACCTCTATAAAATGCCGTTGAGAGACTCTATTATCCTTGCCCTAATAATGTCTCATAA 1419 ||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||| Sbjct 1371 TTACCTCTATAAAATGCCGTTGAGAGACTCTATTATCCTTGCCCTTATCATGTCTCATAA 1430 Query 1420 GGGTATTATCGAACTCAGCTTCTACCTTTTCTCTCTA-AGCCTCAAGTTGGTAACCAAAG 1478 |||||||||||||||||||||||||||||||||| || |||||| | |||||| ||||| Sbjct 1431 GGGTATTATCGAACTCAGCTTCTACCTTTTCTCT-TACAGCCTCGTGATGGTAAGCAAAG 1489 Query 1479 ATACATTCTCAATTCTAGTCTTGTCCATTGTCCTCAACTCTCTGCTCATACCAATGGCGA 1538 ||||||||||||| ||||||||||||||||||||||||||| || |||||||| | | || Sbjct 1490 ATACATTCTCAATCCTAGTCTTGTCCATTGTCCTCAACTCTGTGTTCATACCAGTAGTGA 1549 Query 1539 TCGGGTTTCTCTACGACCCATCTAAACAATTCATATGCTACCAAAAGAGAAATTTAGCGA 1598 |||||||||||||||| |||||||| |||||||| ||||||||||||||||||||||||| Sbjct 1550 TCGGGTTTCTCTACGATCCATCTAAGCAATTCATGTGCTACCAAAAGAGAAATTTAGCGA 1609 Query 1599 GTATGAAGAACATG-GGAGAGCTAAAGACTCTTGTGTGCATCCATAGACCAGACCACATA 1657 |||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1610 GTATGAAGAACA-GTGGAGAGCTAAAGACTCTTGTGTGCATCCATAGACCAGACCACATA 1668 Query 1658 TCTTCCATGATCAACCTTCTT-GAAGCTTCTTATCAATCCGAAGACAGTCCTCTCACTTG 1716 |||||||||||||||||| || ||||||||||||||||||||||| || ||||||||||| Sbjct 1669 TCTTCCATGATCAACCTT-TTAGAAGCTTCTTATCAATCCGAAGAGAGCCCTCTCACTTG 1727 Query 1717 CTACGTCCTTCACCTCGTCGAGTTACGAGGTCAAGACGTTCCCACTTTGATCTCACACAA 1776 |||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 1728 CTACGTGCTTCACCTCGTCGAGTTACAAGGTCAAGACGTTCCCACTTTGATCTCACACAA 1787 Query 1777 AGTTCAGAAACTCGGAGTCGGGGCTGGAAATAAATATTCCGAAAATGTCATCCTCTCTTT 1836 |||||||||||| ||||||||| ||||||| |||||||||||||| ||||| |||||||| Sbjct 1788 AGTTCAGAAACTAGGAGTCGGGTCTGGAAAGAAATATTCCGAAAACGTCATTCTCTCTTT 1847 Query 1837 TGAACATTTCCACCGTTCTGTCTGCAGTTCCATTTCCATAGACACATTCACTTGCATCGC 1896 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 1848 TGAACATTTCCACCGTTATGTCTGCAGTTCCATTTCCATAGACACATTCACTTGCATCGC 1907 Query 1897 AAACGCAAACCATATGCAGGATGACATTTGTTGGCTAGCTCTTGATAAAGCTGTCACGCT 1956 |||||| ||||||||||||||||| |||||||||||||||||||||||||||||||| || Sbjct 1908 AAACGCGAACCATATGCAGGATGATATTTGTTGGCTAGCTCTTGATAAAGCTGTCACACT 1967 Query 1957 TATCATTCTTCCTTTTCACCGGACTTGGTCACTTGACCGAACATCCATCGTATCCGACGT 2016 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 1968 TATCATTCTTCCTTTCCACCGGACTTGGTCACTTGACCGAACATCCATCGTATCCGACGT 2027 Query 2017 TGAGGCGATCCGATTTCTGAATGTCAACGTCTTGAAACAAGCACCTTGCTCTGTCGGCAT 2076 |||| || ||||||||| ||| |||| |||||||||||||| ||||||||||||||||| Sbjct 2028 TGAGATGACCCGATTTCTCAATCTCAATGTCTTGAAACAAGCTCCTTGCTCTGTCGGCAT 2087 Query 2077 TCTTATCGAACGCCATCTCGTTAACAAGAAGCAAGAACCACATG-AAAGCCTTAAGGTGT 2135 ||||||||||||||||||||||||||| ||||||||||| || | ||||||||||||||| Sbjct 2088 TCTTATCGAACGCCATCTCGTTAACAAAAAGCAAGAACCGCA-GCAAAGCCTTAAGGTGT 2146 Query 2136 GTGTAATATTCGTGGGAGGAAAAGACGATAGGGAAGCTTTGGCCTTTGCGAAGCGAATGG 2195 || |||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 2147 GTACAATATTCGTGGGAGGAAAAGACGATAGGGAAGCTCTGGCCTTTGCGAAGCGAATGG 2206 Query 2196 CCCGT-CAAGAGAACGTAACATTAACAGTTCTACGCCTCCTAGCATCAGGAAAGAGCAAA 2254 ||| | ||||||||||||||||||||||||||||||||||| ||||| |||||||||||| Sbjct 2207 CCC-TACAAGAGAACGTAACATTAACAGTTCTACGCCTCCTGGCATCGGGAAAGAGCAAA 2265 Query 2255 GACGCGACAGGATGGGATCAAATGCTTGACACGGTGGAACTAAGAGAGTTGATTAAAAGC 2314 || ||||||||||||||||||||||||||||| |||||||||||||||||||| |||||| Sbjct 2266 GAAGCGACAGGATGGGATCAAATGCTTGACACAGTGGAACTAAGAGAGTTGATGAAAAGC 2325 Query 2315 AACAATGCCGGAATGGTAAAAGAAGAAACATCAACAATTTATTTGGAACAAGAGATATTG 2374 ||| ||||||||| |||||||||||||||||||||||||| |||||||||||||||||| Sbjct 2326 AACGATGCCGGAACAGTAAAAGAAGAAACATCAACAATTTACTTGGAACAAGAGATATTG 2385 Query 2375 GATGGAGCGGATACGTCAATGCTTCTACGTTCCATGGCTTTCGATTACGATCTTTTCGTC 2434 |||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||| Sbjct 2386 GATGGAGCGGATACGTCAATGCTTCTACGTTCCATGGCATTCGATTATGATCTTTTCGTC 2445 Query 2435 GTGGGAAGAACATGCGGCGAGAACCACGAGGCAACCAAAGGTATAGAGAATTGGTGTGAG 2494 |||||||||||||| ||||| |||||||||||||| | ||||||||||||||||||||| Sbjct 2446 GTGGGAAGAACATGTGGCGAAAACCACGAGGCAACTAGCGGTATAGAGAATTGGTGTGAG 2505 Query 2495 TTTGAGGAGCTTGGAGTCATTGGTGATTTCTTGGCCTCGCCGGATTTTCCGAGTAAAACA 2554 ||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| Sbjct 2506 TTTGAGGAGCTTGGAGTCATTGGTGATTTCTTGGCCTCGCCGGATTTCCCGAGCAAAACG 2565 Query 2555 TCGGTGTTAGTAGTGCAACAACAACGAACGGTAGCCAATAATAATTAG 2602 |||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 2566 TCGGTGTTAGTAGTGCAACAACAACGAACGGTAGTCAATAATAATTAG 2613 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 98120471120 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5