BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G28180.1
Length=2602
Score E
Sequences producing significant alignments: (Bits) Value
Ahg481691 jgi|Araly1|481691|fgenesh2_kg.4__751__AT2G28180.1 3690 0.0
> Ahg481691 jgi|Araly1|481691|fgenesh2_kg.4__751__AT2G28180.1
Length=2613
Score = 3690 bits (1998), Expect = 0.0
Identities = 2425/2628 (92%), Gaps = 41/2628 (2%)
Strand=Plus/Plus
Query 1 ATTTATTTTGTTATCGTCTTCCCCATTTTGACAAGAA--CTCACTTAAGATTTTGA-AGT 57
|||| |||||||||||||||||||||||| ||||||| ||||| ||||||||| | |||
Sbjct 1 ATTTCTTTTGTTATCGTCTTCCCCATTTTCACAAGAACTCTCACATAAGATTTT-ATAGT 59
Query 58 CATGGAAATGGGGAACGGGACAGGACCCGGGATGTCGGGGGCTTTTAGTGGAGGCGGCAA 117
||||| |||||||| |||||||||||||||||||||||||||||||||||||||||| |
Sbjct 60 TATGGATATGGGGAATGGGACAGGACCCGGGATGTCGGGGGCTTTTAGTGGAGGCGGCGA 119
Query 118 CGAGATTTTGGGAATGGGAGGTGGCGGCG--G-CAT------AATGGGAGGCGGTGATAT 168
|||||| ||||||||||||||||||||| | || ||||| ||||||||| |
Sbjct 120 CGAGATGATGGGAATGGGAGGTGGCGGCGACGTAATGACGGGAATGGTAGGCGGTGAGGT 179
Query 169 TTCACATATGAGTCCTGAAGTAAAATGGATATTTGAGATGGCTTGGTATGGTGAAACTGT 228
| | | |||||||||||||||| |||||||||||||||||||||||||||||||||| |
Sbjct 180 TACGGAGATGAGTCCTGAAGTAAGATGGATATTTGAGATGGCTTGGTATGGTGAAACTTT 239
Query 229 AAGATATGATGGGTTAATTTGTGAGGAGCATCCCCCTAAGCTCTCTTCAGATGGTATTTG 288
|||| | |||||||| ||||| |||||||||||||||||||| |||||||||||||||||
Sbjct 240 AAGAGACGATGGGTTGATTTGCGAGGAGCATCCCCCTAAGCTGTCTTCAGATGGTATTTG 299
Query 289 GGAGAAACTTATTATTAAATCGGCAGGTCTATATTTTTGGCAATATCGTCTTCCGAAGCT 348
||||||||||||| | ||| ||| |||||| |||||||||||||||||||||||||||||
Sbjct 300 GGAGAAACTTATTGTGAAAACGGTAGGTCTTTATTTTTGGCAATATCGTCTTCCGAAGCT 359
Query 349 CGAGATTGTCATCTTGCTCGTCTTCTTT-CTTTGGCAAGGCTTTAATATCTTGTTTAAGA 407
|||||||||||||||||||||||| ||| |||||||||| |||||||||| |||| ||||
Sbjct 360 CGAGATTGTCATCTTGCTCGTCTT-TTTCCTTTGGCAAGCCTTTAATATCCTGTTCAAGA 418
Query 408 AATTGGGTCTTTCTATTCCCAAGTTATCCTCTATGATGCTTGCAGGGCTACTCTTGAATG 467
||||| |||||||| |||||||||| |||||||||||||| || ||||||||||||||||
Sbjct 419 AATTGCGTCTTTCTGTTCCCAAGTTCTCCTCTATGATGCTCGCTGGGCTACTCTTGAATG 478
Query 468 TTCTAGTTACTTTATCGGGAGAGAACTCGATCATTGCGGATATCTTGGTCACGAAAAACA 527
|| ||||||||||||||||||| |||||| |||||| ||| ||||| ||||| |||||||
Sbjct 479 TTGTAGTTACTTTATCGGGAGACAACTCGCTCATTGGGGAGATCTTAGTCACCAAAAACA 538
Query 528 GAATCGACGTAGCAGGA-TGCCTTGGATCATTTGGATTCTTGATTTTCTGGTTCCTCAAA 586
|| ||||| |||||| | | ||||||||||||||||||||||||||||||||||||||||
Sbjct 539 GAGTCGACATAGCAGCACT-CCTTGGATCATTTGGATTCTTGATTTTCTGGTTCCTCAAA 597
Query 587 GGTGT-AAGAATGGACGTCAAGAGAATCTTCAAGGCTGAAGCAAAAGCAAGAGTCACTGG 645
||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 598 GGTGTGAA-AATGGACGTCAAGAGAATCTTCAAGGCTGAAGCAAAAGCAAGAGTCACTGG 656
Query 646 AGTTGCAGCGGTTACTTTCCCTATAGTTGTTGGCTTCTTGCTTTTCAATCTCAAATCAGC 705
||||||| ||||||||||||||||| ||||||||||||| |||| | |||||||||||
Sbjct 657 AGTTGCATCGGTTACTTTCCCTATACTTGTTGGCTTCTTCCTTTACTCGCTCAAATCAGC 716
Query 706 TAAGAATCGACCTCTCACTTTCCAA-GAGTATGATGTAATGCTACTAATGGAAAGCATCA 764
| |||||||||| |||| | |||| |||||||| ||||||| ||||||||||||||||
Sbjct 717 TGAGAATCGACCGCTCA-GTGCCAACGAGTATGACATAATGCTGCTAATGGAAAGCATCA 775
Query 765 CGTCCTTCTCGGGGATCGCAAGACTCTTGCGTGACCTTGGCATGAACCATTCATCTATTG 824
| ||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||
Sbjct 776 CATCCTTCTCGGGGATCGCAAGACTCTTGCGCGACCTCGGCATGAACCATTCATCTATTG 835
Query 825 GCCGGGTTGCTTTATCCTCAGCCTTAGTCTCTGATATAGTTGGACTCCTGCTCTTGATTG 884
||||||| |||||||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct 836 GCCGGGTCGCTTTATCCTCAGCCTTAGTCTCTGATATAGTTGGACTCCTGCTCTTGGTGG 895
Query 885 CGAACGTTTCTAGAAG-TTCAGCAA--C-TTTAGCTGATGGTTTGGCTATACTTACAGAG 940
||||||||||||| || |||| || | |||| ||||||| || |||||||| |||
Sbjct 896 CGAACGTTTCTAG-AGTTTCA--AAGTCTTTTA-ATGATGGTCTGTCTATACTTTTTGAG 951
Query 941 ATAACCTTATTCCTCGTCATTGCATTTGCGGTTGTGAGGCCGATAATGTTCAAAATAATA 1000
||| ||||||| ||||||||||| ||||||| |||||||||| ||||||| ||| ||||
Sbjct 952 ATATCCTTATTTCTCGTCATTGCGTTTGCGGCTGTGAGGCCGTTAATGTTTAAAGTAATC 1011
Query 1001 AAGCGGAAAGGAGAAGGAAGACCAATCGAAGACAAATACATCCACGGGGTTCTCGTCTTG 1060
||||||||| ||||||| |||||||||||||||||||||||| ||||| |||||||||||
Sbjct 1012 AAGCGGAAACGAGAAGGGAGACCAATCGAAGACAAATACATCTACGGGATTCTCGTCTTG 1071
Query 1061 GTTTGCTTATCTTGTATGTATTGGGAAGATCTTAGCCAGTTTCCTCCACTTGGAGCCTTC 1120
|||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct 1072 GTTTGCTTATCTTGTATGTATTGGGAAGATCTCAGTCAGTTTCCTCCACTTGGAGCCTTC 1131
Query 1121 TTTCTTGGTCTCGCCATTCCCAATGGACCTCCTATTGGATCTGCATTGGTCGAACGATTA 1180
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1132 TTTCTTGGCCTCGCCATTCCCAATGGACCTCCTATTGGATCTGCATTGGTCGAACGATTA 1191
Query 1181 GAAAGCTTCAATTTTGGTATCATATTACCTCTTTTCTTAACAGCCGTTATGCTCAGGACT 1240
|| ||||||||||||||||||||||| ||||| |||||| ||||| ||||||||||||||
Sbjct 1192 GAGAGCTTCAATTTTGGTATCATATTGCCTCTCTTCTTATCAGCCATTATGCTCAGGACT 1251
Query 1241 GATACCACTGCTTGGAAAGGC-GCTTTGACATTCTTTAGTGGCGATGATAAGAAATTTGC 1299
|||| |||| ||||||||||| | ||||||||||||||| |||||||||||||||||||
Sbjct 1252 GATATCACTTCTTGGAAAGGCTG-TTTGACATTCTTTAGCAGCGATGATAAGAAATTTGC 1310
Query 1300 GGTTGCGTCTCTCGTCTTGCTCATTTTCTTGTTGAAGCTCTCTGTCTCAGTCATTGTTCC 1359
||||||||||||| |||||||||| |||||||||||||||||||||||||| ||||| ||
Sbjct 1311 GGTTGCGTCTCTCATCTTGCTCATCTTCTTGTTGAAGCTCTCTGTCTCAGTGATTGTACC 1370
Query 1360 TTACCTCTATAAAATGCCGTTGAGAGACTCTATTATCCTTGCCCTAATAATGTCTCATAA 1419
||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||
Sbjct 1371 TTACCTCTATAAAATGCCGTTGAGAGACTCTATTATCCTTGCCCTTATCATGTCTCATAA 1430
Query 1420 GGGTATTATCGAACTCAGCTTCTACCTTTTCTCTCTA-AGCCTCAAGTTGGTAACCAAAG 1478
|||||||||||||||||||||||||||||||||| || |||||| | |||||| |||||
Sbjct 1431 GGGTATTATCGAACTCAGCTTCTACCTTTTCTCT-TACAGCCTCGTGATGGTAAGCAAAG 1489
Query 1479 ATACATTCTCAATTCTAGTCTTGTCCATTGTCCTCAACTCTCTGCTCATACCAATGGCGA 1538
||||||||||||| ||||||||||||||||||||||||||| || |||||||| | | ||
Sbjct 1490 ATACATTCTCAATCCTAGTCTTGTCCATTGTCCTCAACTCTGTGTTCATACCAGTAGTGA 1549
Query 1539 TCGGGTTTCTCTACGACCCATCTAAACAATTCATATGCTACCAAAAGAGAAATTTAGCGA 1598
|||||||||||||||| |||||||| |||||||| |||||||||||||||||||||||||
Sbjct 1550 TCGGGTTTCTCTACGATCCATCTAAGCAATTCATGTGCTACCAAAAGAGAAATTTAGCGA 1609
Query 1599 GTATGAAGAACATG-GGAGAGCTAAAGACTCTTGTGTGCATCCATAGACCAGACCACATA 1657
|||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1610 GTATGAAGAACA-GTGGAGAGCTAAAGACTCTTGTGTGCATCCATAGACCAGACCACATA 1668
Query 1658 TCTTCCATGATCAACCTTCTT-GAAGCTTCTTATCAATCCGAAGACAGTCCTCTCACTTG 1716
|||||||||||||||||| || ||||||||||||||||||||||| || |||||||||||
Sbjct 1669 TCTTCCATGATCAACCTT-TTAGAAGCTTCTTATCAATCCGAAGAGAGCCCTCTCACTTG 1727
Query 1717 CTACGTCCTTCACCTCGTCGAGTTACGAGGTCAAGACGTTCCCACTTTGATCTCACACAA 1776
|||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1728 CTACGTGCTTCACCTCGTCGAGTTACAAGGTCAAGACGTTCCCACTTTGATCTCACACAA 1787
Query 1777 AGTTCAGAAACTCGGAGTCGGGGCTGGAAATAAATATTCCGAAAATGTCATCCTCTCTTT 1836
|||||||||||| ||||||||| ||||||| |||||||||||||| ||||| ||||||||
Sbjct 1788 AGTTCAGAAACTAGGAGTCGGGTCTGGAAAGAAATATTCCGAAAACGTCATTCTCTCTTT 1847
Query 1837 TGAACATTTCCACCGTTCTGTCTGCAGTTCCATTTCCATAGACACATTCACTTGCATCGC 1896
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1848 TGAACATTTCCACCGTTATGTCTGCAGTTCCATTTCCATAGACACATTCACTTGCATCGC 1907
Query 1897 AAACGCAAACCATATGCAGGATGACATTTGTTGGCTAGCTCTTGATAAAGCTGTCACGCT 1956
|||||| ||||||||||||||||| |||||||||||||||||||||||||||||||| ||
Sbjct 1908 AAACGCGAACCATATGCAGGATGATATTTGTTGGCTAGCTCTTGATAAAGCTGTCACACT 1967
Query 1957 TATCATTCTTCCTTTTCACCGGACTTGGTCACTTGACCGAACATCCATCGTATCCGACGT 2016
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1968 TATCATTCTTCCTTTCCACCGGACTTGGTCACTTGACCGAACATCCATCGTATCCGACGT 2027
Query 2017 TGAGGCGATCCGATTTCTGAATGTCAACGTCTTGAAACAAGCACCTTGCTCTGTCGGCAT 2076
|||| || ||||||||| ||| |||| |||||||||||||| |||||||||||||||||
Sbjct 2028 TGAGATGACCCGATTTCTCAATCTCAATGTCTTGAAACAAGCTCCTTGCTCTGTCGGCAT 2087
Query 2077 TCTTATCGAACGCCATCTCGTTAACAAGAAGCAAGAACCACATG-AAAGCCTTAAGGTGT 2135
||||||||||||||||||||||||||| ||||||||||| || | |||||||||||||||
Sbjct 2088 TCTTATCGAACGCCATCTCGTTAACAAAAAGCAAGAACCGCA-GCAAAGCCTTAAGGTGT 2146
Query 2136 GTGTAATATTCGTGGGAGGAAAAGACGATAGGGAAGCTTTGGCCTTTGCGAAGCGAATGG 2195
|| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 2147 GTACAATATTCGTGGGAGGAAAAGACGATAGGGAAGCTCTGGCCTTTGCGAAGCGAATGG 2206
Query 2196 CCCGT-CAAGAGAACGTAACATTAACAGTTCTACGCCTCCTAGCATCAGGAAAGAGCAAA 2254
||| | ||||||||||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct 2207 CCC-TACAAGAGAACGTAACATTAACAGTTCTACGCCTCCTGGCATCGGGAAAGAGCAAA 2265
Query 2255 GACGCGACAGGATGGGATCAAATGCTTGACACGGTGGAACTAAGAGAGTTGATTAAAAGC 2314
|| ||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||
Sbjct 2266 GAAGCGACAGGATGGGATCAAATGCTTGACACAGTGGAACTAAGAGAGTTGATGAAAAGC 2325
Query 2315 AACAATGCCGGAATGGTAAAAGAAGAAACATCAACAATTTATTTGGAACAAGAGATATTG 2374
||| ||||||||| |||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 2326 AACGATGCCGGAACAGTAAAAGAAGAAACATCAACAATTTACTTGGAACAAGAGATATTG 2385
Query 2375 GATGGAGCGGATACGTCAATGCTTCTACGTTCCATGGCTTTCGATTACGATCTTTTCGTC 2434
|||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct 2386 GATGGAGCGGATACGTCAATGCTTCTACGTTCCATGGCATTCGATTATGATCTTTTCGTC 2445
Query 2435 GTGGGAAGAACATGCGGCGAGAACCACGAGGCAACCAAAGGTATAGAGAATTGGTGTGAG 2494
|||||||||||||| ||||| |||||||||||||| | |||||||||||||||||||||
Sbjct 2446 GTGGGAAGAACATGTGGCGAAAACCACGAGGCAACTAGCGGTATAGAGAATTGGTGTGAG 2505
Query 2495 TTTGAGGAGCTTGGAGTCATTGGTGATTTCTTGGCCTCGCCGGATTTTCCGAGTAAAACA 2554
||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct 2506 TTTGAGGAGCTTGGAGTCATTGGTGATTTCTTGGCCTCGCCGGATTTCCCGAGCAAAACG 2565
Query 2555 TCGGTGTTAGTAGTGCAACAACAACGAACGGTAGCCAATAATAATTAG 2602
|||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 2566 TCGGTGTTAGTAGTGCAACAACAACGAACGGTAGTCAATAATAATTAG 2613
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 98120471120
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5