BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G28200.1
Length=1158
Score E
Sequences producing significant alignments: (Bits) Value
Ahg481690 jgi|Araly1|481690|fgenesh2_kg.4__750__AT2G28200.1 1650 0.0
> Ahg481690 jgi|Araly1|481690|fgenesh2_kg.4__750__AT2G28200.1
Length=1120
Score = 1650 bits (893), Expect = 0.0
Identities = 1069/1149 (93%), Gaps = 31/1149 (3%)
Strand=Plus/Plus
Query 1 ACTGCctctcttctctcttctcttctgtctctctctTGTTAGTTCACTCCACATAATAAA 60
|||||||||||||||||| ||| || ||||| ||||||||||||||||||||||||| |
Sbjct 1 ACTGCCTCTCTTCTCTCTGCTC-TC--TCTCTTTCTTGTTAGTTCACTCCACATAATATA 57
Query 61 CACCAAAGATTTCATTCTCTTCTCCATAATTTCGAAgtttcttgaattgggtttgtttct 120
|||||| ||||||||||| ||||||| | |||||||||||||| ||||||||||||||||
Sbjct 58 CACCAACGATTTCATTCTTTTCTCCACAGTTTCGAAGTTTCTTCAATTGGGTTTGTTTCT 117
Query 121 tgatttgtttcttgaattgggttttggtcttcttttcttACTATATTTGGATATGATGAT 180
||||| ||||||||||||||||||| |||||||||| ||||||| |||||||||||||||
Sbjct 118 TGATTGGTTTCTTGAATTGGGTTTTAGTCTTCTTTTTTTACTATTTTTGGATATGATGAT 177
Query 181 GGGTCAAGATGAGGTTGGGAGTGATCAGACGCAAATCATAAAAGGGAAACGTACGAAGCG 240
|||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||
Sbjct 178 GGGTCAAGATGAGGTTGGCAGTGATCAGACGCAAATCATAAAAGGGAAGCGTACGAAGCG 237
Query 241 ACAAAGATCGTCTTCGACGTTTGTGGTGACGGCGGCGACAACAGTGACTTCAACAAGTTC 300
||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 238 ACAGAGATCGTCTTCGACGTTTGTGGTGACGGCGGCGACAACAGTGACCTCAACAAGTTC 297
Query 301 ATCGGCCGGTGGAAGTGGAGGAGAAAGAGCTGTTTCAGATGAATACAACTCGGCGGTTTC 360
||| ||||||||||| || |||| |||||| ||||| |||||||||||||||||||||||
Sbjct 298 ATCAGCCGGTGGAAGCGGTGGAGGAAGAGCGGTTTCTGATGAATACAACTCGGCGGTTTC 357
Query 361 GTCTCCGGTGACTACTGATTGTACGCAAGAAGAAGAAGACATGGCGATTTGTCTCATCAT 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 358 GTCTCCGGTGACTACTGATTGTACGCAAGAAGAAGAAGACATGGCGATTTGTCTCATCAT 417
Query 421 GTTAGCTCGTGGGACAGTTCTTCCATCGCCGGATCTCAAGAACTCGAGAAAAATTCATCA 480
||| |||||||| || ||||||||||| ||||||||||||||||||||||||| ||||||
Sbjct 418 GTTGGCTCGTGGAACGGTTCTTCCATCACCGGATCTCAAGAACTCGAGAAAAACTCATCA 477
Query 481 GAAGATTTCGTCGGAGAATTCTAGTTTCTATGTGTACGAGTGTAAAACGTGTAACCGGAC 540
|||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||
Sbjct 478 GAAGATTTCGTCGGAGAATTCTAGTTTCTATGTGTATGAGTGTAAAACATGTAACCGGAC 537
Query 541 GTTTTCGTCGTTCCAAGCACTTGGTGGACACAGAGCGAGCCACAAGAAGCCGAGGACGTC 600
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 538 GTTTTCGTCGTTCCAAGCACTTGGTGGACACAGAGCAAGCCACAAGAAGCCGAGGACGTC 597
Query 601 GACTGAGGAAAAGACTAGACTACCCCTGACGCAACCCAAGTCTAGTGCATCAGAAGAAGG 660
||| ||||||||||||||| ||||||||| |||||||||||||||| |||||||||||
Sbjct 598 GACAGAGGAAAAGACTAGATTACCCCTGATGCAACCCAAGTCTAGTTTGTCAGAAGAAGG 657
Query 661 GCAAAACAGTCATTTCAAAGTTTCCGGCTCAGCCCTAGCTTCACAGGCAAGTAACATCAT 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 658 GCAAAACAGTCATTTCAAAGTTTCCGGCTCAGCCCTAGCTTCACAGGCAAGTAACATCAT 717
Query 721 CAACAAGGCAAACAAAGTACACGAGTGTTCCATCTGCGGTTCTGAGTTCACTTCCGGGCA 780
||||||||| || ||||||||||||||||||||||| |||||||||||||||||||| ||
Sbjct 718 CAACAAGGCCAATAAAGTACACGAGTGTTCCATCTGTGGTTCTGAGTTCACTTCCGGTCA 777
Query 781 AGCTCTCGGTGGTCACATGAGGCGGCACAGGACAGCCGTAACCACGATTAGCCCCGTTGC 840
||| || |||||||||||||||||||||||||||||| | |||| | | |
Sbjct 778 AGCGCTTGGTGGTCACATGAGGCGGCACAGGACAGCC--A-CCAC------C---G---C 822
Query 841 AGCCACCGCAGAAGTAAGCAGAAACAGTACAGAGGAAGAGATTGAGATCAATATAGGCCG 900
| | | | || |||||||||||||||||||||||||||||||| |||||||||||
Sbjct 823 -G-----G-A-A-GTTAGCAGAAACAGTACAGAGGAAGAGATTGAGATAAATATAGGCCG 873
Query 901 TTCGATGGAACAGCAGAGGAAATATCTACCGTTGGATCTTAATCTACCAGCACCAGAAGA 960
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 874 TTCGATGGAACAGCAGAGGAAATATCTACCCTTGGATCTTAATCTACCAGCACCAGAAGA 933
Query 961 TGATCTAAGAGAGTCAAAGTTTCAAGGGATAGTATTCTCAGCAACACCAGCGTTAATAGA 1020
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 934 TGATCTAAGAGAGTCAAAGTTTCAAGGGATAGTATTCTCAGCAACACCAGCGTTAATAGA 993
Query 1021 TTGTCATTACTAGTTGtttttttt--ACTACATAATATGATGAAATATTTGTGAATTCTT 1078
||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||
Sbjct 994 CTGTCATTACTAGTTGTTTTTTTTTTACTACATAATATGATGAA-TATTTGTGAATTCTT 1052
Query 1079 CTTACTTACTACTATATTGTTGATCATTGGAATTAttttttttttAAATTGAATCAAATA 1138
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1053 CTTACTTACTACTATATTGTTGATCATTGGAATTATTTTTTAAA-AAATTGAATCAAATA 1111
Query 1139 TTATCATTT 1147
|||||||||
Sbjct 1112 TTATCATTT 1120
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43193264961
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5