BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G28210.1
Length=736
Score E
Sequences producing significant alignments: (Bits) Value
Ahg320571 jgi|Araly1|320571|fgenesh1_pm.C_scaffold_4000628 876 0.0
> Ahg320571 jgi|Araly1|320571|fgenesh1_pm.C_scaffold_4000628
Length=747
Score = 876 bits (474), Expect = 0.0
Identities = 561/604 (93%), Gaps = 2/604 (0%)
Strand=Plus/Plus
Query 1 ATGGATGAATATGTAGAGGATGAACACGAATTCAGCTACGAATGGAACCAAGAGAACGGG 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGATGAATATGTAGAGGATGAACACGAATTCAGCTACGAATGGAACCAAGAGAACGGG 60
Query 61 CCAGCGAAATGGGGAAAGCTAAGACCGGAATGGAAAATGTGCGGAAAAGGAGAAATGCAA 120
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 61 CCAGCGAAATGGGGAAAGCTAAGACCGGAATGGAAAATGTGTGGAAAAGGAGAAATGCAA 120
Query 121 TCGCCTATTGATCTTATGAACAAAAGAGTTAGACTTGTTACTCATCTTAAAAAGCTTACT 180
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 121 TCGCCTATTGATCTTATGAACAAGAGAGTTAGACTTGTTACTCATCTTAAAAAGCTTACT 180
Query 181 AGACACTACAAACCTTGTAACGCCACTCTCAAAAATAGAGGCCATGATATGATGCTGAAA 240
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 AGAGACTACAAACCTTGTAACGCCACTCTCAAAAATAGAGGCCATGATATGATGCTGAAA 240
Query 241 TTTGGAGAAGAAGGGTCAGGGAGTATTACGGTCAATGGAACTGAGTATAAACTCTTACAG 300
|||||||||||||||||||| ||||||| |||||||||||||||||||||||| ||||
Sbjct 241 TTTGGAGAAGAAGGGTCAGGAAGTATTAAAGTCAATGGAACTGAGTATAAACTCCTACAA 300
Query 301 CTTCATTGGCATTCTCCCTCTGAACATACTATGAATGGAAGAAGGTTTGCTCTCGAGCTA 360
|||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct 301 CTTCATTGGCATTCTCCCTCGGAACATACTATCAATGGAAGAAGGTTTGCTCTCGAGCTT 360
Query 361 CACATGGTTCACGAAAACATTAACGGAAGTTTGGCTGTAGTCACAGTCCTCTACAAAATC 420
|||||||||||||||||||| ||||| ||||||||||||||||||| |||||||||||
Sbjct 361 CACATGGTTCACGAAAACATCAACGGGGGTTTGGCTGTAGTCACAGTGCTCTACAAAATT 420
Query 421 GGAAGGCCAGATTCTTTTCTCGGATTGCTGGAAAATAAATTGTCGGCAATTACAGATCAA 480
||||| ||||| ||||||||||||||| ||||| ||||| || |||| ||||||||||||
Sbjct 421 GGAAGACCAGACTCTTTTCTCGGATTGTTGGAACATAAAATGGCGGCGATTACAGATCAA 480
Query 481 AATGAGGCGGAGAAATATGTAG-ATGTGATTGACCCAAGGGATATTAAGATTGGGAGCAG 539
||||| || ||||| |||||| | |||| || ||||| | |||||||||| ||||||
Sbjct 481 AATGACGCCAAGAAAAATGTAGTAA-TGATAGATCCAAGTAAAATTAAGATTGAGAGCAG 539
Query 540 AAAATTTTATAGATACATTGGATCACTTACTACTCCTCCTTGTACGCAAAATGTTATTTG 599
||| | ||||||||| |||||||||||||| |||||||| |||||||||||||||| ||
Sbjct 540 AAACTATTATAGATATATTGGATCACTTACCACTCCTCCATGTACGCAAAATGTTACATG 599
Query 600 GACC 603
||||
Sbjct 600 GACC 603
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 27105393987
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5