BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G28220.1
Length=2271
Score E
Sequences producing significant alignments: (Bits) Value
Ahg900505 jgi|Araly1|900505|Al_scaffold_0004_1155 1386 0.0
Ahg900531 jgi|Araly1|900531|Al_scaffold_0004_1181 1382 0.0
> Ahg900505 jgi|Araly1|900505|Al_scaffold_0004_1155
Length=1194
Score = 1386 bits (750), Expect = 0.0
Identities = 1026/1156 (89%), Gaps = 31/1156 (3%)
Strand=Plus/Plus
Query 64 ATGATCGTTCTTTTTCTTCAAATCATTACATGTTTTCTCTTCA-CGACCACTGTCTCATC 122
||||||||||||||||||||||||||||||||||||||||||| || |||||| ||||||
Sbjct 1 ATGATCGTTCTTTTTCTTCAAATCATTACATGTTTTCTCTTCACCG-CCACTGCCTCATC 59
Query 123 ACCTCACGGCTTCACCATTGACTTGATCCAGCGTCGTTCGAATTCATCTTCTTTTCGGCT 182
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||
Sbjct 60 ACCTCACGGCTTCACCATTGACTTGATCCAGCGTCGTTCGAATTCATCTTCTTCTCGACT 119
Query 183 GTCCAAAAATCAGTTGCAAGGAGCATCACCTTACGCCGATACTTTATTTGACTACAACAT 242
||||||||||||||||| |||||||||||||||||||| ||| | ||||| |||| |||
Sbjct 120 GTCCAAAAATCAGTTGCTCGGAGCATCACCTTACGCCGACACTGTCTTTGATTACAGCAT 179
Query 243 CTATCTAATGAAACTACAAGTCGGTACTCCTCCTTTCGAGATCGCAGCGGAGATAGACAC 302
||||||||||| ||||||| |||||||||||||||||||||||| ||| |||||||||||
Sbjct 180 CTATCTAATGAGACTACAACTCGGTACTCCTCCTTTCGAGATCGTAGCAGAGATAGACAC 239
Query 303 AGGAAGTGACCTCATATGGACACAATGTATGCCTTGTCCTGACTGCTACAGC-CAATTCG 361
|||||||||||| ||||||||||||||||||||||||||| ||||||||| | |||||||
Sbjct 240 AGGAAGTGACCTTATATGGACACAATGTATGCCTTGTCCTAACTGCTACA-CACAATTCG 298
Query 362 ATCCTATATTCGACCCTTCGAAATCTTCAACCTTCAACGAACAAAGATGCCACGGGAAAT 421
|||||||||||||||||| ||||||||||||||||| ||| |||||||||| ||||| |
Sbjct 299 CTCCTATATTCGACCCTTCTAAATCTTCAACCTTCAAAGAAAAAAGATGCCATGGGAACT 358
Query 422 CTTGTCATTACGAGATTATCTACGAGGAC-AACACCTATTCCAAGGGAATCTTGGCAACC 480
|||||| ||||||||||||||||| |||| || | |||||||| ||||||||||||||||
Sbjct 359 CTTGTCCTTACGAGATTATCTACGCGGACGAA-AGCTATTCCACGGGAATCTTGGCAACC 417
Query 481 GAGACGGTCACGATCCATTCCACTTCAGGAGAGCCCTTTGTGATGGCTGAAACAACCATC 540
||||||||||| ||||| |||||||||||||||||||||||||||||||||||| ||||
Sbjct 418 GAGACGGTCACAATCCAGTCCACTTCAGGAGAGCCCTTTGTGATGGCTGAAACATCCATT 477
Query 541 GGTTGTGGGCTCCACAACACAGACCTCGATAACTC-AGGGTTTGCATCGAGTTCTTCGGG 599
|| ||||| ||| ||||| || ||||| || || | ||||| |||| |||||||||||||
Sbjct 478 GGGTGTGGCCTCAACAACTCAAACCTC-ATGACACCAGGGTATGCAGCGAGTTCTTCGGG 536
Query 600 TATTGTTGGTCTAAATATGGGACCT-CGGTCGCTTATCTCTCAGATGGACTTACCC-TAC 657
|||||||||||||| ||||||||| || ||||||||||||||||||||||| ||| | |
Sbjct 537 CATTGTTGGTCTAAACATGGGACCTTCG-TCGCTTATCTCTCAGATGGACTTGCCCAT-C 594
Query 658 CCAGGTCTTATCTCTTACTGCTTTTCTGGTCAAGGAACTAGTAAGATCAATTTTGGAACA 717
||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 595 CCAGGTCTTATATCTTACTGCTTTTCTAGTCAAGGAACTAGTAAGATCAATTTTGGAACA 654
Query 718 AATGCTATTGTGGCAGGAGATGGAACGGTAGCAGCCGATATGTTTATCAAGAAAGAT-AA 776
|||||| |||||||||||||||| ||||||||||||||||||||||||||||||||| ||
Sbjct 655 AATGCTGTTGTGGCAGGAGATGGGACGGTAGCAGCCGATATGTTTATCAAGAAAGATCAA 714
Query 777 TCCTTTCTATTATCTAAACCTAGACGCGGTCAGCGTTGAGGACAACCGCATTGAGACATT 836
||||||||||| ||||||||||||||||||||||||| |||||| ||||||||||||||
Sbjct 715 -CCTTTCTATTACCTAAACCTAGACGCGGTCAGCGTTGGGGACAAACGCATTGAGACATT 773
Query 837 GGGGACACCGTTTCATGCCGAAGACGGGAACATAGTGATAGACTCTGGAAGCACTGT-CA 895
||||||||||||||||||| ||||||||||||| | ||||||||||||| |||| | ||
Sbjct 774 GGGGACACCGTTTCATGCCCAAGACGGGAACATTTTTATAGACTCTGGAACCACT-TACA 832
Query 896 CGTACTTTCCTGTGAGCTACTGCAACCTAGTAAGAAAGGCAGTGGAA-CA-G-GTTGTGA 952
||||||| ||| |||||||||||||||||| || ||||||||| || | ||||||
Sbjct 833 CGTACTTACCTACGAGCTACTGCAACCTAGTGAGGGAGGCAGTGGCGGCAAGTGTTGTGG 892
Query 953 CAGCGGTTCGAGTACCTGACCCGAGCGGCAATGA-CATGCTTTGCTACTTTTCAGAGACC 1011
||||| || |||||||||||||||| | | || | ||||||||||| || || |||
Sbjct 893 CAGCGAATCAAGTACCTGACCCGAGCAGTGA-GAACTTGCTTTGCTACAATTGGGACACC 951
Query 1012 ATAGATATCTTTCCGGTGATCACAATGCATTTTTCTGGCGGTGCGGATCTTGTCCTGGAT 1071
|| || |||||||||||||||||| |||||||| |||||||||||||||||||| |||||
Sbjct 952 ATGGAGATCTTTCCGGTGATCACATTGCATTTTGCTGGCGGTGCGGATCTTGTCTTGGAT 1011
Query 1072 AAGTACAATATGTATATGGAATCGA-ACAGCGG-AGGA-CTTTTTTGTCTGGCTATTATA 1128
||||||||||||||| | ||| ||| | | ||| |||| | |||| |||| ||||||
Sbjct 1012 AAGTACAATATGTATGTCGAAACGATA-A-CGGGAGGAACCTTTT-GTCTAGCTATTGGG 1068
Query 1129 TGTAAT-AGTCCAACACAAGAA-GCTATCTTTGGGAACAGAGCACAAAACAATTTTTTGG 1186
||| | | ||| || | | |||||||||||||| ||||| || |||||||| ||||
Sbjct 1069 TGTGTTGA-TCCGTCA-ATGCCTGCTATCTTTGGGAATAGAGCGCATAACAATTTATTGG 1126
Query 1187 TGGGTTATGATTCTTC 1202
||||||||||||||||
Sbjct 1127 TGGGTTATGATTCTTC 1142
Score = 1334 bits (722), Expect = 0.0
Identities = 960/1073 (89%), Gaps = 23/1073 (2%)
Strand=Plus/Plus
Query 1212 GTTGCAAGGAGCATCACCTTACGCCGATACTTTATATGACTACAGCATCTATCTAATGAA 1271
||||| |||||||||||||||||||| ||| | | ||| |||||||||||||||||||
Sbjct 132 GTTGCTCGGAGCATCACCTTACGCCGACACTGTCTTTGATTACAGCATCTATCTAATGAG 191
Query 1272 ACTACAAGTCGGTACTCCTCCTTTCGAGATCGTAGCGGAGATAGACACGGGAAGTGACAT 1331
||||||| |||||||||||||||||||||||||||| ||||||||||| ||||||||| |
Sbjct 192 ACTACAACTCGGTACTCCTCCTTTCGAGATCGTAGCAGAGATAGACACAGGAAGTGACCT 251
Query 1332 CATATGGACACAATGTATGCCTTGTCCTAACTGCTACAGC-CAATTCGCTCCTATATTCG 1390
||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||
Sbjct 252 TATATGGACACAATGTATGCCTTGTCCTAACTGCTACA-CACAATTCGCTCCTATATTCG 310
Query 1391 ACCCTTCGAAATCTTCAACCTTCAGAGAACAAAGATGCAATGGAAACTCTTGTCATTACG 1450
||||||| |||||||||||||||| |||| |||||||| |||| |||||||||| |||||
Sbjct 311 ACCCTTCTAAATCTTCAACCTTCAAAGAAAAAAGATGCCATGGGAACTCTTGTCCTTACG 370
Query 1451 AGATTATCTACGCGGACAAAACCTATTCCAAGGGAATCTTGGCAACCGAGACGGTCACGA 1510
||||||||||||||||| ||| |||||||| ||||||||||||||||||||||||||| |
Sbjct 371 AGATTATCTACGCGGACGAAAGCTATTCCACGGGAATCTTGGCAACCGAGACGGTCACAA 430
Query 1511 TACCT-TCCACTTCAGGAGAGCCCTTTGTGATGGCTGAAACAAAAATTGGTTGTGGCCTC 1569
| || |||||||||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct 431 T-CCAGTCCACTTCAGGAGAGCCCTTTGTGATGGCTGAAACATCCATTGGGTGTGGCCTC 489
Query 1570 GACAACACAAACCTCCA-GTACTC-AGGGTTTGCATCGAGTTCTTCCGGCATTGTTGGTC 1627
||||| |||||||| | | || | ||||| |||| |||||||||| |||||||||||||
Sbjct 490 AACAACTCAAACCTC-ATG-ACACCAGGGTATGCAGCGAGTTCTTCGGGCATTGTTGGTC 547
Query 1628 TAAATATGGGACCTTTGTCGCTTATATCTCAGATGGACTTACCC-TACCCAGGTCTTATC 1686
|||| |||||||||| ||||||||| |||||||||||||| ||| | ||||||||||||
Sbjct 548 TAAACATGGGACCTTCGTCGCTTATCTCTCAGATGGACTTGCCCAT-CCCAGGTCTTATA 606
Query 1687 TCTTACTGCTTTTCTGGTCAAGGAACTAGTAAGATCAATTTTGGAACAAATGCCATTGTG 1746
||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||
Sbjct 607 TCTTACTGCTTTTCTAGTCAAGGAACTAGTAAGATCAATTTTGGAACAAATGCTGTTGTG 666
Query 1747 GCAGGAGATGGAACGGTAGCAGCCGATATGTTTATCAAGAAAGAT-AATCCTTTCTATTA 1805
||||||||||| ||||||||||||||||||||||||||||||||| || |||||||||||
Sbjct 667 GCAGGAGATGGGACGGTAGCAGCCGATATGTTTATCAAGAAAGATCAA-CCTTTCTATTA 725
Query 1806 TCTAAACCTAGACGCGGTCAGCGTTGAGGACAACCTG-ATTGCGACATTGGGGACACCGT 1864
||||||||||||||||||||||||| |||||| | | |||| |||||||||||||||||
Sbjct 726 CCTAAACCTAGACGCGGTCAGCGTTGGGGACAAAC-GCATTGAGACATTGGGGACACCGT 784
Query 1865 TTCATGCCGAAGACGGGAACATTTTTATAGACTCAGGAACCACTCT-CACGTACTTTCCA 1923
|||||||| ||||||||||||||||||||||||| ||||||||| | ||||||||| ||
Sbjct 785 TTCATGCCCAAGACGGGAACATTTTTATAGACTCTGGAACCACT-TACACGTACTTACCT 843
Query 1924 ATGAGCTACTGCAACCTAGTGAGGGAGGCAGTGGAA-CA-G-GTTGTGACAGC-AGTTAA 1979
| |||||||||||||||||||||||||||||||| || | |||||| |||| | | ||
Sbjct 844 ACGAGCTACTGCAACCTAGTGAGGGAGGCAGTGGCGGCAAGTGTTGTGGCAGCGAATCAA 903
Query 1980 AGTACCTGACATGGGCAGTGACAACTTGCTTTGCTACTACTCGGACACCATAGATATCTT 2039
||||||||| | ||||||| ||||||||||||||| | | ||||||||| || |||||
Sbjct 904 -GTACCTGACCCGAGCAGTGAGAACTTGCTTTGCTACAATTGGGACACCATGGAGATCTT 962
Query 2040 TCCCGTGATCACAATGCATTTTTCTGGCGGTGCGGATCTTGTCTTGGATAAGTATAATAT 2099
||| ||||||||| |||||||| ||||||||||||||||||||||||||||||| |||||
Sbjct 963 TCCGGTGATCACATTGCATTTTGCTGGCGGTGCGGATCTTGTCTTGGATAAGTACAATAT 1022
Query 2100 GTATCTCGAAACGATTACCGGAGGAATCTTTTGTTTGGCTATTGGGTGTAATGATCCGTC 2159
|||| |||||||||| || ||||||| ||||||| | |||||||||||| |||||||||
Sbjct 1023 GTATGTCGAAACGATAACGGGAGGAACCTTTTGTCTAGCTATTGGGTGTGTTGATCCGTC 1082
Query 2160 AATGCCTGCTGTCTTTGGGAACAGAGCGCAGAACAATTTTTTGGTGGGTTATGATCCTTC 2219
|||||||||| |||||||||| |||||||| |||||||| ||||||||||||||| ||||
Sbjct 1083 AATGCCTGCTATCTTTGGGAATAGAGCGCATAACAATTTATTGGTGGGTTATGATTCTTC 1142
Query 2220 TTCAA-ATGTGATTTCTTTCAGTCCCACTAATTGTTCTGCTTTGTGGAGTTGA 2271
|| | ||||||||||| |||||||||||||||||||| | |||||||||
Sbjct 1143 AACATTA-GTGATTTCTTTTAGTCCCACTAATTGTTCTGCACTATGGAGTTGA 1194
> Ahg900531 jgi|Araly1|900531|Al_scaffold_0004_1181
Length=2136
Score = 1382 bits (748), Expect = 0.0
Identities = 1278/1523 (84%), Gaps = 80/1523 (5%)
Strand=Plus/Plus
Query 783 CTATTATCTAAACCTAGACGCGGTCAGCGTTGAGGACAACCGCATTGAGACATTGGGGAC 842
|||||| ||||||||||| ||||||||||||| ||||| ||||||||||||| |||| ||
Sbjct 660 CTATTACCTAAACCTAGATGCGGTCAGCGTTGGGGACACCCGCATTGAGACAGTGGGAAC 719
Query 843 ACCGTTTCATGCC-GAAGACGGGAACATAGTGATAGACTCTGGAAGCACTGTCACGTACT 901
||| ||||||||| || | ||||||||||||||||||||||||| | || |||||||||
Sbjct 720 ACCCTTTCATGCCTTAA-ATGGGAACATAGTGATAGACTCTGGAACCCCTCTCACGTACT 778
Query 902 TTCCTGTGAGCTACTGCAACCTAGTAAGAAAGGCAGTGGAACAG-GTTGTGACAGCGGTT 960
|||||||||||||||||||||||||||||||||||||||||| | ||||||||||||| |
Sbjct 779 TTCCTGTGAGCTACTGCAACCTAGTAAGAAAGGCAGTGGAAC-GTGTTGTGACAGCGGAT 837
Query 961 CGAGTACCTGACCCGAGCGGCAATGACATGCTTTGCTACTTTTCAGAGACCATAGATATC 1020
|||||| ||||||||||| ||||||||||||||||||||| |||| | |||||||| |||
Sbjct 838 CGAGTAGCTGACCCGAGCCGCAATGACATGCTTTGCTACTATTCAAACACCATAGAGATC 897
Query 1021 TTTCCGGTGATCACAATGCATTTTTCTGGCGGTGCGGATCTTGTCCTGGATAAGTACAAT 1080
||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 898 TTTCCGGTGATCACAGTGCATTTTTCTGGCGGTGCGGATCTTGTCTTGGATAAGTACAAT 957
Query 1081 ATGTATATGGAATCGAACAGCGGAGGACTTTTTTGTCTGGCTATTATATGTAATAGTCCA 1140
|||||| |||||| ||| || |||||| |||| |||||||||||||||||||||| ||||
Sbjct 958 ATGTATTTGGAATTGAATAGAGGAGGAGTTTTCTGTCTGGCTATTATATGTAATAATCCA 1017
Query 1141 ACACAAGAAGCTATCTTTGGGAACAGAGCACAAAACAATTTTTTGGTGGGTTATGATTCT 1200
||||||| |||||||||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct 1018 ACACAAGTAGCTATCTTTGGGAACAGAGCACAGAACAATTTCTTGGTGGGTTATGATTCT 1077
Query 1201 TCTTCACTGCTGTTGCAAGGAGCATCACCTTACGCCGATACTTTATATGACTA-CAGCA- 1258
|||||||||||| | ||| |||||||||| || ||||| | | ||| || | ||
Sbjct 1078 TCTTCACTGCTGCAACTCGGATCATCACCTTATGCGGATACCGTCTTTGA-TAACT-CAA 1135
Query 1259 TCTATCTAATGAAACTACAAGTCGGTACTCCTCCTTTCGAGATCGTAGCGGAGATAGACA 1318
| ||||||||||||||||||||||||||||||||||||||||||| ||| | |||||||
Sbjct 1136 TGTATCTAATGAAACTACAAGTCGGTACTCCTCCTTTCGAGATCGAAGCTGTCATAGACA 1195
Query 1319 CGGGAAGTGACATCATATGGACACAATGTATGCCTTGTCCTAACTGCTACAGCCAATTCG 1378
| |||||||| |||| ||||||||||||| |||||||| | ||||||||| ||| ||
Sbjct 1196 CCGGAAGTGAGATCACATGGACACAATGTTTGCCTTGTGTTCACTGCTACAAACAAAACG 1255
Query 1379 CTCCTATATTCGACCCTTCGAAATCTTCAACCTTCA-G-AGAACAAAGATGCAATGGAA- 1435
|||| |||||||||||||||||||| || ||||||| | |||| || ||||| ||| |
Sbjct 1256 CTCCCATATTCGACCCTTCGAAATCCTCGACCTTCAAGGAGAA-AA-GATGCCATG-ACC 1312
Query 1436 ACTCTTGTCATTACGAGATT-ATCTACG-CGGACAAAACCTATTCCAAGGGAATCTTGGC 1493
||||||||| ||||||| || || ||| || |||||||||| ||||||||| ||| ||
Sbjct 1313 ACTCTTGTCCTTACGAGGTTGAT-TACTTCG-ACAAAACCTACACCAAGGGAACCTTAGC 1370
Query 1494 AACCGAGACGGTCACGATACC-TTCCACTTCAGGAGAGCCCTTTGTGATGGCTGAAACAA 1552
||||| || ||||| || || |||||||||||| || |||||||||||||||||||| |
Sbjct 1371 GACCGACACAGTCACAAT-CCATTCCACTTCAGGGGAACCCTTTGTGATGGCTGAAACTA 1429
Query 1553 AAATTGGTTGTGGCCTCGACAACACAAACCTCCAGTACTCAGGGTTT-GCATCGAGTTCT 1611
||||||||||||| | ||||| | | || | | || ||| | | | |||| |
Sbjct 1430 TTATTGGTTGTGGCC--G-CAACA-A--C-TC-A-T-----GG-TTTAG-ACCTAGTT-T 1472
Query 1612 TCCGG-CATTGTTGGTCTAAATATGGG-ACCTTTGTCGCTTAT-ATCTCAGATGGACT-T 1667
| || | |||||||||||||| |||| |||||| ||||| || | ||||||||| | |
Sbjct 1473 TGAGGGCTTTGTTGGTCTAAAT-TGGGGACCTTTATCGCTCATCA-CTCAGATGGGCGGT 1530
Query 1668 -ACCCTACCCAGGTCTT-ATCTCTTACTGCTTTT-CTGGTCAA-GGAACTAGTAAGATCA 1723
| ||||||||| || || |||||||| |||| ||||| || ||||||||||||||||
Sbjct 1531 GAG--TACCCAGGT-TTGATGTCTTACTG-TTTTGCTGGT-AACGGAACTAGTAAGATCA 1585
Query 1724 ATTTTGGAACAAATGCCATTGT-GGCAGGAGATGGAACGGTAGCAGCCGA-TATGTTTAT 1781
||||||||||||| || ||||| || ||||| ||| ||| || || | ||||||| |
Sbjct 1586 ATTTTGGAACAAACGCTATTGTCGG-AGGAGGTGGGGTTGTATCAACC-ACTATGTTTGT 1643
Query 1782 CAAGAAAGATAATCC---TTTCTATTATCTAAACCTAGACGCGGTCAGCGTTGAGGACAA 1838
|| || | || || ||||||||| ||||||||||||||||||||||||| |||||
Sbjct 1644 CACGACGGCGAAACCAGGTTTCTATTACCTAAACCTAGACGCGGTCAGCGTTGGGGACAC 1703
Query 1839 CCTG-ATTGCGACATTGGGGACACCGTTTCATGCCG-AAGACGGGAACATTTTTATAGAC 1896
|| | |||| |||| |||||||||||||||||||| || | |||||||| | ||||||
Sbjct 1704 CC-GCATTGAGACACTGGGGACACCGTTTCATGCCTTAAAA-GGGAACATAGTGATAGAC 1761
Query 1897 TCAGGAACCACTCTCACGTACTTTCCA-ATGAGCTACTGCAACCTAGTGAGGGAGGCAGT 1955
|| ||||||||||||||||||||||| | ||||||||||||||||||||| ||||||||
Sbjct 1762 TCTGGAACCACTCTCACGTACTTTCCTGA-GAGCTACTGCAACCTAGTGAGAGAGGCAGT 1820
Query 1956 GGAACAGGTTGTGACAGCAGTTAAAGTACCTGACATG---GGCAGTGACAACTTGCTTTG 2012
|||||| ||||||||||| ||| || | | ||| | |||| |||| || ||||||
Sbjct 1821 GGAACATGTTGTGACAGCGGTTCCAGCAGCAGACCCGACCGGCAATGAC--CT-GCTTTG 1877
Query 2013 CTACTACTCGGACACCATAGATATCTTTCCCGTGATCACAATGCATTTTTCTGGCGGTGC 2072
|||||| || |||||| || |||||||| |||||||||||||||||||||||||||||
Sbjct 1878 CTACTATTCAAACACCACCGAGATCTTTCCGGTGATCACAATGCATTTTTCTGGCGGTGC 1937
Query 2073 GGATCTTGTCTTGGATAAGTATAATATGTATCTCGAAACGAT-TACCGGAGGAATCTTTT 2131
||||||||||||||||||||| ||||||| | | ||| | || || ||||||| | ||||
Sbjct 1938 GGATCTTGTCTTGGATAAGTACAATATGTTTATGGAATC-ATATAGCGGAGGACTTTTTT 1996
Query 2132 GTTTGGCTATTGGGTGTAATGATCCGTCA-ATGCCTGCTGTCTTTGGGAACAGAGCGCAG 2190
|| |||||||| |||||| | || || | | ||| |||||||||||||||| |||
Sbjct 1997 GTCTGGCTATTATATGTAATAACCCAACACAAGAA-GCTATCTTTGGGAACAGAGCACAG 2055
Query 2191 AACAATTTTTTGGTGGGTTATGATCCTTCTTCAAATG-TGATTTCTTTCA-GTCCCACTA 2248
|||||||| |||||||||||||||||||||||| || || ||||||||| | ||||| |
Sbjct 2056 AACAATTTCTTGGTGGGTTATGATCCTTCTTCAC-TGCTGGTTTCTTTCAAG-CCCACCA 2113
Query 2249 ATTGTTCTGCTTTGTGGAGTTGA 2271
|||||||||| ||||||| ||||
Sbjct 2114 ATTGTTCTGCATTGTGGAATTGA 2136
Score = 937 bits (507), Expect = 0.0
Identities = 865/1031 (84%), Gaps = 52/1031 (5%)
Strand=Plus/Plus
Query 202 GGAGCATCACCTTACGCCGATACTTTATTTGACT-ACAAC-ATCTATCTAATGAAACTAC 259
||| |||||||||| || ||||| | ||||| | || | || ||||||||||||||||
Sbjct 1096 GGATCATCACCTTATGCGGATACCGTCTTTGA-TAAC-TCAATGTATCTAATGAAACTAC 1153
Query 260 AAGTCGGTACTCCTCCTTTCGAGATCGCAGCGGAGATAGACACAGGAAGTGACCTCATAT 319
||||||||||||||||||||||||||| ||| | |||||||| |||||||| ||| ||
Sbjct 1154 AAGTCGGTACTCCTCCTTTCGAGATCGAAGCTGTCATAGACACCGGAAGTGAGATCACAT 1213
Query 320 GGACACAATGTATGCCTTGTCCTGACTGCTACAGCCAATTCGATCCTATATTCGACCCTT 379
||||||||||| |||||||| | ||||||||| ||| || ||| |||||||||||||
Sbjct 1214 GGACACAATGTTTGCCTTGTGTTCACTGCTACAAACAAAACGCTCCCATATTCGACCCTT 1273
Query 380 CGAAATCTTCAACCTTCAACGA-ACAAAGATGCCACGGGAAATCTTGTCATTACGAGATT 438
||||||| || |||||||| || | |||||||||| | | ||||||| ||||||| ||
Sbjct 1274 CGAAATCCTCGACCTTCAAGGAGA-AAAGATGCCATGACCACTCTTGTCCTTACGAGGTT 1332
Query 439 -ATCTACGAGGACAACACCTATTCCAAGGGAATCTTGGCAACCGAGACGGTCACGATCCA 497
|| ||| ||||| ||||| ||||||||| ||| || ||||| || ||||| |||||
Sbjct 1333 GAT-TACTTCGACAAAACCTACACCAAGGGAACCTTAGCGACCGACACAGTCACAATCCA 1391
Query 498 TTCCACTTCAGGAGAGCCCTTTGTGATGGCTGAAACAACCATCGGTTGTGGGCTCCACAA 557
|||||||||||| || |||||||||||||||||||| | || |||||| || || | |
Sbjct 1392 TTCCACTTCAGGGGAACCCTTTGTGATGGCTGAAACTATTATTGGTTGT-GG--CCGC-A 1447
Query 558 CACAGACCTCGATAACTCAGGGTTT-GCATCGAGTTCTT-CGGG-TATTGTTGGTCTAAA 614
||| | ||| | | ||||| | | | |||| || ||| | |||||||||||||
Sbjct 1448 -ACA-A-CTC----A-T---GGTTTAG-ACCTAGTT-TTGAGGGCT-TTGTTGGTCTAAA 1493
Query 615 TAT-GGGACCTCGGTCGCTTATCTCTCAGATGGAC--TTACCCTACCCAGGTCTT-ATCT 670
| | ||||||| ||||| ||| ||||||||| | | | ||||||||| || || |
Sbjct 1494 T-TGGGGACCTTTATCGCTCATCACTCAGATGGGCGGTGA--GTACCCAGGT-TTGATGT 1549
Query 671 CTTACTGCTTTT-CTGGTCAA-GGAACTAGTAAGATCAATTTTGGAACAAATGCTATTGT 728
||||||| |||| ||||| || ||||||||||||||||||||||||||||| ||||||||
Sbjct 1550 CTTACTG-TTTTGCTGGT-AACGGAACTAGTAAGATCAATTTTGGAACAAACGCTATTGT 1607
Query 729 -GGCAGGAGATGGAACGGTAGCAGCCGA-TATGTTTATCAAGAAAGATAATCC---TTTC 783
|| ||||| ||| ||| || || | ||||||| ||| || | || || ||||
Sbjct 1608 CGG-AGGAGGTGGGGTTGTATCAACC-ACTATGTTTGTCACGACGGCGAAACCAGGTTTC 1665
Query 784 TATTATCTAAACCTAGACGCGGTCAGCGTTGAGGACAACCGCATTGAGACATTGGGGACA 843
||||| ||||||||||||||||||||||||| ||||| ||||||||||||| ||||||||
Sbjct 1666 TATTACCTAAACCTAGACGCGGTCAGCGTTGGGGACACCCGCATTGAGACACTGGGGACA 1725
Query 844 CCGTTTCATGCC-GAAGACGGGAACATAGTGATAGACTCTGGAAGCACTGTCACGTACTT 902
|||||||||||| || | ||||||||||||||||||||||||| |||| ||||||||||
Sbjct 1726 CCGTTTCATGCCTTAA-AAGGGAACATAGTGATAGACTCTGGAACCACTCTCACGTACTT 1784
Query 903 TCCTGTGAGCTACTGCAACCTAGTAAGAAAGGCAGTGGAACAGGTTGTGACAGCGGTTCG 962
||||| |||||||||||||||||| ||| ||||||||||||| ||||||||||||||||
Sbjct 1785 TCCTGAGAGCTACTGCAACCTAGTGAGAGAGGCAGTGGAACATGTTGTGACAGCGGTTCC 1844
Query 963 AGTACCTGACCCGAGCGGCAATGACATGCTTTGCTACTTTTCAGAGACCATAGATATCTT 1022
|| | | ||||||| |||||||||| |||||||||||| |||| | |||| || |||||
Sbjct 1845 AGCAGCAGACCCGACCGGCAATGACCTGCTTTGCTACTATTCAAACACCACCGAGATCTT 1904
Query 1023 TCCGGTGATCACAATGCATTTTTCTGGCGGTGCGGATCTTGTCCTGGATAAGTACAATAT 1082
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1905 TCCGGTGATCACAATGCATTTTTCTGGCGGTGCGGATCTTGTCTTGGATAAGTACAATAT 1964
Query 1083 GTATATGGAATCGA-ACAGCGGAGGACTTTTTTGTCTGGCTATTATATGTAATAGTCCAA 1141
|| ||||||||| | | ||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1965 GTTTATGGAATC-ATATAGCGGAGGACTTTTTTGTCTGGCTATTATATGTAATAACCCAA 2023
Query 1142 CACAAGAAGCTATCTTTGGGAACAGAGCACAAAACAATTTTTTGGTGGGTTATGATTCTT 1201
||||||||||||||||||||||||||||||| |||||||| ||||||||||||||| |||
Sbjct 2024 CACAAGAAGCTATCTTTGGGAACAGAGCACAGAACAATTTCTTGGTGGGTTATGATCCTT 2083
Query 1202 CTTCACTGCTG 1212
|||||||||||
Sbjct 2084 CTTCACTGCTG 2094
Score = 379 bits (205), Expect = 4e-104
Identities = 359/432 (83%), Gaps = 16/432 (4%)
Strand=Plus/Plus
Query 1800 CTATTATCTAAACCTAGACGCGGTCAGCGTTGAGGACAACCTG-ATTGCGACATTGGGGA 1858
|||||| ||||||||||| ||||||||||||| |||| ||| | |||| |||| |||| |
Sbjct 660 CTATTACCTAAACCTAGATGCGGTCAGCGTTGGGGAC-ACCCGCATTGAGACAGTGGGAA 718
Query 1859 CACCGTTTCATGCC-GAAGACGGGAACATTTTTATAGACTCAGGAACCACTCTCACGTAC 1917
|||| ||||||||| || | |||||||| | |||||||| |||||| |||||||||||
Sbjct 719 CACCCTTTCATGCCTTAA-ATGGGAACATAGTGATAGACTCTGGAACCCCTCTCACGTAC 777
Query 1918 TTTCCAATGAGCTACTGCAACCTAGTGAGGGAGGCAGTGGAACAG-GTTGTGACAGCAGT 1976
||||| ||||||||||||||||||| || |||||||||||| | ||||||||||| |
Sbjct 778 TTTCCTGTGAGCTACTGCAACCTAGTAAGAAAGGCAGTGGAAC-GTGTTGTGACAGCGGA 836
Query 1977 TAAAGTACCTGACATG-G--GCAGTGACAACTTGCTTTGCTACTACTCGGACACCATAGA 2033
| |||| ||||| | | ||| |||| | ||||||||||||| || ||||||||||
Sbjct 837 TCGAGTAGCTGACCCGAGCCGCAATGAC-A--TGCTTTGCTACTATTCAAACACCATAGA 893
Query 2034 TATCTTTCCCGTGATCACAATGCATTTTTCTGGCGGTGCGGATCTTGTCTTGGATAAGTA 2093
|||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 894 GATCTTTCCGGTGATCACAGTGCATTTTTCTGGCGGTGCGGATCTTGTCTTGGATAAGTA 953
Query 2094 TAATATGTATCTCGAAACGATTACCGGAGGAATCTTT-TGTTTGGCTATTGGGTGTAATG 2152
||||||||| | ||| || || |||||| | ||| ||| |||||||| ||||||
Sbjct 954 CAATATGTATTTGGAATTGAATAGAGGAGGAGT-TTTCTGTCTGGCTATTATATGTAATA 1012
Query 2153 ATCCGTCA-ATGCCTGCTGTCTTTGGGAACAGAGCGCAGAACAATTTTTTGGTGGGTTAT 2211
|||| || | | ||| |||||||||||||||| ||||||||||| ||||||||||||
Sbjct 1013 ATCCAACACAAGTA-GCTATCTTTGGGAACAGAGCACAGAACAATTTCTTGGTGGGTTAT 1071
Query 2212 GATCCTTCTTCA 2223
||| ||||||||
Sbjct 1072 GATTCTTCTTCA 1083
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 85512600025
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5