BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G28230.1
Length=875
Score E
Sequences producing significant alignments: (Bits) Value
Ahg481687 jgi|Araly1|481687|fgenesh2_kg.4__747__AT2G28230.1 1168 0.0
Ahg894891 jgi|Araly1|894891|Al_scaffold_0006_2887 252 4e-66
> Ahg481687 jgi|Araly1|481687|fgenesh2_kg.4__747__AT2G28230.1
Length=831
Score = 1168 bits (632), Expect = 0.0
Identities = 737/786 (94%), Gaps = 13/786 (2%)
Strand=Plus/Plus
Query 18 GTCATTCTCCCTCAACAACAATGCCCGTCAAGTGGGTTTTACATTGGCAACCAAACCAAG 77
||| ||||||||||||||||||||| || || ||||||||||||||||||||||||||||
Sbjct 1 GTCTTTCTCCCTCAACAACAATGCCAGTGAAATGGGTTTTACATTGGCAACCAAACCAAG 60
Query 78 GATCAACAGTAAGCAGCCAAATCCTAAACGAAGCAACACAATGTGTAGAGAGCATCAATG 137
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 61 GATCAACAGTAAGCAGCCAAATCCTAAACGAAGTAACACAATGTGTAGAGAGCATCAATG 120
Query 138 GTGTGAAAGAAGGAAGATGGAAAGCAACACTCAACTATTACAAACCCATGTTAAAAGACC 197
|||| |||||||||||||||||||| || |||||||||||||||||||||||| |||||
Sbjct 121 GTGTCAAAGAAGGAAGATGGAAAGCTACTCTCAACTATTACAAACCCATGTTACGAGACC 180
Query 198 AAGCGAATCAATTGGAGTTTCCTCGTGATTTTCTAGGGATTTCACTTGCGGATCAGCCGA 257
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 AAGCGAATCAATCAGAGTTTCCTCGTGATTTTCTAGGGATTTCACTTGCGGATCAGCCGA 240
Query 258 ATAAGTACTATTTCATTATCAGGACGCAGAGGATTGTCTTGGAAGCTGATTCTTCGATTC 317
||||||||||||||||||||||| | ||||||||||| ||||||||||||||||||||||
Sbjct 241 ATAAGTACTATTTCATTATCAGGTCACAGAGGATTGTGTTGGAAGCTGATTCTTCGATTC 300
Query 318 AGTTGATTATGGAGAAGCTTCAGTCTTATAAATCTAAAGTGGCTCTTTACTTTGATGGGT 377
| |||||||||||||||||||||||||||||||| ||||| || ||||||||||||||||
Sbjct 301 AATTGATTATGGAGAAGCTTCAGTCTTATAAATCGAAAGTTGCGCTTTACTTTGATGGGT 360
Query 378 TTCAGTATCAGCTTGGTGATTTTAGGTTGAGAGTTGGTAAAGTTGTTCCTACTCATTCTG 437
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 TTCAGTATCAGCTTGGTGATTTTAGGTTGAGAGTTGGTAAAGTTGTTCCTACTCATTCTG 420
Query 438 AGAATGTTAGAGGCATTGTCATGGAGGTGGAGTATCTTCCTATATCATCAATGGAAAAGG 497
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 AGAATGTTAGAGGAATTGTCATGGAGGTGGAGTATCTTCCTATATCATCAATGGAAAAGG 480
Query 498 CACAAAAGGTGATGGAGGAGTTCTTGGAGATATGGAATGAAGCTCTGGCTAAAAGGTCGT 557
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 CACAAAAAGTGATGGAGGAGTTCTTGGAGATATGGAATGAAGCTCTGGCTAAAAGGTCGT 540
Query 558 TGCCGGGTAAGTTTGTGAACATAGATCTCAACTTTGGGGAGTTTGGACTTGGAGACATCT 617
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 541 TGCCGGGTAAGTTTGTGAACATAGATCTCAACTTTGGGGAGTTTGGACTTGGAGACAACT 600
Query 618 ACACTCCACAACACACAGCTGTTCGTTACGCTCTCGTGATGGCTCACATGATTGCTACCG 677
|||||||||||||||| |||||||| || |||||||||||||||||||||||||||||||
Sbjct 601 ACACTCCACAACACACCGCTGTTCGATATGCTCTCGTGATGGCTCACATGATTGCTACCG 660
Query 678 TTCAAGCTGTGAGAGGCTAA-ACCAAAACAT-AACTTAGTATTTCTAGGTAAAATTATGT 735
|||||||||||||||||||| || | | || | |||||||||||||||||| |||
Sbjct 661 TTCAAGCTGTGAGAGGCTAATACTTGTTC-TGAAATC-GTATTTCTAGGTAAAATTCTGT 718
Query 736 GCTT-TGCAATATTAGTGATTTCTTTCTTTGGTCATGTTTATCTATAAGAAGCATTGAGA 794
| || ||||||||| ||||||||||| ||||||||||||||||| | | | | ||||
Sbjct 719 G-TTCTGCAATATTTGTGATTTCTTT----GGTCATGTTTATCTATATGCA-C-T-GAGA 770
Query 795 AAAAAT 800
||||||
Sbjct 771 AAAAAT 776
> Ahg894891 jgi|Araly1|894891|Al_scaffold_0006_2887
Length=321
Score = 252 bits (136), Expect = 4e-66
Identities = 255/312 (82%), Gaps = 10/312 (3%)
Strand=Plus/Plus
Query 193 AGACCAAGCGAATCAATTGGAGTTTCCTCGTGATTTTCTAGGGATTTCACTTGCGGATCA 252
|||||| || |||||| |||||| || ||||| ||||||||| |||| ||| | | |
Sbjct 9 AGACCAGGCAAATCAAGCGGAGTTCCCGCGTGAATTTCTAGGGGTTTCGCTTCCAAAGGA 68
Query 253 GCCGAA-TAAGTACTATTTCATTATCAGGA-CGCAGAGGATTGTCTTGGAAGCTGATTCT 310
| | || ||||||||| ||| | ||| || |||||||||| ||| | || || |||||
Sbjct 69 GTC-AAGTAAGTACTACTTCGTCGTCA-GATCGCAGAGGATCGTCGTAGATGCAGATTCG 126
Query 311 TCGATTCAGTTGATTATGGAGAAGCTTCAGTCTTATAAATCTAAAGTGGCTC--TTTACT 368
|||||||| |||| |||||||| ||| ||||||| |||| ||| ||| ||||||
Sbjct 127 TCGATTCAAATGATCATGGAGAACCTTGAGTCTTACAAAT-GCAAG-CTCTCGTTTTACT 184
Query 369 TTGATGGGTTTCAGTATCAGCTTGGTGATTTT-AGGTTGAGAGTTGGTAAAGTTGTTCCT 427
|||| |||||||||||||| |||||||||||| | | |||||||||||||||||||||||
Sbjct 185 TTGAAGGGTTTCAGTATCAACTTGGTGATTTTCAAG-TGAGAGTTGGTAAAGTTGTTCCT 243
Query 428 ACTCATTCTGAGAATGTTAGAGGCATTGTCATGGAGGTGGAGTATCTTCCTATATCATCA 487
||||| | |||| || |||||||| |||||||||||||||||||||||||||||||||
Sbjct 244 GCTCATGCCGAGACCGTCAGAGGCATAGTCATGGAGGTGGAGTATCTTCCTATATCATCA 303
Query 488 ATGGAAAAGGCA 499
|| |||| ||||
Sbjct 304 ATAGAAATGGCA 315
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32404479450
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5