BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G28250.1
Length=2066
Score E
Sequences producing significant alignments: (Bits) Value
Ahg481685 jgi|Araly1|481685|fgenesh2_kg.4__745__AT2G28250.2 2896 0.0
> Ahg481685 jgi|Araly1|481685|fgenesh2_kg.4__745__AT2G28250.2
Length=1953
Score = 2896 bits (1568), Expect = 0.0
Identities = 1824/1945 (94%), Gaps = 27/1945 (1%)
Strand=Plus/Plus
Query 94 GGTTTTAGATTCTTGCACTCTTGGAGGTTGAGCTTAGTTCGACATGAAGGTCTTTATCTA 153
||||||||||| |||||| ||||||||||||| |||||| ||||||||||||||| ||||
Sbjct 29 GGTTTTAGATTGTTGCACACTTGGAGGTTGAGATTAGTTTGACATGAAGGTCTTTTTCTA 88
Query 154 ATCTCCA-CTCGCTGGCAATGAAGATGAGAGTGGAAACCGCACTTGCGATCCTTTTGGTT 212
||||||| | | || ||| |||||||||||||||||||||||||| || ||||||
Sbjct 89 ATCTCCAGCAAAC-ATAAACGAAAATGAGAGTGGAAACCGCACTTGCGATTCTCTTGGTT 147
Query 213 CTCATATCAATTCAACAATGTTATGGAGGTGTAAGCAACTATACATGTACGTGTTTCTCT 272
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 148 CTCATATCAATTCAACAATGTTATGGAGGTGTAAGCAACTATACGTGTACGTGTTTCTCT 207
Query 273 TCGGGCAATCGAAGTGATATCCTGGAATCTAACTGTTCCACATCATGTAATTGCAGA-C- 330
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
Sbjct 208 TCGGGCAATCGAAGTGATATCCTGGAATCTAACTGTTCGACATCATGTAATTGCAGACCA 267
Query 331 -CAGACAGAGATCAATGGGTATGTTTGTGTCCTGCAAATGGATTTCCGGTTATAGCCATT 389
|||| ||||| ||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct 268 GCAGAAAGAGACCAATGGGTATGTTTGTGTCCTGCAAATGGATTTCCAGTAATAGCCATT 327
Query 390 GGTGGTTCAAATTCGTCATGCTTCACTTCATGCAACTGCTCTGCTGGTGCTACAAAATCT 449
|| ||||| ||||| |||||||||||||| ||||||||||||||||| ||| ||||||||
Sbjct 328 GGCGGTTCCAATTCTTCATGCTTCACTTCCTGCAACTGCTCTGCTGGAGCTTCAAAATCT 387
Query 450 TCAAAGAAGCAATATTTATCGAGGAAACTCGTTATAGTTATACTACTCTTCTGCGGTGTA 509
||||||| |||||||||||||||||||||||||||||||||| | |||||||| ||||||
Sbjct 388 TCAAAGAGGCAATATTTATCGAGGAAACTCGTTATAGTTATAGTCCTCTTCTGTGGTGTA 447
Query 510 CTCATTTCACTAGCATTCCTTGCCTCTATGATTTGTTACATTTGTAGAAAGGACAAGTTT 569
|||| |||||||||||||||||||||||||||||| ||||||||||||||| |||| |||
Sbjct 448 CTCACTTCACTAGCATTCCTTGCCTCTATGATTTGCTACATTTGTAGAAAGAACAAATTT 507
Query 570 TCTGGACAAACCCCTTCAGTCTCTTCAGATAGAGAATCTAGCTGGCATAGCTCTGCTAAC 629
|||||| ||| ||||||||| ||||||||||||||||| || |||||||||||||| |||
Sbjct 508 TCTGGAGAAAGCCCTTCAGTTTCTTCAGATAGAGAATCAAGTTGGCATAGCTCTGCCAAC 567
Query 630 TTAATAAACCGTAAAAGCTCGGTTTCACAATCGAAAATTAGCATCAGCTCCTCAGTGGCA 689
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 568 TTAATAAACCGTAAAAGCTCGGTTTCACAATCGAAAATTAGCATCAGCTCCTCAGTGTCA 627
Query 690 GGTTGCTTCTTTCAGAATGCTTCTTTGTTTTGTGTGAGCAAACCTGAAACAATCCATGGA 749
||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||
Sbjct 628 GGTTGCTTCTTTCAGAATGTTTCTTTGTTTTGTGTGAGCAGACCTGAAACAATCCATGGA 687
Query 750 GCTATCT-TTCAGTTCTCATACACAGAATTAGAGCAAGCAACCAATAAATTCTCAAGTAA 808
| || | ||||||||||||| |||||||||||||||||||||||||||||||| |||||
Sbjct 688 TCGAT-TGTTCAGTTCTCATATACAGAATTAGAGCAAGCAACCAATAAATTCTCCAGTAA 746
Query 809 CAGTGTAATAGGACATGGAGGAAGTAGTTGTGTTTACCGTGGACAGCTCAAAGACGGTAA 868
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 747 CAGTGTAATAGGACATGGAGGAAGTAGCTGTGTTTACCGTGGACAGCTCAAAGACGGTAA 806
Query 869 AACCGCTGCGATCAAACGTCTAAATACCCCTAAAGGAGACGACACTGACACTCTATTCTC 928
||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||
Sbjct 807 AACCGCTGCGATCAAACGTCTAAATACCCCTAAAGGAAATGACACTGACACTCTATTCTC 866
Query 929 AACAGAGGTAGAGTTATTATCAAGACTCCATCATTACCATGTGGTACCGTTAATTGGATA 988
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 867 AACAGAGGTAGAGTTATTATCAAGACTCCATCATTACCATGTGGTTCCGTTAATTGGATA 926
Query 989 TTGTTCGGAGTTTCATGGCAAACATGCAGAGAGGCTTCTGGTTTTTGAGTACATGTCTTA 1048
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 927 TTGTTCGGAGTTTCATGGCAAACATGCAGAGAGGCTTCTGGTTTTTGAGTACATGTCTTA 986
Query 1049 TGGAAGTCTAAGAGATTGCTTAGATGGAGAGTTAGGGGAGAAAATGACATGGAACATCCG 1108
||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct 987 TGGAAGTCTGAGAGATTGCTTAGATGGAGAGTTGGGGGAGAAAATGACATGGAACATTCG 1046
Query 1109 AATCTCTGTCGCTCTTGGAGCTGCAAGAGGACTTGAGTATCTTCATGAAGCTGCCGCTCC 1168
||| ||||| |||||||||||||||||||| || ||||||||||| |||||||| |||||
Sbjct 1047 AATATCTGTTGCTCTTGGAGCTGCAAGAGGTCTCGAGTATCTTCACGAAGCTGCTGCTCC 1106
Query 1169 AAGAATCTTACACCGAGATGTGAAATCCACAAATATTCTCCTTGATGAGAATTGGCATGC 1228
||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||
Sbjct 1107 AAGAATCTTACACCGAGATGTAAAATCCACTAATATTCTCCTTGATGAGAATTGGCATGC 1166
Query 1229 AAAAATAACAGATCTTGGGATGGCTAAGTGTTTGAGTAGCGATGGTTTACAAAGCGGTTC 1288
||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1167 AAAAATAACCGATCTTGGGATGGCTAAGTGTTTGAGTAGCGACGGTTTACAAAGCGGTTC 1226
Query 1289 AAGCTCTCCAACCACAGGACTACAAGGAACATTTGGCTACTTTGCACCTGAATACGCAAT 1348
||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1227 AAGCTCTCCCACCAAAGGACTACAAGGAACATTTGGCTACTTTGCACCTGAATACGCAAT 1286
Query 1349 TGCAGGATGTGCTTCACAGATGTCAGATGTTTTCAGCTTTGGTGTTGTTCTACTCGAGCT 1408
||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct 1287 TGCAGGATGTGCTTCACAGATGTCAGACGTTTTCAGCTTCGGTGTTGTTCTACTCGAGCT 1346
Query 1409 TATAACCGGAAGGAAACCGATACAGAAACCAAGCAACAACAAAGGCGAAGAAAGCCTAGT 1468
|||||||||||| ||||||||||| |||||||||||||||||||||||||||||||| ||
Sbjct 1347 TATAACCGGAAGAAAACCGATACAAAAACCAAGCAACAACAAAGGCGAAGAAAGCCTCGT 1406
Query 1469 TATATGGGCTGTGCCACGGTTACAAGATAGTAAGCGGGTGATCGAGGAACTGCCTGATCC 1528
||| ||||||||||| || |||||||||||||||||||||||||| ||||||||||||||
Sbjct 1407 TATTTGGGCTGTGCCGCGTTTACAAGATAGTAAGCGGGTGATCGACGAACTGCCTGATCC 1466
Query 1529 GCGGCTAAACGGGAAGTTTGCGGAAGAAGAGATGCAGATAATGGCGTATCTTGCTAAAGA 1588
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1467 GCGGCTAAACGGGAAGTTTGCTGAAGAAGAGATGCAGATAATGGCGTATCTTGCTAAAGA 1526
Query 1589 GTGTTTGCTTTTGGATCCAGAAAG-TAGACCAACAATGAGAGAAGTTGTTCAGATTCTTT 1647
|||||||||||||||||||| ||| ||||||||| |||||||||||||||||||||||||
Sbjct 1527 GTGTTTGCTTTTGGATCCAG-AAGCTAGACCAACTATGAGAGAAGTTGTTCAGATTCTTT 1585
Query 1648 CAACCATCACACCAGACACATCATCCAGACGTAGAAATTTCCCCATTAATTATCTTTTCC 1707
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1586 CAACCATCACACCAGACGCATCATCCAGACGTAGAAATTTCCCCATTAATTATCTTTTCC 1645
Query 1708 AGAGTAACGAGAAGAAGAAAGAAAGCAAAGTGGGATGGTCAAGAGGAGGGAGCAAGAGTG 1767
|||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1646 AGAGCAACGAGAAGAAGAAAGAAAGCAAAGTGGGATGGTCAAGAGGTGGGAGCAAGAGTG 1705
Query 1768 GACAGGAAGAGGAAACAGTGGATC-TGACTGAGCCACGGTTCGAGTCATTCTGCTTGCCG 1826
|||| || || ||||||||||| | |||||||||||||||||||||| ||||||||||||
Sbjct 1706 GACATGAGGATGAAACAGTGGA-CTTGACTGAGCCACGGTTCGAGTCCTTCTGCTTGCCG 1764
Query 1827 AATGTGAAGCCGGTCTTGCTTGAACCATCTGCACATATTTAAAAAGTAGATAGAAAAGCA 1886
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1765 AATGTGAAGCCGGTCTTGCTTGAACCATCTGCACATATTTAAAAAGTAGATAGAAAAGCA 1824
Query 1887 CAGAACAAAAACTGCCATTTCGCACTGTGTAGATAAAAAGCTCACTCTGACGAGAGTGAA 1946
|||||||||||| ||||| || |||||||||||||||||| | || || ||
Sbjct 1825 CAGAACAAAAACAGCCATCTCTCACTGTGTAGATAAAAAG-T------GA--AG--TG-- 1871
Query 1947 GCGTTGAGACTTGAGAGTTTACTACAAGTGAGAGTGTCAAGATTTGTTCTAAACTAGAGG 2006
||||||||||||||||| ||| ||||||||||||||||||||||||| ||||||||
Sbjct 1872 ---TTGAGACTTGAGAGTTTTCTATAAGTGAGAGTGTCAAGATTTGTTCTGAACTAGAGA 1928
Query 2007 ACTTTTAATTGATAATTTTAATAAA 2031
|||||||||| ||||| ||||||||
Sbjct 1929 ACTTTTAATTTATAATCTTAATAAA 1953
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 77704099800
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5