BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G28260.1
Length=2037
Score E
Sequences producing significant alignments: (Bits) Value
Ahg320567 jgi|Araly1|320567|fgenesh1_pm.C_scaffold_4000624 3363 0.0
> Ahg320567 jgi|Araly1|320567|fgenesh1_pm.C_scaffold_4000624
Length=2037
Score = 3363 bits (1821), Expect = 0.0
Identities = 1966/2038 (96%), Gaps = 2/2038 (0%)
Strand=Plus/Plus
Query 1 ATGGGTTATGGTAACTCAAGATCTGTGAGATTTCAAGAAGATCAAGAAGTTGTTCATGGA 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGGTTATGGTAACTCAAGATCTGTGAGATTTCAAGAAGATCAAGAAGTTGTTCATGGA 60
Query 61 GGAGAATCTGGAGTTAAGCTAAAGTTCAAAATCAATGGAACTCAAATAAATAATGTGAAG 120
||||||||||||||||| || ||||||||||||||||||||||||||||| |||||||||
Sbjct 61 GGAGAATCTGGAGTTAAACTTAAGTTCAAAATCAATGGAACTCAAATAAAGAATGTGAAG 120
Query 121 ATGATGAGTAAAGGAAAGTTCTTGAAAGCCAAAGTACTCTCAAGAGTGTTCTCTGAGGAT 180
||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||
Sbjct 121 ATGATGAGTAAAGGAAAGTTCTTGAAAGCTAAAGTACTCTCAAGAGTGTTTTCTGAGGAT 180
Query 181 CTTGAGAGAGTAAAAACCAAAATACTCGATCCTCGTGGACAAACGATACGAAGATGGAAC 240
|||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||
Sbjct 181 CTTGAGAGAGTAAAAACCAAAATACTCGATCCTCGTGGACAAACGATAAGAAAATGGAAC 240
Query 241 AAGATTTTTCTCATAGCATGTTTGGTTTCTCTATTCGTCGACCCTTTGttttttttCTTA 300
|||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||
Sbjct 241 AAGATTTTTCTCATAGCATGTTTGGTTTCTTTATTTGTCGACCCTTTGTTTTTTTTCTTA 300
Query 301 CCGGTCATGAGAAATGAAGCGTGTATCACTATTGGAGTTAGACTTGAAGTGGTTCTTACA 360
||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||
Sbjct 301 CCGGTCATGAGAAATGAAGCGTGTATCACCATTGGAGTCAGACTTGAAGTGGTTCTTACA 360
Query 361 CTTATAAGATCTTTGGCTGATGCTTTTTACATCGCTCAGATTCTTATACGTTTTAGAACA 420
|| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 CTAATAAGATCTTTAGCTGATGCTTTTTACATCGCTCAGATTCTTATACGTTTTAGAACA 420
Query 421 GCTTATATCGCGCCTCCTTCTCGTGTATTTGGTAGAGGTGAGCTTGTGATTGATTCAAGA 480
||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 421 GCTTATATCGCACCTCCTTCTCGTGTATTCGGTAGAGGTGAGCTTGTGATTGATTCAAGA 480
Query 481 AAGATTGCTTGGAGATATCTTCATAAAAGCTTTTGGATTCATCTT-GTTGCTGCTTTACC 539
|||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct 481 AAGATTGCTTGGAGATATCTTCATAAAAGCTTTTGGATTCAT-TTGGTTGCTGCTTTACC 539
Query 540 TTTACCTCAGGTTCTGATTTGGATCATAATCCCAAATCTAAGAGGCTCACCAATGACAAA 599
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 540 ATTACCTCAGGTTTTGATTTGGATCATAATCCCAAATCTAAGAGGCTCACCAATGACAAA 599
Query 600 CACCAAGAATGTTCTTAGATTCATCATCATTTTCCAGTATGTTCCACGGATGTTCTTAAT 659
|||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||
Sbjct 600 CACCAAGAATGTTCTTAGATTCATTATCATTTTCCAGTATGTTCCAAGGATGTTCTTAAT 659
Query 660 ATTCCCGCTATCTCGCCAGATCATTAAAGCCACCGGTGTTGTAACCGAGACCGCGTGGGC 719
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 660 ATTCCCGCTATCTCGCCAGATCATTAAAGCCACCGGTGTTGTAACAGAGACCGCGTGGGC 719
Query 720 AGGAGCTGCCTACAACCTTATGCTATATATGCTAGCAAGCCATGTTTTAGGAGCTTGTTG 779
|||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 720 AGGAGCCGCCTACAACCTTATGTTATATATGCTAGCAAGCCATGTTTTAGGAGCTTGTTG 779
Query 780 GTATTTGCTAGCAGTAGAGAGGCAAGAAGCTTGTTGGAGACATGCTTGCAACATCGAGAA 839
||||||||| || |||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 780 GTATTTGCTTGCGGTAGAGAGGCAAGAGGCTTGTTGGAGACATGCTTGCAACATCGAGAA 839
Query 840 ACAGATTTGTCAATACAGATTCTTTGAGTGTAGAAGATTGGAAGATCCACAGAGGAACTC 899
| | ||||||||||||||||||| ||||| |||||| |||||||||| || ||||||||
Sbjct 840 AGTGGTTTGTCAATACAGATTCTTCGAGTGCAGAAGACTGGAAGATCCGCAAAGGAACTC 899
Query 900 TTGGTTTGAATGGAGCAATATAACAACAATATGCAAACCAGCAAGCAAGTTTTACGAGTT 959
||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||
Sbjct 900 TTGGTTTGAATGGAGCAATATAACAACAATATGTAAACCAGGAAGCAAGTTTTACGAGTT 959
Query 960 TGGTATATTCGGAGATGCAGTAACATCAACTGTTACTTCATCAAAGTTTATAAACAAGTA 1019
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 960 TGGTATATTCGGAGATGCAGTAACATCAACTGTTACTTCATCAAAGTTTATAAACAAGTA 1019
Query 1020 CTTTTACTGTCTATGGTGGGGCTTGAAGAACCTCAGCTCTTTGGGACAAAACCTCGCCAC 1079
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1020 CTTTTACTGTCTCTGGTGGGGCTTGAAGAACCTCAGCTCTTTGGGACAAAACCTCGCCAC 1079
Query 1080 GAGCACTTACGCTGGCGAAATCCTTTTCGCCATCATCATAGCAACTCTCGGGCTTGTTCT 1139
||||||||||||||||||||||||||||||||||||||| || ||||||||||||||| |
Sbjct 1080 GAGCACTTACGCTGGCGAAATCCTTTTCGCCATCATCATTGCGACTCTCGGGCTTGTTTT 1139
Query 1140 GTTTGCATTGCTTATTGGAAATATGCAGACTTATTTACAGTCAACAACAATGAGACTTGA 1199
|||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||
Sbjct 1140 GTTTGCATTGCTTATTGGGAATATGCAGACATATTTACAGTCAACAACAATGAGACTTGA 1199
Query 1200 AGAGTGGAGGATAAGAAGGACAGATACAGAACAATGGATGCATCATAGACAACTTCCACC 1259
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1200 AGAGTGGAGGATAAGAAGGACAGATACAGAACAATGGATGCATCATAGACAGCTTCCACC 1259
Query 1260 AGAGCTAAGACAAGCCGTTAGAAAATATGATCAATACAAGTGGCTAGCTACACGAGGAGT 1319
||||||||| |||||||| ||||||||||||||||||||||||||||| |||||||||||
Sbjct 1260 AGAGCTAAGGCAAGCCGTAAGAAAATATGATCAATACAAGTGGCTAGCGACACGAGGAGT 1319
Query 1320 CGATGAAGAAGCTTTATTGATAAGTCTTCCTCTTGATCTTCGAAGAGACATAAAACGACA 1379
|||||||||||||||||||||||||||||||||||||||||||||||| || ||||| ||
Sbjct 1320 CGATGAAGAAGCTTTATTGATAAGTCTTCCTCTTGATCTTCGAAGAGATATCAAACGCCA 1379
Query 1380 TCTCTGTTTCGATCTTGTTCGCCGAGTACCATTGTTCGATCAAATGGACGAAAGAATGCT 1439
||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1380 TCTCTGTTTTGATCTTGTTCGCCGTGTACCATTGTTCGATCAAATGGACGAAAGAATGCT 1439
Query 1440 TGACGCGATCTGCGAGAGACTAAAACCGGCATTATGCACGGAAGGAACGTTTCTTGTAAG 1499
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1440 TGACGCGATCTGCGAGAGACTAAAACCGGCATTATGCACGGAAGGAACGTTTCTTGTAAG 1499
Query 1500 AGAAGGCGACCCGGTTAACGAAATGCTCTTCATCATTAGAGGCCATTTAGATTCCTACAC 1559
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1500 AGAAGGCGACCCGGTTAACGAAATGCTCTTCATCATTAGAGGCCATCTAGATTCCTACAC 1559
Query 1560 AACCAATGGAGGCAGAACAGGGTTCTTTAACTCTTGTCTCATAGGACCAGGGGATTTCTG 1619
||||||||||||||||||||| ||||| ||||||||||||||||||||||| ||||||||
Sbjct 1560 AACCAATGGAGGCAGAACAGGATTCTTCAACTCTTGTCTCATAGGACCAGGCGATTTCTG 1619
Query 1620 CGGGGAAGAGTTGCTTACATGGGCACTAGATCCTCGTCCCGTTGTGATCTTACCGTCTTC 1679
||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1620 CGGCGAAGAGTTACTTACATGGGCACTAGATCCTCGTCCCGTTGTGATCTTACCGTCTTC 1679
Query 1680 CACACGCACCGTTAAAGCCATTTGTGAAGTTGAAGCCTTTGCATTGAAAGCTGAAGATTT 1739
|||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct 1680 CACACGCACCGTTAAAGCCATTTGCGAAGTTGAGGCCTTTGCATTGAAAGCTGAAGATTT 1739
Query 1740 GCAATTTGTGGCTTCACAGTTTAGAAGACTACATACTAAGCAATTGAGACATAAGTTTCG 1799
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1740 ACAATTTGTGGCTTCACAGTTTAGAAGACTACACACTAAGCAATTGAGACATAAGTTTCG 1799
Query 1800 GTTTTATTCGCATCAATGGAGGACTTGGGCGGCTTGTTTTATACAAGCTGCTTGGAGACG 1859
||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1800 GTTTTATTCTCATCAATGGAGGACTTGGGCGGCTTGTTTTGTACAAGCTGCTTGGAGACG 1859
Query 1860 GCACAGGAAGAGGAAGTACAAGACTGAGCTGAGGGCAAAAGAAGAGTTTCACTATAGGTT 1919
||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct 1860 GCACAGGAAGAGGAAGTACAAGACTGAGCTGAGGGAAAAAGAAGAGTGTCACTATAGGTT 1919
Query 1920 TGAGGCTGCGACGGCTAGGCTAGCAGTGAATGGTGGGAAATATACGCGTAGTGGTTCGGA 1979
||||||||||||||||||||||| ||||| || ||||| ||||||||||||||||||||
Sbjct 1920 CGAGGCTGCGACGGCTAGGCTAGCCGTGAACGGCGGGAAGTATACGCGTAGTGGTTCGGA 1979
Query 1980 TTCTGGTATGATGTCTTCGATTCAAAAACCAGTAGAGCCAGATTTTTCTAGTGAATGA 2037
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1980 TTCTGGTATGATGTCTTCGATTCAAAAACCAGTAGAACCAGATTTTTCTAGTGAATGA 2037
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 76599482695
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5