BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G28310.1
Length=1535
Score E
Sequences producing significant alignments: (Bits) Value
Ahg481676 jgi|Araly1|481676|fgenesh2_kg.4__736__AT2G28310.1 1779 0.0
Ahg919540 jgi|Araly1|919540|scaffold_100821.1 1134 0.0
> Ahg481676 jgi|Araly1|481676|fgenesh2_kg.4__736__AT2G28310.1
Length=1402
Score = 1779 bits (963), Expect = 0.0
Identities = 1097/1158 (95%), Gaps = 23/1158 (2%)
Strand=Plus/Plus
Query 238 AATGGGAACAATGCACCGCAGTGGTGCTCCTCGAAGAACGAATGAAAATGCAAAGGTTAT 297
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 180 AATGGGAACAATGCACCGCAGTGGTGCTCCTAGAAGAACGAATGAAAATGCAAAGGTTAT 239
Query 298 TATTACTACTATTTTGGGGATAGTGTTTGGGACTTTTATTGGTATCACATTACCTTCACT 357
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 240 TATCACTACTATTTTGGGGATAGTGTTTGGGACTTTTATTGGTATCACATTACCTTCACT 299
Query 358 TTCGTTTAAGATTAACTTACCCTCGCGCCTTATATCATCTCTTGATGTAGC-----C--A 410
||| ||||||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct 300 TTCTTTTAAGATTAACTTACCCTCGCGCCTTATATCATCTCTTGATGTAGCTATATCAGA 359
Query 411 T-----A------TC---TGGTGACAAATCCCCTGAAGATTTCGGTTCAAGAAAGTTTCC 456
| | || |||||||||||| ||||||||||||||||||||||| |||||
Sbjct 360 TGGGAAATTGTTGTCTGGTGGTGACAAATCGCCTGAAGATTTCGGTTCAAGAAAATTTCC 419
Query 457 TGAGATATATGTTCCAACTAACCCGCGTGGTGCAGAACTACTACCTCCAGGAATCGTTGT 516
||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||
Sbjct 420 TGAGATATATGTTCCAACTAACCCGCGTGGTGCAGAACTACTACCGCCAGGAATTGTTGT 479
Query 517 GGCGAAAACTGATTTTTACTTGCGTAGATTATGGGGAGAACCTAATGAAGATTTGAAGAA 576
||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 480 GGCAAAAACTGATTTTTATTTGCGTAGATTATGGGGAGAACCTAATGAAGATTTGAAGAA 539
Query 577 GAAGCCAAAATATCTTGTGACATTTACAGTTGGATTTGAGCAGAGGAACCATATTAATGG 636
|||||| || ||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 540 GAAGCCGAAGTATCTTGTGACATTTACTGTTGGATTTGAGCAGAGGAACCATATTAATGG 599
Query 637 AGTTGTTAAGAAGTTTTCTGAAGATTTCCAAATTTTGCTCTTCCATTATGATGGCCGGAC 696
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 600 AGTTGTTAAGAAGTTTTCTGAAGATTTCCAAATTTTGCTCTTCCATTATGATGGCCGGAC 659
Query 697 AACTGAATGGGACCAATTTGAGTGGTCGAAGAGCGCGATTCATATTAGTACAAGAAAGCA 756
|||||| |||||||||||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct 660 AACTGAGTGGGACCAATTTGAGTGGTCAAAGAGCGCGATTCATATTAGTACGAGAAAGCA 719
Query 757 AACAAAATGGTGGTACGCGAAGAGGTTTTTGCATCCTGATGTTGTGTCAGCTTATGAGTA 816
|||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||
Sbjct 720 AACAAAATGGTGGTACGCGAAGAGGTTTTTACATCCTGATGTTGTGTCAGCTTACGAGTA 779
Query 817 CATATTTATATGGGATGAAGATCTTGGAGTGGAGCATTTCAATGCGGATAAGTACATTGA 876
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 780 CATATTTATATGGGATGAAGATCTTGGAGTGGAGCATTTCAATGCGGATAAGTACATTGA 839
Query 877 GTTAGTTAAGAAGCATGGTTTAGAGATTTCTCAACCAGGCTTAGAGCCTAACAATGGACT 936
|||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||
Sbjct 840 GTTAGTTAAGAAGCATGGTTTAGAGATTTCTCAACCAGGCCTAGAGCCCAACAATGGACT 899
Query 937 CACATGGGAAATGACAAAGAGGAGAGGTGACCGGGAAGTCCATAAAGATACAAAAGAGAA 996
|||||||||||||||||| |||||||||||||| || ||||| |||||||| ||||| ||
Sbjct 900 CACATGGGAAATGACAAAAAGGAGAGGTGACCGAGAGGTCCACAAAGATACGAAAGAAAA 959
Query 997 ACCAGGATGGTGTAAAGACCCACATTTACCTCCATGTGCCGCGTTTGTTGAAATAATGGC 1056
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 960 ACCAGGATGGTGTAAAGACCCACATTTACCTCCATGTGCCGCATTTGTTGAAATAATGGC 1019
Query 1057 GCCTGTATTTTCTCGAGAAGCATGGCGATGTGTGTGGCATATGATTCAGAATGATCTGGT 1116
||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1020 GCCCGTATTTTCTCGAGAAGCATGGCGATGTGTGTGGCATATGATTCAGAACGATCTGGT 1079
Query 1117 TCATGGATGGGGTCTCGACTTTGCGCTTAGAAGATGCGTTGAACCTGCTCATGAGAAGAT 1176
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1080 TCATGGATGGGGTCTCGACTTTGCGCTTAGAAGATGCGTTGAACCTGCTCATGAGAAGAT 1139
Query 1177 TGGTGTTGTGGATTCGCAATGGATAATACATAAAGTGATACCTTCACTTGGAAGTCAAGG 1236
||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1140 TGGTGTTGTGGATTCTCAATGGATAATACATAAAGTGATACCGTCACTTGGAAGTCAAGG 1199
Query 1237 AAAGTCAGAGAATGGGAAAGCTCCATGGCAAGGAGTGAGAGATAGATGCAAAATGGAATG 1296
||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1200 AAAGTCAGAGAATGGAAAAGCTCCATGGCAAGGAGTGAGAGAGAGATGCAAAATGGAATG 1259
Query 1297 GACAATGTTTCAGAACCGATTGGCTGATGCTGATAAAGAGTATCTTGGGAAGATGGTGAA 1356
|||||||||||||||||||||||| ||||| ||||||||||| ||||||| |||||| ||
Sbjct 1260 GACAATGTTTCAGAACCGATTGGCAGATGCAGATAAAGAGTACCTTGGGAGGATGGTTAA 1319
Query 1357 AG-ATTAGATTTGttttt 1373
|| || |||||| |||||
Sbjct 1320 AGGAT-AGATTTTTTTTT 1336
> Ahg919540 jgi|Araly1|919540|scaffold_100821.1
Length=1203
Score = 1134 bits (614), Expect = 0.0
Identities = 960/1124 (85%), Gaps = 35/1124 (3%)
Strand=Plus/Plus
Query 239 ATGGGAACAATGCACCGCAGTGGTGCTCCTC-GAAGAACGAATGAAAATGCAAAGGTTAT 297
||||| || |||||||| ||||||||||| | |||| || ||||||||||||||| ||||
Sbjct 24 ATGGGGACGATGCACCGGAGTGGTGCTCC-CAGAAGGACAAATGAAAATGCAAAGCTTAT 82
Query 298 TATTACTACTATTTTGGGGATAGTGTTTGGGACTTTTATTGGTATCACATTACC-TTCAC 356
||||| || || |||| || ||||||||| |||| |||||||||||||||| || |
Sbjct 83 CATTACGACAATCGTGGGAATGGTGTTTGGGTTTTTTGTTGGTATCACATTACCATT-AG 141
Query 357 TTTCGTTT---AAGATTAACTTACCCTC-GCGCCTTATATCATCTCTTGATGTAG-C--- 408
| | ||| ||||||| |||||| || | |||||||||||||||||||||||| |
Sbjct 142 GTGCCTTTAGAAAGATTAGCTTACCTTCAG-GCCTTATATCATCTCTTGATGTAGCCATG 200
Query 409 -C--AT-----A------TCTGGT-GACAAATCCCCTGAAGATTTCGGTTCAAGAAAGTT 453
| || | |||||| | || ||| ||||||||||| |||||||||||||
Sbjct 201 TCAGATGGGAAATTGTTTTCTGGTCG-CAGATCACCTGAAGATTTTGGTTCAAGAAAGTC 259
Query 454 TCCTGAGATATATGTTCCAACTAACCCGCGTGGTGCAGAACTACTACCTCCAGGAATCGT 513
|||| |||||||||||||||| || |||| ||||||||| ||||| || || || || |
Sbjct 260 TCCTAAGATATATGTTCCAACCAATCCGCATGGTGCAGAGCTACTTCCACCTGGGATTAT 319
Query 514 TGTGGCGA-AAACTGATTTTTACTTGCGTAGATTATGGGGAGAACCTAA-TGAAGATTTG 571
||||| | ||||||||||||||||||| ||||||||||| ||||| || ||||||||||
Sbjct 320 AGTGGC-AGAAACTGATTTTTACTTGCGCAGATTATGGGGTGAACC-AAGTGAAGATTTG 377
Query 572 AAGAAGAAGCCAAAATATCTTGTGACATTTACAGTTGGATTTGAGCAGAGGAACCATATT 631
|||||||||||||| ||||| ||||| ||||| |||||||| |||||||||||| | |||
Sbjct 378 AAGAAGAAGCCAAAGTATCTCGTGACTTTTACTGTTGGATTAGAGCAGAGGAACAACATT 437
Query 632 AATGGAGTTGTTAAGAAGTTTTCTGAAGATTTCCAAATTTTGCTCTTCCATTATGATGGC 691
|||| || |||| |||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct 438 AATGCAGCTGTTCTGAAGTTTTCTGAAGATTTCCAAATCTTGCTATTCCATTATGATGGC 497
Query 692 CGGACAACTGAATGGGACCAATTTGAGTGGTCGAAGAGCGCGATTCATATTAGTACAAGA 751
||||||||||| |||||||| ||||||||||| || | ||| || ||||| ||| ||| |
Sbjct 498 CGGACAACTGAGTGGGACCAGTTTGAGTGGTCAAAAAACGCAATACATATCAGTGCAAAA 557
Query 752 AAGCAAACAAAATGGTGGTACGCGAAGAGGTTTTTGCATCCTGATGTTGTGTCAGCTTAT 811
|||||||||||||||||||| || ||||| |||||||||||||||||||| |||||||||
Sbjct 558 AAGCAAACAAAATGGTGGTATGCAAAGAGATTTTTGCATCCTGATGTTGTCTCAGCTTAT 617
Query 812 GAGTACATATTTATATGGGATGAAGATCTTGGAGTGGAGCATTTCAATGCGGATAAGTAC 871
||||| ||||||||||||||||||||||||||||| ||||| |||||||| |||| ||||
Sbjct 618 GAGTATATATTTATATGGGATGAAGATCTTGGAGTCGAGCACTTCAATGCAGATAGGTAC 677
Query 872 ATTGAGTTAGTTAAGAAGCATGGTTTAGAGATTTCTCAACCAGGCTTAGAGCCTAACAAT 931
||||||||||| |||||||||||||| |||||||||||||||||||||||||| |||||
Sbjct 678 ATTGAGTTAGTCAAGAAGCATGGTTTGGAGATTTCTCAACCAGGCTTAGAGCCAAACAAC 737
Query 932 GGACTCACATGGGAAATGACAAAGAGGAGAGGTGACCGGGAAGTCCATAAAGATACAAAA 991
||||| |||||||||||||||||||||||||||||||| || ||||| ||||| || ||
Sbjct 738 GGACTTACATGGGAAATGACAAAGAGGAGAGGTGACCGAGATGTCCACAAAGAAACTAAG 797
Query 992 GAGAAACCAGGATGGTGTAAAGACCCACATTTACCTCCATGTGCCGCGTTTGTTGAAATA 1051
|| |||||||||||||| | || ||||||||||| |||||||| || |||||||| ||
Sbjct 798 GAAAAACCAGGATGGTGCAGTGATCCACATTTACCCCCATGTGCTGCATTTGTTGAGATT 857
Query 1052 ATGGCGCCTGTATTTTCTCGAGAAGCATGGCGATGTGTGTGGCATATGATTCAGAATGAT 1111
||||| |||||||||||| ||||||||||||||||||| |||||||||||||||||||||
Sbjct 858 ATGGCACCTGTATTTTCTAGAGAAGCATGGCGATGTGTATGGCATATGATTCAGAATGAT 917
Query 1112 CTGGTTCATGGATGGGGTCTCGACTTTGCGCTTAGAAGATGCGTTGAACCTGCTCATGAG 1171
|| |||||||||||||||||||| ||||| || ||| |||||||| | ||||||||||||
Sbjct 918 CTTGTTCATGGATGGGGTCTCGATTTTGCTCTCAGACGATGCGTTCAGCCTGCTCATGAG 977
Query 1172 AAGATTGGTGTTGTGGATTCGCAATGGATAATACATAAAGTGATACCTTCACTTGGAAGT 1231
||||||||||| || ||||| || ||||| || ||| ||||||| ||||| |||||||||
Sbjct 978 AAGATTGGTGTGGTAGATTCACAGTGGATTATCCATCAAGTGATTCCTTCCCTTGGAAGT 1037
Query 1232 CAAGGAAAGTCAGAGAATGGGAAAGCTCCATGGCAAGGAGTGAGAGATAGATGCA-AAAT 1290
|| || |||| ||||| |||||| ||||||||||||| |||||||| ||||||| |||
Sbjct 1038 CAGGGTGAGTCGGAGAAGGGGAAATCTCCATGGCAAGGGGTGAGAGAGAGATGCAGAAAC 1097
Query 1291 GGAATGGACAATGTTTCAGAACCGATTGGCTGATGCTGATAAAG 1334
| ||||||| ||||| ||||| || |||| || || |||||||
Sbjct 1098 G-AATGGACGATGTTCCAGAATCGCGTGGCAGAAGCAGATAAAG 1140
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57478179705
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5