BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G28315.1
Length=1179
Score E
Sequences producing significant alignments: (Bits) Value
Ahg952538 jgi|Araly1|952538|scaffold_8500004.1 1749 0.0
Ahg320561 jgi|Araly1|320561|fgenesh1_pm.C_scaffold_4000618 1724 0.0
> Ahg952538 jgi|Araly1|952538|scaffold_8500004.1
Length=1070
Score = 1749 bits (947), Expect = 0.0
Identities = 1030/1070 (96%), Gaps = 5/1070 (0%)
Strand=Plus/Plus
Query 1 GGAGAGAGAGGAAG-AAAAAATGGGAGAGATGAAGAGTATGCAAATGGGTGTGATTGGAG 59
||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 GGAGAGAGAGGGAGAAAAAAATGGGAGAGATGAAGAGTATGCAAATGGGTGTGATTGGAG 60
Query 60 CATTGTTTCTATCAGTTGCATCTTCTGTCTCCATTGTCATTTGCAACAAAGCTTTGATGA 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 CATTGTTTCTATCAGTTGCATCTTCTGTCTCCATTGTCATTTGCAACAAAGCTTTGATGA 120
Query 120 CCAATCTTGGTTTCCCTTTTGCAACAACACTTACTAGTTGGCATTTGATGGTAACATATT 179
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 121 CCAATCTTGGTTTCCCTTTTGCAACAACACTTACAAGTTGGCATTTGATGGTAACATATT 180
Query 180 GCACACTTCATGTGGCATATAAACTAAACTTCTTTGAGAATAAACCAATAGACATGAGAA 239
||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct 181 GCACACTTCATGTGGCATATAAACTAAACTTCTTTGAGAATAAACCAATAGACGTGCGAA 240
Query 240 CTGTTGTTCTCTTTGGCCTCCTCAATGGCATTTCCATTGGTCTCCTCAATCTCAGCCTCG 299
||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||
Sbjct 241 CTGTTGTTCTCTTTGGCCTTCTCAATGGCATCTCCATTGGTCTCCTCAATCTCAGCCTCG 300
Query 300 GCTTTAATTCCATCGGCTTCTATCAAATGACCAAACTTGCTATCATACCATTCACTGTTC 359
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 GCTTCAATTCCATCGGCTTCTATCAAATGACCAAACTTGCTATCATACCATTCACTGTTC 360
Query 360 TTTTAGAAACCCTCTTCCTCAACAAGAAGTTCAGCCAGAAGATAAAATTCTCATTGTTTT 419
||||||||||||||||| ||||||||||||| |||||||||||||| ||||| || ||||
Sbjct 361 TTTTAGAAACCCTCTTCTTCAACAAGAAGTTTAGCCAGAAGATAAAGTTCTCTTTATTTT 420
Query 420 TGCTGCTAGTTGGGGTTGGTATAGCATCAATCACAGATCTTCAGCTCAATTTTGTTGGCT 479
|||| || ||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 421 TGCTACTGGTTGGGGTTGGTATAGCATCAATCACAGATCTTCAGCTCAACTTTGTTGGCT 480
Query 480 CTGTTCTATCTCTCCTTGCCATTGCCACAACTTGCGTCGGCCAAATTCTAACAAACACTA 539
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 481 CTGTTCTCTCTCTCCTTGCCATTGCCACAACTTGCGTCGGCCAAATTCTAACAAACACAA 540
Query 540 TCCAGAAGAGACTGAACGTGACATCAACACAACTCCTATACCAATCAGCCCCGTTCCAAG 599
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 541 TCCAGAAGAGACTGAACGTGACATCAACACAACTCCTATACCAATCGGCCCCGTTCCAAG 600
Query 600 CTGCTATACTCTTCGTCTCGGGTCCTTTTGTCGACAAATACCTCACTAGCCTCAATGTTT 659
| ||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||
Sbjct 601 CCGCTATACTCTTCGTCTCGGGTCCGTTTGTCGACAAATACCTCACTCGCCTCAATGTTT 660
Query 660 TCTCCTTCCATTACTCTCCCATCGTCGTGGGGTTCATAACGTTGTCGTGTTTGATAGCGG 719
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 661 TCTCCTTCCATTACTCTCCCATCGTCGCGGGGTTCATAACGTTGTCGTGTTTGATAGCGG 720
Query 720 TTTCGGTTAACTTCAGTACGTTTTTAGTGATTGGAAAGACATCTCCGGTGACATACCAAG 779
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 721 TTTCGGTTAACTTCAGTACGTTTTTAGTGATTGGAAAGACATCTCCAGTGACATACCAAG 780
Query 780 TCTTGGGACATCTCAAAACGTGTTTGGTGCTCGCATTTGGTTACACTCTCCTTCACGATC 839
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 781 TCTTGGGACATCTCAAAACGTGTTTGGTGCTCGCATTTGGTTACACTCTCCTCCACGATC 840
Query 840 CCTTCACTCCTCGTAATATCGCAGGAATACTCATCGCTGTCCTCGGGATGCTTCTCTACT 899
| |||||||||||||| ||||||||||| |||||||| |||||||| |||||||||||||
Sbjct 841 CTTTCACTCCTCGTAACATCGCAGGAATCCTCATCGCGGTCCTCGGCATGCTTCTCTACT 900
Query 900 CCTACTTCTGCTCAGTTGCTTCTAAATCCAAACAAGCCTCCTCCGATTCCACTTTTCTTG 959
|||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||
Sbjct 901 CCTACTTCTGCTCAGTTGCTTCTAAATCCAAACAAGCCTCCTCCGAGTCTACTTTTCTTG 960
Query 960 GGAAAGATAGAGATACGACGCCGCTTTTGGGACAAGAAAATGAGAACCATCATGAAGCCA 1019
||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||
Sbjct 961 GGAAAGATAGAGATACGACGCCGCTTTTGGGTCAAGAAAAAGAGAACCATCATGAAGCCA 1020
Query 1020 AGAAATTAGACAAGCATTCTCCAGTATGAAATAGTACAATAACTCTTTCT 1069
||||||||||||||||||||||||| |||| || || |||||||||||
Sbjct 1021 AGAAATTAGACAAGCATTCTCCAGTGTGAA-TAATA---TAACTCTTTCT 1066
> Ahg320561 jgi|Araly1|320561|fgenesh1_pm.C_scaffold_4000618
Length=1029
Score = 1724 bits (933), Expect = 0.0
Identities = 997/1029 (97%), Gaps = 0/1029 (0%)
Strand=Plus/Plus
Query 20 ATGGGAGAGATGAAGAGTATGCAAATGGGTGTGATTGGAGCATTGTTTCTATCAGTTGCA 79
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGGAGAGATGAAGAGTATGCAAATGGGTGTGATTGGAGCATTGTTTCTATCAGTTGCA 60
Query 80 TCTTCTGTCTCCATTGTCATTTGCAACAAAGCTTTGATGACCAATCTTGGTTTCCCTTTT 139
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 TCTTCTGTCTCCATTGTCATTTGCAACAAAGCTTTGATGACCAATCTTGGTTTCCCTTTT 120
Query 140 GCAACAACACTTACTAGTTGGCATTTGATGGTAACATATTGCACACTTCATGTGGCATAT 199
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 GCAACAACACTTACAAGTTGGCATTTGATGGTAACATATTGCACACTTCATGTGGCATAT 180
Query 200 AAACTAAACTTCTTTGAGAATAAACCAATAGACATGAGAACTGTTGTTCTCTTTGGCCTC 259
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 181 AAACTAAACTTCTTTGAGAATAAACCAATAGACATGCGAACTGTTGTTCTCTTTGGCCTT 240
Query 260 CTCAATGGCATTTCCATTGGTCTCCTCAATCTCAGCCTCGGCTTTAATTCCATCGGCTTC 319
||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 241 CTCAATGGCATCTCCATTGGTCTCCTCAATCTCAGCCTCGGCTTCAATTCCATCGGCTTC 300
Query 320 TATCAAATGACCAAACTTGCTATCATACCATTCACTGTTCTTTTAGAAACCCTCTTCCTC 379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 301 TATCAAATGACCAAACTTGCTATCATACCATTCACTGTTCTTTTAGAAACCCTCTTCTTC 360
Query 380 AACAAGAAGTTCAGCCAGAAGATAAAATTCTCATTGTTTTTGCTGCTAGTTGGGGTTGGT 439
||||||||||| |||||||||||||| ||||| || |||||||| || ||||||||||||
Sbjct 361 AACAAGAAGTTTAGCCAGAAGATAAAGTTCTCTTTATTTTTGCTACTGGTTGGGGTTGGT 420
Query 440 ATAGCATCAATCACAGATCTTCAGCTCAATTTTGTTGGCTCTGTTCTATCTCTCCTTGCC 499
||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 421 ATAGCATCAATCACAGATCTTCAGCTCAACTTTGTTGGCTCTGTTCTCTCTCTCCTTGCC 480
Query 500 ATTGCCACAACTTGCGTCGGCCAAATTCTAACAAACACTATCCAGAAGAGACTGAACGTG 559
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 481 ATTGCCACAACTTGCGTCGGCCAAATTCTAACAAACACAATCCAGAAGAGACTGAACGTG 540
Query 560 ACATCAACACAACTCCTATACCAATCAGCCCCGTTCCAAGCTGCTATACTCTTCGTCTCG 619
|||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||
Sbjct 541 ACATCAACACAACTCCTATACCAATCGGCCCCGTTCCAAGCCGCTATACTCTTCGTCTCG 600
Query 620 GGTCCTTTTGTCGACAAATACCTCACTAGCCTCAATGTTTTCTCCTTCCATTACTCTCCC 679
||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 601 GGTCCGTTTGTCGACAAATACCTCACTCGCCTCAATGTTTTCTCCTTCCATTACTCTCCC 660
Query 680 ATCGTCGTGGGGTTCATAACGTTGTCGTGTTTGATAGCGGTTTCGGTTAACTTCAGTACG 739
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 ATCGTCGCGGGGTTCATAACGTTGTCGTGTTTGATAGCGGTTTCGGTTAACTTCAGTACG 720
Query 740 TTTTTAGTGATTGGAAAGACATCTCCGGTGACATACCAAGTCTTGGGACATCTCAAAACG 799
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 721 TTTTTAGTGATTGGAAAGACATCTCCAGTGACATACCAAGTCTTGGGACATCTCAAAACG 780
Query 800 TGTTTGGTGCTCGCATTTGGTTACACTCTCCTTCACGATCCCTTCACTCCTCGTAATATC 859
|||||||||||||||||||||||||||||||| |||||||| |||||||||||||| |||
Sbjct 781 TGTTTGGTGCTCGCATTTGGTTACACTCTCCTCCACGATCCTTTCACTCCTCGTAACATC 840
Query 860 GCAGGAATACTCATCGCTGTCCTCGGGATGCTTCTCTACTCCTACTTCTGCTCAGTTGCT 919
|||||||| |||||||| |||||||| |||||||||||||||||||||||||||||||||
Sbjct 841 GCAGGAATCCTCATCGCGGTCCTCGGCATGCTTCTCTACTCCTACTTCTGCTCAGTTGCT 900
Query 920 TCTAAATCCAAACAAGCCTCCTCCGATTCCACTTTTCTTGGGAAAGATAGAGATACGACG 979
|||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct 901 TCTAAATCCAAACAAGCCTCCTCCGAGTCTACTTTTCTTGGGAAAGATAGAGATACGACG 960
Query 980 CCGCTTTTGGGACAAGAAAATGAGAACCATCATGAAGCCAAGAAATTAGACAAGCATTCT 1039
||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 961 CCGCTTTTGGGTCAAGAAAAAGAGAACCATCATGAAGCCAAGAAATTAGACAAGCATTCT 1020
Query 1040 CCAGTATGA 1048
||||| |||
Sbjct 1021 CCAGTGTGA 1029
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43993846218
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5