BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G28315.1 Length=1179 Score E Sequences producing significant alignments: (Bits) Value Ahg952538 jgi|Araly1|952538|scaffold_8500004.1 1749 0.0 Ahg320561 jgi|Araly1|320561|fgenesh1_pm.C_scaffold_4000618 1724 0.0 > Ahg952538 jgi|Araly1|952538|scaffold_8500004.1 Length=1070 Score = 1749 bits (947), Expect = 0.0 Identities = 1030/1070 (96%), Gaps = 5/1070 (0%) Strand=Plus/Plus Query 1 GGAGAGAGAGGAAG-AAAAAATGGGAGAGATGAAGAGTATGCAAATGGGTGTGATTGGAG 59 ||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 GGAGAGAGAGGGAGAAAAAAATGGGAGAGATGAAGAGTATGCAAATGGGTGTGATTGGAG 60 Query 60 CATTGTTTCTATCAGTTGCATCTTCTGTCTCCATTGTCATTTGCAACAAAGCTTTGATGA 119 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 61 CATTGTTTCTATCAGTTGCATCTTCTGTCTCCATTGTCATTTGCAACAAAGCTTTGATGA 120 Query 120 CCAATCTTGGTTTCCCTTTTGCAACAACACTTACTAGTTGGCATTTGATGGTAACATATT 179 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 121 CCAATCTTGGTTTCCCTTTTGCAACAACACTTACAAGTTGGCATTTGATGGTAACATATT 180 Query 180 GCACACTTCATGTGGCATATAAACTAAACTTCTTTGAGAATAAACCAATAGACATGAGAA 239 ||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||| Sbjct 181 GCACACTTCATGTGGCATATAAACTAAACTTCTTTGAGAATAAACCAATAGACGTGCGAA 240 Query 240 CTGTTGTTCTCTTTGGCCTCCTCAATGGCATTTCCATTGGTCTCCTCAATCTCAGCCTCG 299 ||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||| Sbjct 241 CTGTTGTTCTCTTTGGCCTTCTCAATGGCATCTCCATTGGTCTCCTCAATCTCAGCCTCG 300 Query 300 GCTTTAATTCCATCGGCTTCTATCAAATGACCAAACTTGCTATCATACCATTCACTGTTC 359 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 301 GCTTCAATTCCATCGGCTTCTATCAAATGACCAAACTTGCTATCATACCATTCACTGTTC 360 Query 360 TTTTAGAAACCCTCTTCCTCAACAAGAAGTTCAGCCAGAAGATAAAATTCTCATTGTTTT 419 ||||||||||||||||| ||||||||||||| |||||||||||||| ||||| || |||| Sbjct 361 TTTTAGAAACCCTCTTCTTCAACAAGAAGTTTAGCCAGAAGATAAAGTTCTCTTTATTTT 420 Query 420 TGCTGCTAGTTGGGGTTGGTATAGCATCAATCACAGATCTTCAGCTCAATTTTGTTGGCT 479 |||| || ||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 421 TGCTACTGGTTGGGGTTGGTATAGCATCAATCACAGATCTTCAGCTCAACTTTGTTGGCT 480 Query 480 CTGTTCTATCTCTCCTTGCCATTGCCACAACTTGCGTCGGCCAAATTCTAACAAACACTA 539 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 481 CTGTTCTCTCTCTCCTTGCCATTGCCACAACTTGCGTCGGCCAAATTCTAACAAACACAA 540 Query 540 TCCAGAAGAGACTGAACGTGACATCAACACAACTCCTATACCAATCAGCCCCGTTCCAAG 599 |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 541 TCCAGAAGAGACTGAACGTGACATCAACACAACTCCTATACCAATCGGCCCCGTTCCAAG 600 Query 600 CTGCTATACTCTTCGTCTCGGGTCCTTTTGTCGACAAATACCTCACTAGCCTCAATGTTT 659 | ||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||| Sbjct 601 CCGCTATACTCTTCGTCTCGGGTCCGTTTGTCGACAAATACCTCACTCGCCTCAATGTTT 660 Query 660 TCTCCTTCCATTACTCTCCCATCGTCGTGGGGTTCATAACGTTGTCGTGTTTGATAGCGG 719 ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 661 TCTCCTTCCATTACTCTCCCATCGTCGCGGGGTTCATAACGTTGTCGTGTTTGATAGCGG 720 Query 720 TTTCGGTTAACTTCAGTACGTTTTTAGTGATTGGAAAGACATCTCCGGTGACATACCAAG 779 |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 721 TTTCGGTTAACTTCAGTACGTTTTTAGTGATTGGAAAGACATCTCCAGTGACATACCAAG 780 Query 780 TCTTGGGACATCTCAAAACGTGTTTGGTGCTCGCATTTGGTTACACTCTCCTTCACGATC 839 |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 781 TCTTGGGACATCTCAAAACGTGTTTGGTGCTCGCATTTGGTTACACTCTCCTCCACGATC 840 Query 840 CCTTCACTCCTCGTAATATCGCAGGAATACTCATCGCTGTCCTCGGGATGCTTCTCTACT 899 | |||||||||||||| ||||||||||| |||||||| |||||||| ||||||||||||| Sbjct 841 CTTTCACTCCTCGTAACATCGCAGGAATCCTCATCGCGGTCCTCGGCATGCTTCTCTACT 900 Query 900 CCTACTTCTGCTCAGTTGCTTCTAAATCCAAACAAGCCTCCTCCGATTCCACTTTTCTTG 959 |||||||||||||||||||||||||||||||||||||||||||||| || |||||||||| Sbjct 901 CCTACTTCTGCTCAGTTGCTTCTAAATCCAAACAAGCCTCCTCCGAGTCTACTTTTCTTG 960 Query 960 GGAAAGATAGAGATACGACGCCGCTTTTGGGACAAGAAAATGAGAACCATCATGAAGCCA 1019 ||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||| Sbjct 961 GGAAAGATAGAGATACGACGCCGCTTTTGGGTCAAGAAAAAGAGAACCATCATGAAGCCA 1020 Query 1020 AGAAATTAGACAAGCATTCTCCAGTATGAAATAGTACAATAACTCTTTCT 1069 ||||||||||||||||||||||||| |||| || || ||||||||||| Sbjct 1021 AGAAATTAGACAAGCATTCTCCAGTGTGAA-TAATA---TAACTCTTTCT 1066 > Ahg320561 jgi|Araly1|320561|fgenesh1_pm.C_scaffold_4000618 Length=1029 Score = 1724 bits (933), Expect = 0.0 Identities = 997/1029 (97%), Gaps = 0/1029 (0%) Strand=Plus/Plus Query 20 ATGGGAGAGATGAAGAGTATGCAAATGGGTGTGATTGGAGCATTGTTTCTATCAGTTGCA 79 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 ATGGGAGAGATGAAGAGTATGCAAATGGGTGTGATTGGAGCATTGTTTCTATCAGTTGCA 60 Query 80 TCTTCTGTCTCCATTGTCATTTGCAACAAAGCTTTGATGACCAATCTTGGTTTCCCTTTT 139 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 61 TCTTCTGTCTCCATTGTCATTTGCAACAAAGCTTTGATGACCAATCTTGGTTTCCCTTTT 120 Query 140 GCAACAACACTTACTAGTTGGCATTTGATGGTAACATATTGCACACTTCATGTGGCATAT 199 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 121 GCAACAACACTTACAAGTTGGCATTTGATGGTAACATATTGCACACTTCATGTGGCATAT 180 Query 200 AAACTAAACTTCTTTGAGAATAAACCAATAGACATGAGAACTGTTGTTCTCTTTGGCCTC 259 |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 181 AAACTAAACTTCTTTGAGAATAAACCAATAGACATGCGAACTGTTGTTCTCTTTGGCCTT 240 Query 260 CTCAATGGCATTTCCATTGGTCTCCTCAATCTCAGCCTCGGCTTTAATTCCATCGGCTTC 319 ||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 241 CTCAATGGCATCTCCATTGGTCTCCTCAATCTCAGCCTCGGCTTCAATTCCATCGGCTTC 300 Query 320 TATCAAATGACCAAACTTGCTATCATACCATTCACTGTTCTTTTAGAAACCCTCTTCCTC 379 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 301 TATCAAATGACCAAACTTGCTATCATACCATTCACTGTTCTTTTAGAAACCCTCTTCTTC 360 Query 380 AACAAGAAGTTCAGCCAGAAGATAAAATTCTCATTGTTTTTGCTGCTAGTTGGGGTTGGT 439 ||||||||||| |||||||||||||| ||||| || |||||||| || |||||||||||| Sbjct 361 AACAAGAAGTTTAGCCAGAAGATAAAGTTCTCTTTATTTTTGCTACTGGTTGGGGTTGGT 420 Query 440 ATAGCATCAATCACAGATCTTCAGCTCAATTTTGTTGGCTCTGTTCTATCTCTCCTTGCC 499 ||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||| Sbjct 421 ATAGCATCAATCACAGATCTTCAGCTCAACTTTGTTGGCTCTGTTCTCTCTCTCCTTGCC 480 Query 500 ATTGCCACAACTTGCGTCGGCCAAATTCTAACAAACACTATCCAGAAGAGACTGAACGTG 559 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 481 ATTGCCACAACTTGCGTCGGCCAAATTCTAACAAACACAATCCAGAAGAGACTGAACGTG 540 Query 560 ACATCAACACAACTCCTATACCAATCAGCCCCGTTCCAAGCTGCTATACTCTTCGTCTCG 619 |||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||| Sbjct 541 ACATCAACACAACTCCTATACCAATCGGCCCCGTTCCAAGCCGCTATACTCTTCGTCTCG 600 Query 620 GGTCCTTTTGTCGACAAATACCTCACTAGCCTCAATGTTTTCTCCTTCCATTACTCTCCC 679 ||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 601 GGTCCGTTTGTCGACAAATACCTCACTCGCCTCAATGTTTTCTCCTTCCATTACTCTCCC 660 Query 680 ATCGTCGTGGGGTTCATAACGTTGTCGTGTTTGATAGCGGTTTCGGTTAACTTCAGTACG 739 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 661 ATCGTCGCGGGGTTCATAACGTTGTCGTGTTTGATAGCGGTTTCGGTTAACTTCAGTACG 720 Query 740 TTTTTAGTGATTGGAAAGACATCTCCGGTGACATACCAAGTCTTGGGACATCTCAAAACG 799 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 721 TTTTTAGTGATTGGAAAGACATCTCCAGTGACATACCAAGTCTTGGGACATCTCAAAACG 780 Query 800 TGTTTGGTGCTCGCATTTGGTTACACTCTCCTTCACGATCCCTTCACTCCTCGTAATATC 859 |||||||||||||||||||||||||||||||| |||||||| |||||||||||||| ||| Sbjct 781 TGTTTGGTGCTCGCATTTGGTTACACTCTCCTCCACGATCCTTTCACTCCTCGTAACATC 840 Query 860 GCAGGAATACTCATCGCTGTCCTCGGGATGCTTCTCTACTCCTACTTCTGCTCAGTTGCT 919 |||||||| |||||||| |||||||| ||||||||||||||||||||||||||||||||| Sbjct 841 GCAGGAATCCTCATCGCGGTCCTCGGCATGCTTCTCTACTCCTACTTCTGCTCAGTTGCT 900 Query 920 TCTAAATCCAAACAAGCCTCCTCCGATTCCACTTTTCTTGGGAAAGATAGAGATACGACG 979 |||||||||||||||||||||||||| || |||||||||||||||||||||||||||||| Sbjct 901 TCTAAATCCAAACAAGCCTCCTCCGAGTCTACTTTTCTTGGGAAAGATAGAGATACGACG 960 Query 980 CCGCTTTTGGGACAAGAAAATGAGAACCATCATGAAGCCAAGAAATTAGACAAGCATTCT 1039 ||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 961 CCGCTTTTGGGTCAAGAAAAAGAGAACCATCATGAAGCCAAGAAATTAGACAAGCATTCT 1020 Query 1040 CCAGTATGA 1048 ||||| ||| Sbjct 1021 CCAGTGTGA 1029 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 43993846218 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5