BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G28330.1
Length=868
Score E
Sequences producing significant alignments: (Bits) Value
Ahg481672 jgi|Araly1|481672|fgenesh2_kg.4__732__AT2G28330.1 510 6e-144
> Ahg481672 jgi|Araly1|481672|fgenesh2_kg.4__732__AT2G28330.1
Length=697
Score = 510 bits (276), Expect = 6e-144
Identities = 410/468 (88%), Gaps = 35/468 (7%)
Strand=Plus/Plus
Query 135 ATGGAGCAAGAAGAACCATGTGAAGCGAAAGAAACAGCTTCTTCTTCGATAGAGCCGAAA 194
|||||||||||||||||||||||||| |||||||||| |||||||||||||||| |||
Sbjct 100 ATGGAGCAAGAAGAACCATGTGAAGCAAAAGAAACAG---CTTCTTCGATAGAGCCCAAA 156
Query 195 ACACCAAACCCTAATGTCCCAGATTCGATTCCTGCCATTGATTCCGATTCTTCTCTTTCG 254
|||||||||||||||||||||||||||||||| || || ||||| ||||||||||| |||
Sbjct 157 ACACCAAACCCTAATGTCCCAGATTCGATTCCGGCTATCGATTCTGATTCTTCTCTATCG 216
Query 255 GAAGAAGAAATAGTTACAGAGAAAGACAGAGGAATCGTCACTTTGTCTCCACTGTGTAAA 314
|||||||||||| ||| ||||||||||||||||||||||||||||| | || | |
Sbjct 217 GAAGAAGAAATAACCACAAAGAAAGACAGAGGAATCGTCACTTTGTCT-C-CT-T-T--- 269
Query 315 CAGAGGATTGATTCTGCTTCGA-TCTCGGATTGTGTTTTGGTATCTGATGACGAAATTAT 373
| | |||||||||| ||| | |||| ||||||||||||||||||||||| ||||||||
Sbjct 270 --GTGTATTGATTCTGTTTC-AGTCTCAGATTGTGTTTTGGTATCTGATGAAGAAATTAT 326
Query 374 AGAGTCTCTTTATCAGAATCTGTTGAGAGTTATTCTCTCATTGCAGCAGATTCAAAGTGT 433
|||||| |||||||||||||||||||||||||| |||| | || ||| | |
Sbjct 327 AGAGTCAATTTATCAGAATCTGTTGAGAGTTATTGTCTC--T---GC---TTC----T-T 373
Query 434 AGCTGTTGTTCCTGAGATTTGGTGTTTTGATGGTTGTAAAACACCGCCTCCTTCGTCTCG 493
| | |||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 374 --C------TACTGAGATTTGGTGTTTTGATGGTTGTAAGACACCGCCTCCTTCGTCTCG 425
Query 494 GAATCTCGATTCGAATATGGTTAGTGATACTTGTCCTGGAGCTCCTATGAAGCTCACTAA 553
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 426 GAATCTCGATTCGAATATGGTTAATGATACTTGTCCTGGAGCTCCTATGAAGCTCACTAA 485
Query 554 GATATCTAGGAATATTGATTCTGGATTAAGAAGAAAACTCTTCTGAGT 601
|||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 486 GATAGCTAGGAATATTGATTCTGGATTAAGAAGAAAACTCTTCTGAGT 533
Score = 211 bits (114), Expect = 6e-54
Identities = 155/173 (90%), Gaps = 9/173 (5%)
Strand=Plus/Plus
Query 646 TGTTGTAGTAAGCTATAAGAGATTTAGGGGTTTTTTAAACTCTTATGGCTCTTGTGATTT 705
||||||||| ||||||||||| ||||| || | | |||||||||| ||| | ||||||
Sbjct 534 TGTTGTAGT-AGCTATAAGAGCTTTAGAGG--TGAT-AACTCTTATGACTC-T-TGATTT 587
Query 706 GACTTTTGTTTGTACAGTCTTGTTAGGCTTTTTATGTGTAATTGCTAGCTAAAGCTAGTT 765
|||||||||||||||||| || ||||| ||||||||||||||||||||||||||||||||
Sbjct 588 GACTTTTGTTTGTACAGTTTTCTTAGGTTTTTTATGTGTAATTGCTAGCTAAAGCTAGTT 647
Query 766 GTTGTTGTTGGAGACATTCAGTTTCTGTTCTTTCTTTCTTGTCTGTAATTTAT 818
||||| | ||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 648 GTTGT-G--GGAGACATTCAGTTTTTGTTCTTTCTTTCTTGTCTGTAATTTAT 697
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32137619031
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5