BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G28340.1
Length=876
Score E
Sequences producing significant alignments: (Bits) Value
Ahg933188 jgi|Araly1|933188|scaffold_401176.1 556 7e-158
> Ahg933188 jgi|Araly1|933188|scaffold_401176.1
Length=1008
Score = 556 bits (301), Expect = 7e-158
Identities = 493/584 (84%), Gaps = 20/584 (3%)
Strand=Plus/Plus
Query 1 ATGAATAACGATTTGTGGTTACCTGAAGAGGACTTCAAGGGTCTACCGGATAATTTCCTT 60
|||| ||||| || ||||||||||||||||||||||||||||||| ||||||| ||| ||
Sbjct 26 ATGAGTAACGGTTCGTGGTTACCTGAAGAGGACTTCAAGGGTCTATCGGATAACTTCTTT 85
Query 61 GATAATCTCGTTGATCCTACCAATGATGTTTCTGTAGAAGATATAGAGACCGGCGATGAT 120
||||||||| ||||||||| ||||| ||||| ||||||| || ||||| | |||||||
Sbjct 86 GATAATCTCATTGATCCTAATGATGATTTTTCTCTAGAAGACATCGAGACTGCCGATGAT 145
Query 121 GAGGGAGATTGGGATGCCAAATTTCAAAAGCTCGTACCTCCACCATTGGATG-AGCTAAT 179
|||||||||||||||||| |||||||| |||||||||||||| ||||||| | ||||
Sbjct 146 GAGGGAGATTGGGATGCCGGGTTTCAAAACCTCGTACCTCCACCGTTGGATGTA-CTAAC 204
Query 180 GAGTTTGTCCTATGAGTTCACTTGCAATGGACAGCGTGTGCAAGTTCAGAAGCATGTGCC 239
||||||||||| |||||| ||||||||||||||||||||| ||| ||||||| ||| ||
Sbjct 205 GAGTTTGTCCTCTGAGTTTTCTTGCAATGGACAGCGTGTGCCAGTCCAGAAGCCTGTACC 264
Query 240 AATTTTGAAGCAGTCGAGTTCTTCAGAAGTCTTCTCTACTGTTGATAACTCCCCTCCTAA 299
| ||||||||||||| ||||||| |||| | | |||||||||||||||||| || || |
Sbjct 265 CAGTTTGAAGCAGTCGTGTTCTTCGGAAG-C-T-TCTACTGTTGATAACTCCTCTGCTGA 321
Query 300 TGTCAAAGTCTCAAAGTTGTTGCAATCTTTAAGCCCAGTCTCAGTCCTCAAGAACACCAA 359
|||||||||||||||| | || ||||| | ||||||||||||||| || |||| |||||
Sbjct 322 TGTCAAAGTCTCAAAGCTATTTCAATCCTCAAGCCCAGTCTCAGTTCTTGAGAATACCAA 381
Query 360 CGGTTCTGGCTCACCCCAAAACCCAAACGGAGATCAGAAACTGGCCTTTCTCGTGAAAGG 419
|||||| | |||| | | ||||| | || ||| || |||||||||||||| |||||||||
Sbjct 382 CGGTTCAGTCTCATCTCTAAACCTACACAGAGCTCTGAAACTGGCCTTTCCCGTGAAAGG 441
Query 420 CATCAGAAGCAAGCGCAAACGCCCCACACTACTGAGAGTTACATTCCTCAAATCATTTCT 479
||| |||| ||||||||||||||||||||| |||||||||||||||||| | |||||
Sbjct 442 CATAAGAAACAAGCGCAAACGCCCCACACTGCTGAGAGTTACATTCCTCCAGGCATTTGG 501
Query 480 ATTAGAGATGTCACAGCAGTTTGCTCC-G--G-AT--GAATCTG-----AA----TCTTC 524
||| || ||||| |||||||||||||| | | || ||||||| || |||||
Sbjct 502 ATTTGAAATGTCTCAGCAGTTTGCTCCGGATGAATCAGAATCTGAAATTAACCTCTCTTC 561
Query 525 TGAGATTTCCGCCTTGAAGAAACGCAAGAAGAACAAGAGTCGTC 568
|||||| |||||| ||||||||||||||||||||||||||||
Sbjct 562 TGAGATATCCGCCAACAAGAAACGCAAGAAGAACAAGAGTCGTC 605
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32442602367
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5