BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G28350.1
Length=2265
Score E
Sequences producing significant alignments: (Bits) Value
Ahg481671 jgi|Araly1|481671|fgenesh2_kg.4__731__AT2G28350.1 3121 0.0
> Ahg481671 jgi|Araly1|481671|fgenesh2_kg.4__731__AT2G28350.1
Length=2220
Score = 3121 bits (1690), Expect = 0.0
Identities = 1976/2109 (94%), Gaps = 40/2109 (2%)
Strand=Plus/Plus
Query 1 ATGGAGCAAGAGAAAAGCTTGGATCCACAACTATGGCATGCTTGTGCAGGATCAATGGTT 60
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1 ATGGAGCAAGAGAAAAGCTTGGATCCACAACTATGGCATGCTTGTGCTGGATCAATGGTT 60
Query 61 CAAATCCCTTCACTGAATTCAACGGTTTTTTACTTCGCTCAAGGCCACACAGAGCACGCT 120
||||||||||| ||||||||||||||||||||||||| ||||| ||||||||||| |||
Sbjct 61 CAAATCCCTTCTGTGAATTCAACGGTTTTTTACTTCGCCCAAGGTCACACAGAGCATGCT 120
Query 121 CACGCGCCTCCTGATTTTCACGCGCCGCGCGTTCCACCTCTTATCCTCTGTCGTGTCGTC 180
||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||
Sbjct 121 CACGCGCCTCCTGATTTCCACGCGCCGCGCGTTCCACCGCTTATCCTCTGTCGTGTCGTC 180
Query 181 TCCGTGAAGTTCCTCGCCGACGCTGAAACAGACGAAGTTTTTGCTAAAATTACGCTTTTG 240
|| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 181 TCTGTGAAGTTCCTCGCCGACGCTGAAACAGACGAAGTTTTCGCTAAAATTACGCTTTTG 240
Query 241 CCACTTCCGGGAAACGACTTGGATCTAGAAAACGACGCCGTTTTGGGTCTAACTCCTCCT 300
||||| ||||||||||||||||||||||| |||||||||||||||||||| ||||||||
Sbjct 241 CCACTACCGGGAAACGACTTGGATCTAGAGAACGACGCCGTTTTGGGTCTGACTCCTCCG 300
Query 301 TCTTCTGACG-----G-TAACGGTAACGGTAAAGAGAAACCGGCGTCTTTCGCTAAAACG 354
|||||||||| | ||||||||||||||| ||||||||||||||||| |||||||||
Sbjct 301 TCTTCTGACGTTAACGTTAACGGTAACGGTAACGAGAAACCGGCGTCTTTTGCTAAAACG 360
Query 355 TTAACGCAGTCTGACGCTAATAACGGCGGTGGTTTCTCCGTTCCACGTTATTGCGCCGAG 414
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct 361 TTAACGCAGTCTGACGCTAATAACGGCGGTGGTTTCTCTGTTCCACGTTATTGCGCTGAG 420
Query 415 ACGATTTTCCCGCGGCTTGATTACTCGGCGGAGCCACCGGTTCAAACCGTGATTGCTAAA 474
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 421 ACGATTTTCCCGCGGCTTGATTACACGGCGGAGCCACCGGTTCAAACCGTGATTGCTAAA 480
Query 475 GACATCCACGGCGAGACTTGGAAATTCCGGCATATTTACAGAGGAACACCTCGCCGTCAT 534
|| || ||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 481 GATATTCACGGCGAGACTTGGAAATTCCGGCATATTTACAGAGGAACGCCTCGCCGTCAT 540
Query 535 CTCCTAACCACCGGTTGGAGCACTTTCGTTAACCAGAAGAAACTAATCGCCGGAGACTCA 594
||| ||||||||||||||||||||||||||||||| ||||||||||||||||| || |||
Sbjct 541 CTCTTAACCACCGGTTGGAGCACTTTCGTTAACCAAAAGAAACTAATCGCCGGGGATTCA 600
Query 595 ATCGTCTTCCTCCGTTCTGAATCCGGTGACCTCTGCGTCGGAATCCGCCGCGCTAAACGC 654
||||| |||||||||||||||||||||||||||||||| |||||||| || |||||||||
Sbjct 601 ATCGTTTTCCTCCGTTCTGAATCCGGTGACCTCTGCGTTGGAATCCGTCGTGCTAAACGC 660
Query 655 GGCGGTCTCGGATCTAAC--GC-AGGATCCGACAATCCTTACCCTGGATTCTCCGGTTTC 711
|| ||||||||||||| | || |||||||||||||||||||||||||||||||||||||
Sbjct 661 GGTGGTCTCGGATCTACCGGGCTAGGATCCGACAATCCTTACCCTGGATTCTCCGGTTTC 720
Query 712 CTCCGTGACGACGAGTCAACAACAACAACATCGAAGCTAATGATGATGAAACGCAACGGA 771
||||||||||| || |||| |||||||||||||||| ||||||||||||||||||||
Sbjct 721 CTCCGTGACGATGA---AACATCAACAACATCGAAGCTTATGATGATGAAACGCAACGG- 776
Query 772 AACAACGACGGAAACGCCGCGGCTACAGGGAGGGTTAGAGTAGAAGCAGTAGCGGAAGCG 831
| |||||||||||||| |||||| ||||||||||||||| |||||||| |||||||||
Sbjct 777 -A-AACGACGGAAACGCGGCGGCTGGAGGGAGGGTTAGAGTGGAAGCAGTGGCGGAAGCG 834
Query 832 GTGGCGCGTGCAGCGTGTGGACAAGCGTTTGAGGTTGTTTATTATCCACGCGCTAGTACA 891
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 835 GTGGCGCGTGCAGCGTGTGGACAAGCGTTTGAGGTTGTTTATTATCCACGCGCTAGTACA 894
Query 892 CCGGAGTTTTGCGTAAAAGCAGCTGATGTTAGATCAGCAATGAGGATAAGATGGTGTAGT 951
|||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 895 CCGGAGTTTTGCGTTAAAGCAGCTGATGTGAGATCAGCAATGAGGATAAGATGGTGTAGT 954
Query 952 GGTATGCGTTTTAAAATGGCGTTTGAAACAGAGGATTCTTCTAGAATCAGTTGGTTTATG 1011
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 955 GGTATGCGTTTTAAAATGGCGTTTGAAACAGAGGATTCTTCAAGAATCAGTTGGTTTATG 1014
Query 1012 GGTACTGTCTCCGCCGTTCAAGTCGCTGATCCAATTCGTTGGCCTAATTCACCATGGCGT 1071
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1015 GGTACTGTCTCCGCCGTTCAAGTCGCTGATCCTATTCGTTGGCCTAATTCACCATGGCGT 1074
Query 1072 CTCCTTCAGGTAGCTTGGGACGAACCGGATTTGTTACAAAACGTTAAGCGGGTTAGTCCG 1131
|||||||||||||| |||||||||||||||||||| ||||| ||||||||||| ||||||
Sbjct 1075 CTCCTTCAGGTAGCGTGGGACGAACCGGATTTGTTGCAAAATGTTAAGCGGGTAAGTCCG 1134
Query 1132 TGGTTAGTCGAATTGGTATCGAACATGCCTACAATACATTTATCTCCATTCTCTCCGAGG 1191
|||||||||||||||||||||||||||||| |||| ||||||||||| ||||||||||||
Sbjct 1135 TGGTTAGTCGAATTGGTATCGAACATGCCTGCAATCCATTTATCTCCTTTCTCTCCGAGG 1194
Query 1192 AAGAAGATTAGGATTCCGCAGCCATTTGAGTTTCCATTCCACGGTACTAAATTCCCGATT 1251
||||||||| | || |||||||| ||||| ||||| ||| ||||||| ||||||||||||
Sbjct 1195 AAGAAGATTCGAATACCGCAGCCTTTTGAATTTCCTTTCGACGGTACCAAATTCCCGATT 1254
Query 1252 TTCTCCCCGGGATTCGCCAACAATGGCGGTGGCGAGTCCATGTGTTATCTGTCAAACGAC 1311
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1255 TTCTCCCCGGGATTCGCCAACAATGGCGGTGGCGAATCCATGTGTTATCTGTCAAACGAC 1314
Query 1312 AACAATAATGCTCCTGCAGGAATACAGGGAGCCAGGCAAGCTCAACAACTCTTCGGATCA 1371
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1315 AACAATAATGCTCCTGCAGGGATACAGGGAGCCAGGCAAGCTCAACAACTCTTCGGATCA 1374
Query 1372 CCATCTCCGTCTTTGTTGTCTGATCTCAATCTTAGTAGTTACACCGGTAACAACAAGTTA 1431
|||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||
Sbjct 1375 CCATCTCCGTCTTTGTTGTCTGATCTCAATCTTAGTAGTTACTCCGGTAACAA---GTTA 1431
Query 1432 CATTCTCCGGCGATGTTTCTATC-GAGTTTCAACCCGAGGCATCATCATTAT--CA--G- 1485
|| ||||||||||||||||| || | |||| ||||||||||||||| || || || |
Sbjct 1432 CAATCTCCGGCGATGTTTCTGTCCG-GTTTTAACCCGAGGCATCATTATGATAACATTGT 1490
Query 1486 G-CT----AG----GG-ATAGTGAGAATAGTAATAACATTTCGTGTTCTTTAACTATGGG 1535
| || || || ||| |||||||||||||||||||||||| |||||||| |||||
Sbjct 1491 GTCTCGTCAGACTAGGGATACTGAGAATAGTAATAACATTTCGTGCTCTTTAACGATGGG 1550
Query 1536 GAATCCTGCTATGGTTCAGGATAAGAAGAAGTCTGTTGGTTCGGTTAAGACTCATCAGTT 1595
||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||
Sbjct 1551 GAATCCTGCTATGGTTCAGGACAAGAAGAAGTCTGGTGGTTCGGTTAAGACTCATCAGTT 1610
Query 1596 CGTGTTGTTCGGTCAACCGATTTTAACCGAACAGCAAGTTATGAACCGAAAACGGTTTTT 1655
| |||||||||| ||||| |||||||||||||| |||||||||||||||||||||| |||
Sbjct 1611 CTTGTTGTTCGGCCAACCTATTTTAACCGAACAACAAGTTATGAACCGAAAACGGTCTTT 1670
Query 1656 GGAAGAAGAGGCGGAAGCGGAGGAGGAGAAAGGTTTAGTGGCTCGTGGGTTAACATGGAA 1715
||||||||||||||||||| |||||||||||||||||| ||||||||| |||||||||||
Sbjct 1671 GGAAGAAGAGGCGGAAGCGCAGGAGGAGAAAGGTTTAGCGGCTCGTGGATTAACATGGAA 1730
Query 1716 TTATAGTTTGCAAGGACTTGAGACGGGTCATTGTAAAGTTTTCATGGAATCTGAGGATGT 1775
||| |||| || |||||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct 1731 TTACGGTTTTCAGGGACTTGAAACGGGTCATTGCAAAGTTTTCATGGAATCTGAGGATGT 1790
Query 1776 TGGACGCACACTCGATCTCTCGGTTATTGGCTCGTACCAAGAATTGTACCGGAAATTGGC 1835
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1791 TGGACGCACACTCGATCTCTCGGTTATTGGCTCGTACCAAGAATTGTACCGGAAATTGGC 1850
Query 1836 TGAGATGTTTCATATAGAAGAGAGGTCGGATTTGTTGACTCATGTTGTGTACCGGGATGC 1895
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1851 TGAGATGTTTCATATAGAAGAGAGGTCGGATTTGTTGACTCATGTTGTGTACCGGGACGC 1910
Query 1896 AAATGGTGTTATCAAACGTATTGGAGACGAACCTTTCAGTGATTTCATGAAAGCAACTAA 1955
|||||||| ||||||||| ||||||||||||||||||||||||||||||||| |||| ||
Sbjct 1911 AAATGGTGCTATCAAACGCATTGGAGACGAACCTTTCAGTGATTTCATGAAATCAAC-AA 1969
Query 1956 A-CGGCTAACAATCAAGATGGATATTGGTGGCGACAACGTGAGAAAGACGTGGATAACCG 2014
| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1970 AGCGGCTAACAATCAAGATGGATATTGGTGGCGACAACGTGAGGAAGACGTGGATAACCG 2029
Query 2015 GAATCAGGACTGGTGAAAATGGTATAGACGCTTCTACGAAGACTGGTCCGCTCAGCATCT 2074
|||||||||||||||||||||||||||||||| | | ||||| ||||||||||||||||
Sbjct 2030 GAATCAGGACTGGTGAAAATGGTATAGACGCTAC-A--AAGACCGGTCCGCTCAGCATCT 2086
Query 2075 TCGCTTGAA 2083
|||||||||
Sbjct 2087 TCGCTTGAA 2095
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 85284058555
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5