BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G28355.1
Length=495
Score E
Sequences producing significant alignments: (Bits) Value
Ahg933186 jgi|Araly1|933186|scaffold_401174.1 409 1e-113
> Ahg933186 jgi|Araly1|933186|scaffold_401174.1
Length=275
Score = 409 bits (221), Expect = 1e-113
Identities = 259/276 (94%), Gaps = 8/276 (3%)
Strand=Plus/Plus
Query 53 TTCATTTATATCATCTATGATGAAGAAACTCATTCAACTCTCGTTCACTGTTATGATTAT 112
||||||||||||||| ||||||||||||| ||||||||||||||| ||||||||||||||
Sbjct 6 TTCATTTATATCATCCATGATGAAGAAACCCATTCAACTCTCGTTAACTGTTATGATTAT 65
Query 113 CTTCACCATTCTTG-TGCTAGGAGTGGTGGCAAATGAGGGGCTAGGAAAACCaaaaaaaC 171
|||||||||||||| | ||||||||||||||||||||||||||||||||||| |||||
Sbjct 66 CTTCACCATTCTTGCT-CTAGGAGTGGTGGCAAATGAGGGGCTAGGAAAACC---AAAAC 121
Query 172 AATGTAATGAGATTCTAAAGCAATCCAACTGTGTTGCTGCAGAGTGTGACTCTATGTGTG 231
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 122 AATGTCATGAGATTCTAAAGCAATCCAACTGTGTTGCTGCAGAGTGTGACTCTATGTGTG 181
Query 232 TGAAGAAGAGGGGGAAAGGAGCCGGT-TACTGCTCTCCTTCTAAAAAGTGTTACTGCTAT 290
|||||||||||||||||||||||||| | ||| || ||||||| |||||||||||||||
Sbjct 182 TGAAGAAGAGGGGGAAAGGAGCCGGTGTT-TGCACTACTTCTAAGAAGTGTTACTGCTAT 240
Query 291 TATCATTGCCCTTAACGATTTTATTATTTACAATAA 326
||||||||||||||| |||||| |||||||||||||
Sbjct 241 TATCATTGCCCTTAATGATTTT-TTATTTACAATAA 275
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 17971282419
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5