BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G28360.1
Length=2746
Score E
Sequences producing significant alignments: (Bits) Value
Ahg481669 jgi|Araly1|481669|fgenesh2_kg.4__729__AT2G28360.1 2582 0.0
Ahg919535 jgi|Araly1|919535|scaffold_100816.1 1764 0.0
> Ahg481669 jgi|Araly1|481669|fgenesh2_kg.4__729__AT2G28360.1
Length=2439
Score = 2582 bits (1398), Expect = 0.0
Identities = 1524/1586 (96%), Gaps = 4/1586 (0%)
Strand=Plus/Plus
Query 230 GTGGAGTCGATACTAGACAAAGACAGTTTCACATTGGAAGAGCTTCTTGACGAGGAAGAG 289
|||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||
Sbjct 148 GTGGAGTCGATACTAGACAAAGACAGTTTCACTTTGGAAGAGCTTCTTGATGAGGAAGAG 207
Query 290 ATTATTCAAGAATGCAAAGCTTTGAATAGCCGACTCATTAATTTTCTAAGGGAAAAAACT 349
|||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct 208 ATTATTCAAGAATGCAAAGCTTTGAATAGCCGACTCATAAATTTTCTAAGGGATAAAACT 267
Query 350 CAAGTGGAGAAACTATTGCGGTATGTTGTTGAAGAGCCTGAGGACGATGCTGATAGCAAA 409
|||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 268 CAAGTGGACCAACTTTTGCGGTATGTTGTTGAAGAGCCTGAGGACGATGCTGATAGCAAA 327
Query 410 CGTGCTTTCAAGTTTCCATTCATCTCTTGCGAGATATTCACATGTGAGATTGATGTTATT 469
|||||||||||||||||||| |||||||| |||||||| |||||||||||||||||||||
Sbjct 328 CGTGCTTTCAAGTTTCCATTTATCTCTTGTGAGATATTTACATGTGAGATTGATGTTATT 387
Query 470 CTTAAGACTTTGGTGGAGGATGAGAAGCTGATGGATTTGCTATTTGGATTTTTGGAACCG 529
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 388 CTTAAGACTTTGGTGGAGGATGAGAAGCTGATGGATTTGCTGTTTGGATTTTTGGAACCG 447
Query 530 AATCGTCCTCATAGTGCGTTGCTGGCAGGCTACTTCGGCAAGGTTGTCATATGTCTCATG 589
|||||||||||||||||||||||||||||||| ||||| ||||||||||||||| | |||
Sbjct 448 AATCGTCCTCATAGTGCGTTGCTGGCAGGCTATTTCGGAAAGGTTGTCATATGTTTGATG 507
Query 590 ATCCGAAAGACTTCAGCACTTATGAGCTATATAAAAGGGCATGGAAATGTGTTTAGCCAG 649
||| |||||||| |||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 508 ATCAGAAAGACTGCAGCACTTATGAAATATATAAAAGGGCATGGAAATGTGTTTAGCCAG 567
Query 650 TTAGTTGATTTAATTGGAATAACATCCATAATGGAGGTTTTGGTTCGCTTGGTTGGAGCT 709
|| |||||||||||||||||||||||||| ||||||||||| |||||||||||||| |||
Sbjct 568 TTGGTTGATTTAATTGGAATAACATCCATCATGGAGGTTTTAGTTCGCTTGGTTGGGGCT 627
Query 710 GATGATCATGTCTATCCCAATTTTCCGGATGTGATGCGATACTTGGCTGATAGCGATTTA 769
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 628 GATGATCATGTCTATCCCAATTTTCCGGATGTGATGCGATACTTGGCTGATAGTGATTTA 687
Query 770 CTTGAAATGATCGTCGACAAATTAAATC-CATCTAGTCCTCCTGAGGTTCAGGCAAACGC 828
|||||||||||||| |||||| |||| | |||||||||||||||||||||||||||||||
Sbjct 688 CTTGAAATGATCGTGGACAAACTAAA-CTCATCTAGTCCTCCTGAGGTTCAGGCAAACGC 746
Query 829 AGCAGAAACATTATGTGCAATTACTCGAAATGCACCTTCAGCTCTAGCTACAAAACTCTC 888
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 747 AGCAGAAACATTATGTGCAATTACTCGAAATGCACCTTCAGCTCTAGCTACAAAACTCTC 806
Query 889 TAGCCCTGGCTTCGTTTCTAGGATATTTGGTCATGCTATAGAAGATTCTCATTCAAAATC 948
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 807 TAGCCCTGGCTTCGTTTCTAGGATATTTGGTCATGCTATAGAAGATTCACATTCAAAATC 866
Query 949 TGGCCTAGTCCATTCACTTACTGTATGTATCTCTCTGTTAGATCCGAGGAGATCTGGTGC 1008
||||||||| ||||||||||||||||||||||||||||||||||| |||||||||| ||
Sbjct 867 TGGCCTAGTTCATTCACTTACTGTATGTATCTCTCTGTTAGATCCAAGGAGATCTGCTGT 926
Query 1009 TTCATCGCCTTTCTTCAATTCTTATAGAGGTCAAAATATGTTTGAGTCTCCTGTCCCAGT 1068
||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||
Sbjct 927 TTCATCGCCTTTCTTCAATTCTTTTAGAGGTCAACATATGTTTGAGTCTCCTGTCCCAGT 986
Query 1069 GACCCAGGAGACTATTGGTGCCATGCTACCTAAACTCGGTGACATGCTTGTGCTTCTCAG 1128
|| ||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||
Sbjct 987 GAGCCAGGAGACTATTGGTGCCATGCTACCAAAACTCGGTGACATGCTTGTGCTGCTCAG 1046
Query 1129 TGTAACGTCTGACAGCAAAGTCTTACCTACAACATATGGAGAGCTGAGGCCGCCTCTTGG 1188
|||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1047 TGTAGCGTCTGACAGCAAAGTCTTACCTACAACGTATGGAGAGCTGAGGCCGCCTCTTGG 1106
Query 1189 AAAGCATCGCTTGAAGATTGTAGAATTCATTGCGGTTCTGTTAAAATCTGGAAATGAAGC 1248
||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||
Sbjct 1107 AAAGCATCGCTTGAAGATTGTAGAATTTATTGCGGTGCTGTTAAAATCTGGAAATGAAGC 1166
Query 1249 TGCTGGAACTGAATTAGCAATCTCTGGAACAATTAAAAGGATCCTTGAACTATTTTTTGA 1308
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||
Sbjct 1167 TGCTGGAACTGAATTAGCAAGCTCTGGAACAATTAAAAGGATCCTTGAACTATTTTTCGA 1226
Query 1309 GTACCCATACAATAATGCTCTCCATCACCAAGTGGAGAGTATAATACTTTCTTGTTTGGA 1368
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1227 GTACCCATACAATAATGCTCTCCATCACCAAGTGGAGAGTATAATACTTTCTTGTTTGGA 1286
Query 1369 AAATAAGAGCGAAATTATGGTTAACCATATCCTTCAAGATTGCAATCTGATTAGCAAAAT 1428
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1287 AAATAAGAGCGAAATTATGGTTAACCATATCCTTCAAGAATGCAATCTGATTAGCAAAAT 1346
Query 1429 TCTTTCATCAGACAAAGACTCGGCTCTTTCTGGCGATAACCTGCCTACCGTAGTTGCCAC 1488
||||||||||||||| ||||||| |||||||||||||||| |||||||||||||||||||
Sbjct 1347 TCTTTCATCAGACAAGGACTCGGTTCTTTCTGGCGATAACTTGCCTACCGTAGTTGCCAC 1406
Query 1489 TGGGAAAAAACCACCACGGGTTGGATATGTTGGACATATCACAAGACTGTGGAATAAACT 1548
||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1407 TGGGAAAAAACCACCGCGGGTTGGATATGTTGGACATATCACAAGACTATGGAATAAACT 1466
Query 1549 TGTCCAGTTGAGTGATAGCAAT-GCCCTGATAAAGACATCGCTTCAGGAAAACAGTGAAT 1607
|||||||||||||||||||||| ||| | |||||||||||||||||||||||| ||||||
Sbjct 1467 TGTCCAGTTGAGTGATAGCAATAGCC-TCATAAAGACATCGCTTCAGGAAAACGGTGAAT 1525
Query 1608 GGAACGAGTGGCAAAGTAGTGTTCTGAAGGAGCGCAATACTGTTGAGAATGTGTACAGAT 1667
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1526 GGAACGAGTGGCAAAGTAGTGTTCTAAAGGAGCGCAATACTGTTGAGAATGTGTACAGAT 1585
Query 1668 GGGCATGCGGGCGTCCTACTACACTGCAAGATAGAACAAGGGATAGTGACGAAGAAGACA 1727
|||||||||||||||| ||||||||||||||||||||||||||||| ||||| |||||||
Sbjct 1586 GGGCATGCGGGCGTCCAACTACACTGCAAGATAGAACAAGGGATAGCGACGAGGAAGACA 1645
Query 1728 GGGACTACGATGTTGCAGCTTTGGCGAACAATTTGAACCAAGCATTTAATTACAGAATCT 1787
|||| |||||||||||||||||||||||||||||||||||||| |||||||||||||| |
Sbjct 1646 GGGATTACGATGTTGCAGCTTTGGCGAACAATTTGAACCAAGCGTTTAATTACAGAATGT 1705
Query 1788 ATGGAAATGAGGATAATGAAGAGGAT 1813
||||||| ||||||||||||||||||
Sbjct 1706 ATGGAAACGAGGATAATGAAGAGGAT 1731
Score = 1011 bits (547), Expect = 0.0
Identities = 657/711 (92%), Gaps = 3/711 (0%)
Strand=Plus/Plus
Query 1850 GATTCATACTTTGACGATGAATCTGCTGAAGTAGTAATTTCATCCTTGAGACTCGGAGAT 1909
||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1729 GATGCATACTTTGACGATGAATCTGCTGAAGTAGTGATTTCATCCTTGAGACTCGGAGAC 1788
Query 1910 GACCAAGGGAGTTTGCTCACAAATTCCGACTGGTTCACATTCCAAGATGACAGATTCAGC 1969
|||||||| || |||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1789 GACCAAGGAAGCTTGCTCACAAATTCGGACTGGTTCACATTCCAAGATGACAGATTCAGC 1848
Query 1970 AACCCGACCTCTGACACGATGATCGAGGACGTGAACATGAATGAAACCACAAATGCTAAT 2029
||| || |||||||||||| ||| || ||||||||||||||||||| | |||||| |||
Sbjct 1849 AACACGGCCTCTGACACGACGATTGAAGACGTGAACATGAATGAAAACTCAAATGATAAC 1908
Query 2030 GATAGCAGCAGCAGTGATGATGAACTTCTGGTTGAAGAAGAAGAAGACGATGATCTAACA 2089
|||||||||||||||| |||||||||||||||| ||||||| ||||||||||||||||
Sbjct 1909 AATAGCAGCAGCAGTGACGATGAACTTCTGGTTGGAGAAGAAAAAGACGATGATCTAACC 1968
Query 2090 GAGAAATCGAAGAACATCTCTCCCAGCAATTTATCAACATCAGACTCAACAAGCATCAAC 2149
|||||| || ||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1969 GAGAAACCGGAGAACATATCTCCCAGCAATTTATCAACATCAGACTCAACAAGCATCAAT 2028
Query 2150 ATATCATCAGAGAACAACGATGAACCATCTGACATGCAAGTCACTAGCTCCAGTCTGAAC 2209
| |||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||
Sbjct 2029 ACATCATCAGAGAACAACGATGAACCATCTGAAATGCAAATCACTAGCTCCAGTCTGAAC 2088
Query 2210 CCATTCATTGACGTACCAATGCTTGATGTCAAACCCGAACCGGTTATTCCAAACAGTTCC 2269
|||||||| || ||||||||||| ||||||||| |||||| ||||||||||||| |||||
Sbjct 2089 CCATTCATCGATGTACCAATGCTCGATGTCAAATCCGAACTGGTTATTCCAAACGGTTCC 2148
Query 2270 CCAACATCATCTGAAAGCAGCAGCTTGGGGCATAAATCGCCTTCGTCTCCTGCCGTGCGA 2329
||| ||||||||| ||||||| ||| ||||| ||||||||||| |||||||||||||||
Sbjct 2149 CCACCATCATCTGGAAGCAGCGGCTCAGGGCACAAATCGCCTTCTTCTCCTGCCGTGCGA 2208
Query 2330 GCACTCTTTGAAGAGGATGTGGAGTTTGTGGGAGTAGAACCAGAAGGAACAGAGAAAGCA 2389
||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct 2209 GCACTCTTTGAAGAGGATGTGGAGTTTGTAGGAGTGGAACCAGAAGGAACAGAGAAAGCA 2268
Query 2390 ATGGATCAAGCTTTAAAAGAAGGGATAGTCGGTGAAGCTGGACCGTTGAAGCGTAATATT 2449
||||| ||||| ||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 2269 ATGGAACAAGCCTTAAAAGAAGGGATAGTCGGTGAAGCTGGACCGTTGAAGCGGAATATC 2328
Query 2450 GTTCAGAAAGTTCCGGAAAACGAAAACCA---GGCAGAGAATTCGGGTGTGACAGAATTC 2506
||||| ||||||||||||||||||||||| || ||||||||| ||||||||||| |||
Sbjct 2329 GTTCAAAAAGTTCCGGAAAACGAAAACCACCAGGAAGAGAATTCAGGTGTGACAGAGTTC 2388
Query 2507 AACGATGCAAATTTCTGGAGGGTTGATCAAGAAGTTACAGTTTTGGAGTAA 2557
||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 2389 AACGATGGAAATTTCTGGAGGGTTGATCAAGAAGTTACAGTTTTGGAGTAA 2439
Score = 76.8 bits (41), Expect = 8e-13
Identities = 41/41 (100%), Gaps = 0/41 (0%)
Strand=Plus/Plus
Query 191 ATGTTCTGGAAGCTAGCCTCTCTCTCTGCATCGTCTCCTGT 231
|||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGTTCTGGAAGCTAGCCTCTCTCTCTGCATCGTCTCCTGT 41
> Ahg919535 jgi|Araly1|919535|scaffold_100816.1
Length=2461
Score = 1764 bits (955), Expect = 0.0
Identities = 1628/1947 (84%), Gaps = 69/1947 (4%)
Strand=Plus/Plus
Query 186 CCACCATGTTCTGGAAGCT-AGCCTCTCTCTCTGCATCGTCTCCTGTGGAGTCGATACTA 244
|||||||||| |||||||| | | |||||||||||||| |||||||||||| | ||| ||
Sbjct 17 CCACCATGTTTTGGAAGCTCA-CATCTCTCTCTGCATCATCTCCTGTGGAGACAATATTA 75
Query 245 GACAAAGACAGTTTCACATTGGAAGAGCTTCTTGACGAGGAAGAGATTATTCAAGAATGC 304
|||||||| | |||||| ||||||||||||||||| ||||||||||||||||||||||||
Sbjct 76 GACAAAGAAAATTTCACCTTGGAAGAGCTTCTTGATGAGGAAGAGATTATTCAAGAATGC 135
Query 305 AAAGCTTTGAATAGCCGACTCATTAATTTTCTAAGGGAAAAAACTCAAGTGGAGAAACTA 364
|| |||||||||||||| ||||| || ||||||||||| ||| ||||||||||| || ||
Sbjct 136 AAGGCTTTGAATAGCCGGCTCATAAACTTTCTAAGGGAGAAAGCTCAAGTGGAGCAATTA 195
Query 365 TTGCGGTATGTTGTTGAAGAGCCT-GAGGACGATGCTGATAGCAAACGTGCTTTCAAGTT 423
|||||||| |||||||||| ||| | | ||||||||||| |||||||||||||||||
Sbjct 196 TTGCGGTACATTGTTGAAGAACCTCCA-CAGGATGCTGATAGTAAACGTGCTTTCAAGTT 254
Query 424 TCCATTCATCTCTTGCGAGATATTCACATGTGAGATTGATGTTATTCTTAAGACTTTGGT 483
||||||||||||||| || ||||| |||||||| |||||||||||||| || ||||||||
Sbjct 255 TCCATTCATCTCTTGTGAAATATTTACATGTGAAATTGATGTTATTCTAAAAACTTTGGT 314
Query 484 GGAGGATG-AGAAGCTGATGGATTTGCTATTTGGATTTTTGGAACCGAATCGTCCTCATA 542
||||| | || |||||||||| ||||| ||| ||| ||||||| |||||||||||||
Sbjct 315 GGAGGCCGAAG-AGCTGATGGACTTGCTTTTTTCCTTTCTGGAACCAAATCGTCCTCATA 373
Query 543 GTGCGTTGCTGGCAGGCTACTTCGGCAAGGTTGTCATATGTCTCATGATCCGAAAGACTT 602
|||| |||||||||||||| ||| ||||||||||||| || || |||||| |||| |||
Sbjct 374 GTGCATTGCTGGCAGGCTATTTCAGCAAGGTTGTCATTTGCCTTATGATCAGAAAAACTG 433
Query 603 CAGCACTTATGAGCTATATAAAAGGGCATGGAAATGTGTTT-AGCCAGTTAGTTGATTTA 661
|||| ||||||| ||| ||||||||||| |||||| ||| ||||||| ||||||||
Sbjct 434 CAGCGCTTATGAATTATGTAAAAGGGCATCAAAATGT-TTTCTGCCAGTTGGTTGATTTG 492
Query 662 ATTGGAATAACATCCATAATGGAGGTTTTGGTTCGCTTGGTTGGAGCTGATGATCATGTC 721
||||| ||||||||||| |||||||||||||||||||||||||| |||||||| ||||||
Sbjct 493 ATTGGGATAACATCCATCATGGAGGTTTTGGTTCGCTTGGTTGGGGCTGATGACCATGTC 552
Query 722 TATCCCAATTTTCCGGATGTGATGCGATACTTGGCTGATAGCGATTTACTTGAAATGATC 781
|||||||| |||| ||||||||||| || |||||||||||| |||||||||||||||||
Sbjct 553 TATCCCAACTTTCTGGATGTGATGCAATGGTTGGCTGATAGCAATTTACTTGAAATGATC 612
Query 782 GTCGACAAA-TTAAATCCATCTAGTCCTCCTGAGGTTCAGGCAAACGCAGCAGAAACATT 840
|| |||||| ||||| |||||||||||||| |||||||||||||| ||||||||||||||
Sbjct 613 GTGGACAAACTTAAA-CCATCTAGTCCTCCAGAGGTTCAGGCAAATGCAGCAGAAACATT 671
Query 841 ATGTGCAATTACTCGAAATGCACCTTCAGCTCTAGCTACAAAACTCTCTAGCCCTGGCTT 900
|||||||||| |||| |||||||| |||||| ||||||| | ||||||||||||||||
Sbjct 672 ATGTGCAATTTCTCGGAATGCACCATCAGCTTTAGCTACGCAGCTCTCTAGCCCTGGCTA 731
Query 901 CGTTTCTAGGATATTTGGTCATGCTATAGAAGATTCTCATTCAAAATCTGGCCTAGTCCA 960
|||| ||| |||||||||||||||| | ||||| || ||||||||||| | ||||| ||
Sbjct 732 CGTTGCTAAGATATTTGGTCATGCTCTTGAAGACTCGCATTCAAAATCCAGTCTAGTTCA 791
Query 961 TTCACTTACTGTATGTATCTCTCTGTTAGATCCGAGGAGATCTGGTGCTTCATCGCCTTT 1020
||||||| | ||||| | ||||||| | |||||||||||||||| || |||||| || |
Sbjct 792 TTCACTTTCAGTATGCACCTCTCTGCTGGATCCGAGGAGATCTGCTGTTTCATCTTCTAT 851
Query 1021 CTTCAATTCTTATAGAGGTCAAAATATGTTTGAGTCTCCTGTCCCAGTGACCCAGGAGAC 1080
||||||||||||||||||||| ||||||| ||||||||||||||||| ||| ||| ||
Sbjct 852 GTTCAATTCTTATAGAGGTCAACATATGTTCGAGTCTCCTGTCCCAGTTTCCCCGGAAAC 911
Query 1081 TATTGGTGCCATGCTACCTAAACTCGGTGACATGCTTGTGCTTCTCAGTGTAACGTCTGA 1140
||||||||||||||| || |||||| |||| ||||| ||||||||| |||| | || ||
Sbjct 912 TATTGGTGCCATGCTGCCCAAACTCAATGACTTGCTTATGCTTCTCACTGTAGCATCCGA 971
Query 1141 CAGCAAAGTCTTACCTACAACATATGGAGAGCTGAGGCCGCCTCTTGGAAAGCATCGCT- 1199
||||| ||| || |||||||||||||| || |||||||| ||||| ||||||||||| |
Sbjct 972 CAGCACAGTATTGCCTACAACATATGGTGAACTGAGGCCTCCTCTCGGAAAGCATCG-TC 1030
Query 1200 TGAAGATTGTAGAATTCATTGCGGTTCTGTT-AAAATCTGGAAATGAAGCTGCTGGAACT 1258
| |||||||| || |||||||| ||| |||| |||| |||||| ||||||||| ||
Sbjct 1031 TAAAGATTGTGGAGTTCATTGCAGTTTTGTTGAAAA-CTGGAAGTGAAGCTGCACAAAAG 1089
Query 1259 GAATTAG-CAATCTCTGGAACAATTAAAAGGATCCTTGAACTATTTTTTGAGTACCCATA 1317
||||||| | | || |||||||| ||||||| |||||| || ||||| |||||||| ||
Sbjct 1090 GAATTAGTTAGT-TCAGGAACAATCAAAAGGACCCTTGATCTGTTTTTCGAGTACCCGTA 1148
Query 1318 CAATAATGCTCTCCATCACCAAGTGGAGAGTATAATACTTTCTTGTTTGGAAAATAAGAG 1377
|||||||||||| ||||| ||||||||||||||||||||||||||||||||||| |||||
Sbjct 1149 CAATAATGCTCTGCATCATCAAGTGGAGAGTATAATACTTTCTTGTTTGGAAAACAAGAG 1208
Query 1378 CGAAATT-ATGGTTAACCATATCCTTCAAGATTGCAATCTGATTAGCAAAATTCTT-TCA 1435
||| || |||||||||||||| |||| ||| ||| |||||||| ||||| ||| | ||
Sbjct 1209 CGAT-TTGATGGTTAACCATATTCTTCGAGACTGCGATCTGATTGGCAAA-TTCCTCTCG 1266
Query 1436 TCAGACAAAGACTCGG-C-TCTT--TCT--GGCGATAACCTGCCTACCGTAGTTGCCACT 1489
|||||| ||||| | ||| ||| || |||| || ||| || |||| |||| |
Sbjct 1267 TCAGACCGGGACTCAAACCTCTCAGTCTCAGGTGATAGCCAGCCCACTGTAGCTGCCTCC 1326
Query 1490 GGGAAAAAACCACCACGGGTTGGATATGTTGGACATATCACAAGACTGTGGAATAAACTT 1549
||||||| || || || || || |||||||| |||||||||||| | | |||||| ||
Sbjct 1327 GGGAAAACCCCCCCTCGCGTCGGGTATGTTGGGCATATCACAAGAATATCAAATAAAATT 1386
Query 1550 G-TCCAGTTGAGTGATAGCAATGCCCTGATAAAGACAT-CGCTTCAGGAAAACAGTGAAT 1607
| || |||||||| | ||||||| || ||||||| ||| | |||||||||||||| ||||
Sbjct 1387 GGTC-AGTTGAGTAACAGCAATGGCCAGATAAAGGCATAC-CTTCAGGAAAACAGCGAAT 1444
Query 1608 GGAACGAGTGGCAAAGTAGTGTTCTGAAGGAGCGCAATACTGTTGAGAATGTGTACAGAT 1667
|||| ||||||||| ||||||||||| |||||||||| || ||||| ||||| ||||||
Sbjct 1445 GGAATGAGTGGCAAGGTAGTGTTCTGCAGGAGCGCAACACGGTTGAAAATGTCAACAGAT 1504
Query 1668 GGGCATGCGGGCGTCCTACTACACTGCAAGATAGAACAAGGGATAGTGACGAAGAAGACA 1727
||| ||||||||| || ||||| || |||||||| ||||| ||||| || || |||||||
Sbjct 1505 GGGGATGCGGGCGCCCGACTACCCTACAAGATAGGACAAGAGATAGCGATGAGGAAGACA 1564
Query 1728 GGGACTACGATGTTGCAGCTTTGGCGAACAATTTGAA-CCAAGCATTTA-ATTACAGAAT 1785
|||| ||||||||||||||| |||| || || || || ||||||||||| || ||| |||
Sbjct 1565 GGGATTACGATGTTGCAGCTCTGGCCAATAACTT-AAGCCAAGCATTTAGAT-ACAAAAT 1622
Query 1786 CTATGGAAATGAGGATAATGAAGAGGATCAGAATGCTCTCAATGCTCTCGATAGAGACGA 1845
||||||||| ||||| ||||||||||| || ||||| | | || |||||||||||
Sbjct 1623 CTATGGAAACGAGGACAATGAAGAGGACCAAAATGC-C-C--TG-----GATAGAGACGA 1673
Query 1846 T-AGTGAT-TCATACTTTGACGATGAATCTGCTGAAGTAGTAATTTCATCCTTGAGACTC 1903
| | |||| | ||||| ||||||||||| ||||||||||||||||||||||| |||||
Sbjct 1674 TGA-TGATGTT-TACTTCGACGATGAATCCGCTGAAGTAGTAATTTCATCCTTAAGACTT 1731
Query 1904 GGAGATGACCAAGGGAGTTTGCTCACAAATTCCGACT-GGTTCACATTCCAAGATGACAG 1962
|| ||||||||||| || ||| | |||||||| || | |||||||||||||||| || ||
Sbjct 1732 GGGGATGACCAAGGAAGCTTGTTTACAAATTC-GAATTGGTTCACATTCCAAGACGATAG 1790
Query 1963 ATTCAGCAACCCGACCTCTGACAC-GATGAT-CGAGGACGT--GA--ACATG-AAT-GAA 2014
|||| ||| | || |||||||||| | | | ||| ||||| || || || ||| |||
Sbjct 1791 ATTCGGCAGCACGCCCTCTGACACAGCGGGTTCGAAGACGTTAGAGGACGTGGAATTGAA 1850
Query 2015 -ACCACA---AATGCTAATGA-TAGCAGCAGC-AGTGATGATGAACTTCTGGTTGAAGAA 2068
| || ||||| || | |||||| || | |||||||| || |||||| ||
Sbjct 1851 TAAAACCTTTAATGCCAAC-ACTAGCAGTAGTGAC-GATGATGAGGTTGTGGTTG--GA- 1905
Query 2069 GAAGAAGACGATGATCTAACAGAGAAA 2095
|||||||||||||||||||| | ||||
Sbjct 1906 GAAGAAGACGATGATCTAACTG-GAAA 1931
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 103605466400
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5