BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G28370.1
Length=1121
Score E
Sequences producing significant alignments: (Bits) Value
Ahg481668 jgi|Araly1|481668|fgenesh2_kg.4__728__AT2G28370.1 1389 0.0
> Ahg481668 jgi|Araly1|481668|fgenesh2_kg.4__728__AT2G28370.1
Length=957
Score = 1389 bits (752), Expect = 0.0
Identities = 906/977 (93%), Gaps = 24/977 (2%)
Strand=Plus/Plus
Query 84 aaaaccatttccacgatcttcttcttcttcttcCCTCAAATATAGCTTAGGATTTTCTTA 143
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1 AAAACCATTTCCACGATCTTCTTCTTCTTCTTCCCTCAAATATAGCTTAGG-GTTTCTTA 59
Query 144 ATTTCCTCTACCCAAG--CTCCATGGCTGCTTTCAATTTCTTCCTCTCTTCTTAATTCTC 201
|||||||||||||||| ||||||||||||| |||||||||||||||||||| ||||||
Sbjct 60 ATTTCCTCTACCCAAGCTCTCCATGGCTGCTCGCAATTTCTTCCTCTCTTCTTGATTCTC 119
Query 202 TCAGGTAGGGGAGATTTGAGTAGTAGTAGATTGTTAGATTTGTAATTCAGCTATTGGTGA 261
|||||||||||||||||||||| || |||||| || |||||| | ||||||||||||| |
Sbjct 120 TCAGGTAGGGGAGATTTGAGTACTACTAGATTATTGGATTTGGATTTCAGCTATTGGT-A 178
Query 262 AGAGGAAGGGAGAGAGAGATGTGTTGAATTGGTTGAGTTTGGTGGAGGAAAGAAGAAGAA 321
| | | | || |||||||||||||||||||||||| |||||||||| | | | |||||
Sbjct 179 A-A-G-A-GG-GAGAGAGATGTGTTGAATTGGTTGTGTTTGGTGGA-G---G-A-AAGAA 227
Query 322 GAAATGAATGTGAGCCATGCATCGGTACATCCAGTGGAAGATCCTCCTGCAGCTGCGACG 381
|||||||||||||||||||||||||| ||||| || ||||| ||| || |||| |||
Sbjct 228 GAAATGAATGTGAGCCATGCATCGGTTCATCCGGTTGAAGA---TCC-GC--CTGCTACG 281
Query 382 GAAGTAGAGAATCCGCCTCGGGTGAGGATGGATGATATGGAAGGAATGCCTGGAACATTG 441
||||| || |||||||| |||||||||||||||||||||||||| ||||||||||| |||
Sbjct 282 GAAGTTGATAATCCGCCACGGGTGAGGATGGATGATATGGAAGGCATGCCTGGAACTTTG 341
Query 442 CTTGGTCTTGCATTGCGtttttttCAGTTCTTGTTTGCTGCTGCTGCTCTTTGTGTCATG 501
||||| |||||||||||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct 342 CTTGGGCTTGCATTGCGTTTTTTTCAGTTCTTGTTTGCAGCTGCTGCGCTTTGTGTCATG 401
Query 502 GCTTCTACTAGTGATTTTCCTTCCGTTACCGCCTTCTGCTACCTAGTTGCAGCTACTGGT 561
||| ||||||||||||| |||||||||||||||||||| |||||||||||||| |||||
Sbjct 402 GCTACTACTAGTGATTTCCCTTCCGTTACCGCCTTCTGTTACCTAGTTGCAGCCACTGGC 461
Query 562 CTGCAGAGCTTGTGGAGTCTTGCACTAGCCATGGTTGACGTCTATGCCATTATGGTCAAA 621
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 462 CTGCAGAGCTTGTGGAGTCTTGCACTAGCCATGGTTGACGTCTATGCCATTATGGTCAAA 521
Query 622 CGCTCTCTACAGAACCGTCGACTTGTGAGCTTGTTTGCAATTGGTGATGGGGTGACATCG 681
|| || |||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 522 CGTTCCCTACAGAACCGTCGACTTGTGAGCTTGTTTGCGATTGGTGATGGGGTGACATCA 581
Query 682 ACGCTGACTTTTGCAGCAGCTTGTGCATCGGCAGGCATAACGGTTCTAATAGACAACGAT 741
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 582 ACGCTGACTTTTGCAGCAGCTTGTGCATCGGCAGGCATAACGGTTCTAATAGACAACGAT 641
Query 742 CTGAATAGCTGCGCACAAAACCACTGTGTTCAGTTTGAAACATCAACGGCATTAGCTTTC 801
||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||
Sbjct 642 CTGAATAGCTGCGCACAAAACCATTGTGTTCAGTTTGAAACATCAACAGCATTAGCTTTC 701
Query 802 ATAAGCTGGTTCGCTGCTTTGCCTTCGTTTCTCTTCAATTTCTGGTCTCTTGCATCCCGT 861
||||||||||| ||||||||||| || ||||||||||| |||||||||||||||||||||
Sbjct 702 ATAAGCTGGTTTGCTGCTTTGCCCTCTTTTCTCTTCAACTTCTGGTCTCTTGCATCCCGT 761
Query 862 TGACACGATACTGCTCAGCAAGATGTGTTTTCATGGTGTGT-TTTTCGGTGTATAGTGAC 920
||||| || |||| || |||||||||||||||||||||| | ||||||||||||||||||
Sbjct 762 TGACATGACACTGTTCCGCAAGATGTGTTTTCATGGTGTTTATTTTCGGTGTATAGTGAC 821
Query 921 TGATTTTTCTTCTTCTTTCTTGTTTTGGGTTTGGAACCAACTTTCTTCAAACCCAATACT 980
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 822 TGATTTATCTTCTTCTTTCTTGTTTTGGGTTTGGAACCAACTTTCTTCAAACCCAATACT 881
Query 981 TGGAAACTGGGAATTGTTTTGTAGACGACGACCTTATTCATTTTGTTGTACAATGA-AAC 1039
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 882 GGGAAACTGGGAATTGTTTTGTAGACGACGACCTTATTCATTTTGTTGTACAATGACAAG 941
Query 1040 TATCTGGTCGGCTTTGT 1056
|| |||||||||||||
Sbjct 942 -ATTTGGTCGGCTTTGT 957
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41782717032
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5