BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G28380.1
Length=1857
Score E
Sequences producing significant alignments: (Bits) Value
Ahg481667 jgi|Araly1|481667|fgenesh2_kg.4__727__AT2G28380.1 2274 0.0
> Ahg481667 jgi|Araly1|481667|fgenesh2_kg.4__727__AT2G28380.1
Length=1778
Score = 2274 bits (1231), Expect = 0.0
Identities = 1656/1843 (90%), Gaps = 102/1843 (6%)
Strand=Plus/Plus
Query 34 ctctctctatctctctctGCAAAAACCCTAAATTTCCTCCGATTTCACCATCTTCAATCT 93
|||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 CTCTCTCTCTATCTCTCTGCAAAAACCCTAAATTTCCTCCGATTTCACCATCTTCAATCT 60
Query 94 CCTTCACACCCCAACTTAGCCTCTTAATCACTCCCCAAGCTAAACCCTCCAACGATTTTC 153
| ||||||||| ||||||||||||||||||||| |||||| |||||||||||||||||||
Sbjct 61 CATTCACACCCAAACTTAGCCTCTTAATCACTCACCAAGCAAAACCCTCCAACGATTTTC 120
Query 154 CATGATTCGAAGATACAG-AGCCTTAGCGATGAAGAAAAAGCCCTAAAAACCAAAGCTTT 212
||||||| ||||||| || || | || |||||||||||||||||||||||| || ||||
Sbjct 121 CATGATTGGAAGATATAGAAG-CAGAGAGATGAAGAAAAAGCCCTAAAAACCGAACCTTT 179
Query 213 GATCTCTCCGAAATCGGAGTTTCTTTCTTTGTTTGGTAAATTTGGTTTTCG-AAATGTAT 271
|||||||||||||||||| | | | ||||| ||||| ||||||||
Sbjct 180 GATCTCTCCGAAATCGGA------------G--T--T---TTTGG-TTTCGAAAATGTAT 219
Query 272 AAGAACCAGCTACAAGAGTTGGCTCAGAGGAGCTGCTTTAATCTTCCTTCGTATACTTGT 331
||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 220 AAGAACCAGCTACAAGAGTTGGCGCAGAGAAGCTGCTTTAATCTTCCTTCGTATACTTGT 279
Query 332 ATTAGGGAAGGTCCTGACCACGCGCCGCGATTCAAGGCTACTGTTAACTTTAACGGCGAG 391
||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 280 ATTAGAGAAGGTCCTGACCACGCGCCGCGATTCAAGGCTACTGTTAACTTTAACGGTGAG 339
Query 392 ATCTTTGAGAGTCCTCAGTATTGTTCTACTCTTCGTCAAGCTGAACACTCTGCTGCTGAA 451
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 340 ATCTTTGAGAGTCCTCAGTATTGTTCTACTCTTCGTCAAGCTGAGCACTCTGCTGCTGAA 399
Query 452 GTTGCTCTCAATGCTCTCTCTAATCGTGGTCCTTCTCACTCTCTTGCCGCCAGGATCTTG 511
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 400 GTTGCTCTCAATGCTCTCTCTAATCGTGGTCCTTCTCACTCTCTTGCATCCAGGATCTTG 459
Query 512 GATGAGACGGGTGTGTATAAGAATCTTTTGCAAGAGATAGCTCAAAGAGTGGGAGCTCCT 571
|||||||| ||||||||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct 460 GATGAGACTGGTGTGTATAAGAATCTGTTGCAAGAAATAGCTCAAAGAGTGGGAGCTCCT 519
Query 572 TTACCGCGATATACTACTTTCAGGTCAGGTCTTGGTCACCAACCTGTGTTTACTGGTACT 631
||||||||||| || || |||||||| || ||||| ||||||||||||||||||||||||
Sbjct 520 TTACCGCGATACACGACCTTCAGGTCTGGGCTTGGACACCAACCTGTGTTTACTGGTACT 579
Query 632 GTAGAATTGGCTGGAATTACGTTCACTGGAGATCCAGCTAAGAACAAGAAGCAAGCAGAG 691
||||||||||||||||| || ||||||||||||||||||||||| |||||||||||||||
Sbjct 580 GTAGAATTGGCTGGAATCACATTCACTGGAGATCCAGCTAAGAATAAGAAGCAAGCAGAG 639
Query 692 AAGAATGCTGCAATGGCTGCTTGGTCTTCCCTAAAACAATTGGCAAAAGAAACATCAAGT 751
||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 640 AAGAATGCTGCTATGGCTGCTTGGTCTTCCCTAAAACAATTGGCAAAAGAAACTTCAAGT 699
Query 752 TCAATGCCTGAGCCTGAGAACATTGACGAACTAGAACAGGTGATTATAGCAAGAGCTTTG 811
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 700 TCAATGCCTGAGCCTGAGAACATTGACGAACTAGAACAGGTGATTATAGCAAGAGCTTTG 759
Query 812 ATAAACTATCGTATCAAGGAAAACATTGGCACAGGAAGCTCCTCGAGTGCCCCAGTTCCA 871
||||||||||||||||||||||| ||||| ||||||||||||||||||||||| ||||||
Sbjct 760 ATAAACTATCGTATCAAGGAAAATATTGGTACAGGAAGCTCCTCGAGTGCCCCGGTTCCA 819
Query 872 TTTGCAAAGAAGTTCTTTATGCAGAACCTTAGACCAACAAGTCCACAGCCTTCTCCTGCA 931
|||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||
Sbjct 820 TTTGCAAAGAAGTTCTTTATGCAGAACCCTAGACCGACAAGTCCACAGCCTTCTCCTGCT 879
Query 932 ACCACATCGAGAATCTTACCCTTTATTTGCCCAAAACAACCTTCCAGAAGCAGCAGATCA 991
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 880 ACCACATCGAGAATCTTACCCTTTATTTGCCCAAAACAACCTTCCAGAAGCAGCAG---A 936
Query 992 TCCTTAGCAGCAACTTCCGGTATTGACAGAATTATGGCAGCAGCCTTGGAAAGCCGCAGC 1051
||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 937 TCCTTAGCAGCAAATTCCGGTATTGACAGAATTATGGCAGCAGCCTTGGAAAGTCGCAGC 996
Query 1052 TACCAGCGGCCTCAGCAGAGATTT----------GCA-A--A--TCCGCCTTATGTTCCT 1096
|||||||||||||||||||||||| ||| | | || ||||||||||| |
Sbjct 997 TACCAGCGGCCTCAGCAGAGATTTGCAAACCCAGGCACAGCAGCTCAGCCTTATGTTCGT 1056
Query 1097 ATGAGGCAATTT-AGATCGCAATGCCATGGGATGGCTCCACCTGTCACAATCAGAACCGC 1155
||||| | |||| ||||| | |||||||||||||||||||||||||||||||||||||||
Sbjct 1057 ATGAGAC-ATTTAAGATCACCATGCCATGGGATGGCTCCACCTGTCACAATCAGAACCGC 1115
Query 1156 TGTACCGGTCTTCTCTGCACCTCCAATGCCTCCTCCACCATGTACAAACAACACTCAGCT 1215
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1116 TGTACCGGTCTTCTCTGCACCTCCAATGCCTCCTCCTCCATGTACAAACAACACTCAGCT 1175
Query 1216 ACCTTCTTCTGTGTATGTCCCATCGCTGATGCGAACTGCACCACCTGTGAGGATCGCGCC 1275
|||||||||||| ||||| |||||||||||||||||||||||||||||||| ||||| ||
Sbjct 1176 ACCTTCTTCTGTCTATGTGCCATCGCTGATGCGAACTGCACCACCTGTGAGAATCGCACC 1235
Query 1276 GCCTGTCACAATCAGAACCGCGGTGCCCGTATTTGCTTCTGCGCCACCGGTTAGAATT-- 1333
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1236 ACCTGTCACAATCAGAACCGCGGTGCCCGTTTTTGCTTCTGCGCCACCGGTTAGAATTAG 1295
Query 1334 ---A---GA-A--C---C-GCTGTGAAGCCCACAGTTGAGGCAGGAGAAACCC-GCATAT 1379
| || | | | |||||||||||||||||||||| ||||||||||| | |||
Sbjct 1296 AAAAGTGGATATCCAAACTGCTGTGAAGCCCACAGTTGAGGTAGGAGAAACCCAG-GTAT 1354
Query 1380 CATCAGTCCAAG-AAA--AGGAGAGTATACCAGTCTTGCCTGATAGTCTTGAAATTGGAG 1436
||| ||||||| ||| |||||||||| |||||||||||||||| ||||||||||||||
Sbjct 1355 CATTGGTCCAAGAAAAGGAGGAGAGTATTCCAGTCTTGCCTGATACTCTTGAAATTGGAG 1414
Query 1437 TAGAAGGAAGTACTATAACAATTACAGATTGTGAGAAAACAGCGTCAAAGGAAACCGAGA 1496
|| ||||| ||||||| ||||| |||| ||| | | | |||| | ||
Sbjct 1415 AAGTAGGAATTACTATACCAATTTCAGA----GAG-----A--G----A-GAAAAC-AG- 1456
Query 1497 GAGCAGAGTTTAAGGATTCATCGAAAGGAGAACCGGAGACAGCAAGAGAGCGACTGGAGA 1556
|| | ||||| ||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1457 CTGC--A----AAGGACTCATCGAAAGGAGAAGCGGAGACAGCAAGAGAGCGACTGGAGT 1510
Query 1557 ACCTAAAGATCTGATGCCTTGAAGACTGTCTCTGGGTTTAGttttttttGAGGTTGGTTT 1616
||||||| |||||||| ||||| ||| ||||||| |||||| |||||||||||||||||
Sbjct 1511 ACCTAAAAATCTGATGTCTTGAGGACCGTCTCTGAGTTTAG--TTTTTTGAGGTTGGTTT 1568
Query 1617 CTGAAAATTGTTACATTAGTAATCTCGTTCGTTATTATACTCGGTGGATCGAGTAGTTTG 1676
|||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||
Sbjct 1569 CTGAAAATTGTTACATTAGTAA--TCGTCCGTTATTATACTCGGTGGATCGAGTAGTTTG 1626
Query 1677 ATAATCCGAAAGATTTGTATTATATTGGGGAGTTTTGGGAAGAACCTGGCCATCTCTGGA 1736
||||||||||||||||||||||||||||| |||||| ||| |||||||||||||||||||
Sbjct 1627 ATAATCCGAAAGATTTGTATTATATTGGG-AGTTTTAGGAGGAACCTGGCCATCTCTGGA 1685
Query 1737 TTGTAGAATTGTATCAGTTTCGCTTCCTATTCAGTTTGTTTGTGTCCTTTTTCTCATCTT 1796
||||||||||||||||||||| ||| |||||| ||||||||||||||||||| ||
Sbjct 1686 TTGTAGAATTGTATCAGTTTCACTTTCTATTCTGTTTGTTTGTGTCCTTTTT---AT--- 1739
Query 1797 TTATAAATCTGTTACCTATCGTTGTTCCAGCAGAATCAAGCTC 1839
| || || |||||||||||| ||||||| ||||||||||||
Sbjct 1740 --A-AA-TCCGTTACCTATCGTCGTTCCAGAAGAATCAAGCTC 1778
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 69743238595
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5