BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G28390.1
Length=2170
Score E
Sequences producing significant alignments: (Bits) Value
Ahg481666 jgi|Araly1|481666|fgenesh2_kg.4__726__AT2G28390.1 2833 0.0
> Ahg481666 jgi|Araly1|481666|fgenesh2_kg.4__726__AT2G28390.1
Length=2167
Score = 2833 bits (1534), Expect = 0.0
Identities = 1829/1963 (93%), Gaps = 53/1963 (3%)
Strand=Plus/Plus
Query 2 GCAGAGAGAATCAATGAACACGTCTTGCCATTAGAGGAGACCAACCATTTCTCTCCTCTC 61
|||||||||||||||||||| | |||||||||||||||||||||| ||||||||||||||
Sbjct 1 GCAGAGAGAATCAATGAACAAGGCTTGCCATTAGAGGAGACCAACAATTTCTCTCCTCTC 60
Query 62 TC-TTG----A-----AAAATCTATAACCGATTTCTGCAATGGCGACTTCAGATTCGAGG 111
|| ||| | ||||||| |||||||||||||||||||||||||||||||||||
Sbjct 61 TCTTTGACAAATCCCTAAAATCTCTAACCGATTTCTGCAATGGCGACTTCAGATTCGAGC 120
Query 112 TCTTCTCCTTCATCATCCGACACCGAATTCGCCGATCCAAATCCTAGCTCCGATCCAGAG 171
||||||||||||||||| | |||||||||||||||||||| |||||| |||||||||||
Sbjct 121 TCTTCTCCTTCATCATCTGGTACCGAATTCGCCGATCCAAACCCTAGCACCGATCCAGAG 180
Query 172 ACGAATTCGGAGCGTGTTCAAAGTCAATTAGAGTCAATGAATTTATCTCAACCTAGCGAA 231
|||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 181 ACGAATTCAGAGCGTGTTCAAAGTCAATTAGAGTCAATGAATTTATCTCAACCAAGCGAA 240
Query 232 GTCTCTGATGGTAGCCACACCGAATTTAGCGGTGGCGGCGATGATAATGATGATGAGGTT 291
|||||||||||||||||||| ||||||||| |||||||||||| |||||||||| |||
Sbjct 241 GTCTCTGATGGTAGCCACACTGAATTTAGC---GGCGGCGATGATGATGATGATGATGTT 297
Query 292 GCATCGGCTAACGGGAACGAAGGCGGAGTTAGCAATGGAGGTTTATTGCGTGAAGGTGTG 351
|||||||||||||| |||||||||||||||||||||||||||||| || |||||||||||
Sbjct 298 GCATCGGCTAACGGAAACGAAGGCGGAGTTAGCAATGGAGGTTTAGTGAGTGAAGGTGTG 357
Query 352 GCGGGAACTAGC---G--GAGG--A--GAGGTTTTGTTAAGGGCGGAAAATCCGGTGGAA 402
||||||| |||| | |||| | ||||||| |||||||||||| ||||||||||||
Sbjct 358 GCGGGAATTAGCGGAGAAGAGGAAATGGAGGTTTCGTTAAGGGCGGAGAATCCGGTGGAA 417
Query 403 ATGGAAGCAGGTGAAGAACCACCGAGTCCGACTAGTAGCGGTTACGATGGAGAGAGAGGA 462
||||| ||||| || || || ||||||||||||||||||||||| ||||||||||||||
Sbjct 418 ATGGAGGCAGGGGAGGAGCCGCCGAGTCCGACTAGTAGCGGTTATGATGGAGAGAGAGGG 477
Query 463 AGTAGCGGCGGAGCTACTTCTACTTATAAAGCTGATGATG-GAAGCGAGGATGAGATTAG 521
|||||||| ||||||||||||||||||||||||||||| | | || |||||||||||| |
Sbjct 478 AGTAGCGGTGGAGCTACTTCTACTTATAAAGCTGATGACGTG-AGTGAGGATGAGATTCG 536
Query 522 GGAAGCTAATGTGGATGGTGACACTGCCTCGCAGCATGAAGCTGCGTGGTTGCCTGGAAA 581
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 537 GGAAGCTAATGTGGATGGTGACACTGCTTCGCAGCATGAAGCTGCGTGGTTGCCTGGAAA 596
Query 582 ACGCCATGTTGATGAGGATGATGCTTCTACGTCATGGAGAAAGAGGAAGAAGCATTTCTT 641
||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 597 ACGCCATGTCGATGAGGATGATGCTTCTATGTCATGGAGAAAGAGGAAGAAGCATTTCTT 656
Query 642 CATACTGAGTAACTCAGGCAAACCGATATATTCCAGATATGGAGATGAACATAAGCTTGC 701
||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 657 CATTTTGAGTAACTCCGGCAAACCGATATATTCCAGATATGGAGATGAACATAAGCTTGC 716
Query 702 TGGATTTTCAGCTACTCTTCAAGCTATTATTTCTTTTGTGGAGAATGGTGGTGACCGTGT 761
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 717 TGGATTTTCAGCTACTCTTCAAGCTATTATTTCTTTTGTGGAGAATGGTGGTGACCGTGT 776
Query 762 CAACTTAGTCAAGGCAGGAAATCACCAGGTTGTCTTTCTCGTTAAGGGGCCAATATATCT 821
||| ||||||||||||||||| |||||||||||||||||||| |||||||||||||| ||
Sbjct 777 CAATTTAGTCAAGGCAGGAAAACACCAGGTTGTCTTTCTCGTGAAGGGGCCAATATACCT 836
Query 822 GGTCTGCATCAGCTGTACAGATGAAACATATGAGTATTTAAGGGGGCAGTTGGATCTTCT 881
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 837 GGTCTGCATCAGCTGTACAGATGAAACATATGAGTATTTAAGGGGGCAGTTGGATCTTCT 896
Query 882 ATATGGTCAGATGATACTAATTTTAACAAAATCAATAGACAGATGTTTTGAAAAGAATGC 941
|||||||||||||||||||||||||||||| ||||||||||||||||| || ||||||||
Sbjct 897 ATATGGTCAGATGATACTAATTTTAACAAAGTCAATAGACAGATGTTTCGAGAAGAATGC 956
Query 942 AAAGTTCGATATGACACCCTTGCTTGGAGGGACAGATGCTGTCTTCTCATCTCTTGTCCA 1001
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 957 AAAGTTCGATATGACACCCTTGCTTGGAGGGACAGATGCTGTCTTCTCATCTCTTGTCCA 1016
Query 1002 TTCATTTAGCTGGAACCCAGCTACATTTCTTCATGCCTATACTTGTCTTCCCCTTCCATA 1061
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1017 TTCATTTAGCTGGAACCCAGCTACATTTCTTCATGCCTATACTTGTCTTCCCCTTCCGTA 1076
Query 1062 TGCGTTAAGGCAAGCTACAGGAACCATATTGCAAGAAGTTTGCGCGTCTGGTGTCTTATT 1121
||| |||||||||||||| || |||||||||||||| |||||||||||||||||||| ||
Sbjct 1077 TGCATTAAGGCAAGCTACGGGGACCATATTGCAAGACGTTTGCGCGTCTGGTGTCTTGTT 1136
Query 1122 CTCACTACTAATGTGCAGACACAAGGTTGTCAGTCTTGCTGGTGCACAGAAAGCGTCTCT 1181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1137 CTCACTACTAATGTGCAGACACAAGGTTGTCAGTCTTGCTGGTGCACAGAAAGCGTCTCT 1196
Query 1182 CCATCCCGATGACTTGCTTCTACTCTCAAATTTTGTCATGTCATCAGAATCATTCAGG-A 1240
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1197 CCATCCCGATGACTTGCTTCTACTCTCAAATTTTGTCATGTCATCAGAATCATTCAGGCA 1256
Query 1241 ----C-A--T-------C-A---GAA--TC----T-TT-CTCACCAATCTGCCTACCAAG 1274
| | | | | ||| || | || |||||||||||||||||| ||
Sbjct 1257 AGTGCTAAATATTTTGTCCATCAGAACATCAGAATCTTTCTCACCAATCTGCCTACCGAG 1316
Query 1275 ATACAACGCTCAGGCCTTTTTGCATGCCTATGTCCACTTCTTTGATGATGATACATATGT 1334
||||||||| ||||||||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct 1317 ATACAACGCCCAGGCCTTTTTACATGCTTATGTCCACTTCTTTGATGATGATACATATGT 1376
Query 1335 AATATTGCTTACCACACGTTCAGATGCGTTCCATCATCTCAAAGATTGCAGGGTACGCCT 1394
|||||||||||| ||||||||||| || |||||||||||||||||||||||||| ||| |
Sbjct 1377 AATATTGCTTACTACACGTTCAGACGCCTTCCATCATCTCAAAGATTGCAGGGTTCGCAT 1436
Query 1395 TGAGGCTGTTCTTCTCAAGTCAAATATTCTAAGTGTGGTTCAAAGATCAATCGCGGAAGG 1454
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1437 TGAGACTGTTCTTCTCAAGTCAAATATTCTAAGTGTGGTTCAAAGATCAATCGCGGAAGG 1496
Query 1455 TGGAATGCGTGTTGAAGATGTACCAATAGACCGCAGGCGTCGATCATCTACTACTAATCA 1514
||||||||||||||||||| |||| ||||||||||||||||| |||||||||||||||||
Sbjct 1497 TGGAATGCGTGTTGAAGATTTACCTATAGACCGCAGGCGTCGCTCATCTACTACTAATCA 1556
Query 1515 AGAACAAGACT-CACCTGGTCCCGACATATCTGTGGGAACCGGAGGTCCCTTTGGACTTT 1573
| |||||| | || ||| ||| || |||||||||||||||||||||||| ||||||||
Sbjct 1557 GGGACAAGA-TACAGCTGTTCCAGAGGTATCTGTGGGAACCGGAGGTCCCTGTGGACTTT 1615
Query 1574 GGCATTTCATGTACCGTAGTATATACTTAGATCAATACATTTCCTCGGAATTCTCACCCC 1633
|||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| |
Sbjct 1616 GGCATTTCATGTACCGTAGTATATACTTAGATCAATACATATCCTCTGAATTCTCACCTC 1675
Query 1634 CAGTAACTAGTCACAGACAACAGAAAAGTCTATATCGAGCATACCAGAAACTTTATGCTT 1693
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1676 CAGTAACTAGTCACAGACAGCAGAAAAGTCTATATCGAGCATACCAGAAACTTTATGCTT 1735
Query 1694 CAATGCATGTAAAAGGATTGGGACCCCACAAGACTCAATATAGAAGAGATGAAAACTACA 1753
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1736 CAATGCATGTAAAAGGATTGGGACCTCACAAGACTCAATATAGAAGAGATGAAAACTACA 1795
Query 1754 CTCTTCTATGTTGGGTCACACCAGATTTTGAACTCTATGCAGCATTTGATCCACTTGCAG 1813
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1796 CTCTTCTATGTTGGGTTACACCAGATTTTGAACTCTATGCAGCATTTGATCCACTTGCAG 1855
Query 1814 ACAAGGCGATGGCGATAAAGATATGCAATCAGGTGTGCCAAAGGGTAAAAGATGTGGAGA 1873
|||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||
Sbjct 1856 ACAAGGCGATGGCGATAAAGATATGCAATCAGGTATGCCAAAGGGTAAAAGATGTAGAGA 1915
Query 1874 ATGAAGTGTTCTTGCAAGGAGCTAGTCCTTTCTCTTGGTGATA 1916
||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1916 ATGAAATGTTCTTGCAAGGAGCTAGTCCTTTCTCTTGGTGATA 1958
Score = 287 bits (155), Expect = 3e-76
Identities = 196/213 (92%), Gaps = 14/213 (7%)
Strand=Plus/Plus
Query 1961 TCTTTCTACTGGTTTGACCCCCTATATTGTGCTAGTACCACCCACCTTAATAAGGCAATA 2020
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1965 TCTTTCTACTATTTTGACCCCCTATATTGTGCTAGTACCACCCACCTTAATAAGGCAATA 2024
Query 2021 ATGTAATTGT---ACCCAGAAACCCTTGAGAGAAA-GCTATTTCATTGCCTTTATTGTTA 2076
|||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 2025 ATGTAATTGTTGTACCCAGAAACCCTTGAGAGAAAAGCTATTTCATTGCCTTTATTGTTA 2084
Query 2077 TTAATTAGCTTGAATAGTCAAAATTGAGATGATGTAGACAAAAATTGAAACTATTTGAAA 2136
|||||||||||||||||||||||||||| ||||||||||||||||||||| | ||
Sbjct 2085 TTAATTAGCTTGAATAGTCAAAATTGAGTTGATGTAGACAAAAATTGAAA--A---GA-- 2137
Query 2137 AGTGAGCAATAATATTAAGGTTTTGATGGAAGG 2169
| |||||||||||||||||||||||||||||
Sbjct 2138 -G--AGCAATAATATTAAGGTTTTGATGGAAGG 2167
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 81665485280
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5