BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT2G28410.1

Length=805
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg933179 jgi|Araly1|933179|scaffold_401167.1                        538    2e-152


> Ahg933179 jgi|Araly1|933179|scaffold_401167.1
Length=390

 Score =  538 bits (291),  Expect = 2e-152
 Identities = 355/386 (92%), Gaps = 4/386 (1%)
 Strand=Plus/Plus

Query  53   ACAGAAGCTGAGTTAGAGAAATGACTTCGAAAACATGCCTCGtcttcttcttctcttctc  112
            ||| ||||||||| ||||||||||||||||||||||| ||| ||||||||||||||||||
Sbjct  1    ACACAAGCTGAGTGAGAGAAATGACTTCGAAAACATGTCTCATCTTCTTCTTCTCTTCTC  60

Query  113  tAATCTTAACAAACTTCGCCTTAGCGCAAGACCGAGCTCCTCACGGGTTGGCTTATGAGA  172
            |||| || |||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct  61   TAATTTTTACAAACTTCGCCTTAGCGCAAGACCGAGCTCCTCACGGATTGGCTTATGAGA  120

Query  173  CCCCAGTGGCATTTTCACCTTCTGCATTTGACTTCTTTCACACACAACCAGAAAACCCGG  232
            ||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||
Sbjct  121  CCCCAGTGGCATTTTCACCTTCTGCATTTGACTTCTTTCATGCACAACCAGAAAACCCGG  180

Query  233  ATCCCACTTTCAACCCTTGC-TCGGAATCCGGCTGCTCACCTCTTCCCGTTGCTGCAAAG  291
            |||| ||||| ||||||||| | | ||||||||||||| ||||| |||||||||||||||
Sbjct  181  ATCCTACTTTAAACCCTTGCGTAG-AATCCGGCTGCTCGCCTCTCCCCGTTGCTGCAAAG  239

Query  292  GTCCAAGGAGCTTCTGCGAAAGCACAGGAAAGCGATATAGTATCAATTTCAACTGGTACA  351
            ||||||||||||||||| |||||||||||||||||||||| |||||| |||| |||| | 
Sbjct  240  GTCCAAGGAGCTTCTGCAAAAGCACAGGAAAGCGATATAGCATCAATGTCAATTGGTTCT  299

Query  352  AGAAGCGGAATAGAAGA-ACATGGTGTGGTTGGAATCATCTTTGGACTTGCGTTTGCGGT  410
            ||||||||| ||||||  |  | |||||||||| ||||||||||||||||||||||||||
Sbjct  300  AGAAGCGGAGTAGAAGCTAG-TCGTGTGGTTGGGATCATCTTTGGACTTGCGTTTGCGGT  358

Query  411  GATGATGTGAACCATTATAGATCATT  436
            | ||||||||||||||||||| ||||
Sbjct  359  GCTGATGTGAACCATTATAGAGCATT  384



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 29735875260


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5