BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G28420.1
Length=869
Score E
Sequences producing significant alignments: (Bits) Value
Ahg481659 jgi|Araly1|481659|fgenesh2_kg.4__719__AT2G28420.1 990 0.0
> Ahg481659 jgi|Araly1|481659|fgenesh2_kg.4__719__AT2G28420.1
Length=685
Score = 990 bits (536), Expect = 0.0
Identities = 640/689 (93%), Gaps = 11/689 (2%)
Strand=Plus/Plus
Query 1 AAGCTTTGTCTCGTCGGAATCTGATGGAGGAGAAGAAGAAGAAAGGCGATGATGAATTGA 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1 AAGCTTTGTCTCGTCGGAATCTGATGGAGGAGAAGAAGAAGAAAGGCGATGATGAATCGA 60
Query 61 ACTCGAAACCGCCGTTAATGGCGTTGAACCATGTGTCAAGGCTTTGTAAAGACGTCAAAA 120
|||||||| | ||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 61 ACTCGAAAGCACCGTTAATGGCGTTGAACCATGTGTCAAGGCTTTGCAAAGACGTCAAAA 120
Query 121 AGTCTCTCGAGTTCTACACAAAGGTATTAGGGTTCGTGGAGATAGAGCGTCCAGCTTCTT 180
||||||| ||||| ||||| |||||||||||||||||||||||||||||||||||||| |
Sbjct 121 AGTCTCTGGAGTTTTACACGAAGGTATTAGGGTTCGTGGAGATAGAGCGTCCAGCTTCGT 180
Query 181 TCGACTTCGACGGTGCGTGGCTTTTCAACTACGGCGTTGGGATCCACTTGGTGCAGGCCA 240
| |||||| |||| ||||||||||| |||||||||||||||||||| |||||||| ||||
Sbjct 181 TGGACTTCAACGGCGCGTGGCTTTTTAACTACGGCGTTGGGATCCATTTGGTGCAAGCCA 240
Query 241 AGGACCAAGATAAGTTACCTTCTGACACGGACCATTTGGACCCAATGGATAACCACATCT 300
|||||||||| ||||||||||| |||||| ||||||||||||||||||||||||||||||
Sbjct 241 AGGACCAAGACAAGTTACCTTCCGACACGAACCATTTGGACCCAATGGATAACCACATCT 300
Query 301 CTTTCCAGTGTGAAGATATGGAAGCTTTGGAGAAGAGGCTCAAGGAGGTGAAGGTAAAGT 360
||||||||||||||||||||||||||||||| |||||| |||||||||||||||| ||||
Sbjct 301 CTTTCCAGTGTGAAGATATGGAAGCTTTGGAAAAGAGGATCAAGGAGGTGAAGGTTAAGT 360
Query 361 ACATCAAGAGGACGGTGGGTGATGAGAAAGATGCAGCTATCGACCAGCTCTTCTTCAATG 420
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 361 ACATCAAGAGGACGGTGGGTGATGAGAAAGATGCAGCCATCGACCAGCTCTTCTTCAATG 420
Query 421 ACCCTGACGGCTTTATGGTTGAAATCTGTAACTGCGAGAATCTCGAACTTGTCCCGTGCC 480
|||| |||||||| ||||| |||||||||||||||||||||||||| ||||| ||| |||
Sbjct 421 ACCCCGACGGCTTCATGGTCGAAATCTGTAACTGCGAGAATCTCGAGCTTGTTCCGCGCC 480
Query 481 ATTCAGCCGACGCCATACGCCTCCCAGAAGACCGACATGCACCTCCTGTTGCCCTCCCTG 540
|||||||||| ||||||| |||||||||||||||||| ||||||||||||||||||||||
Sbjct 481 ATTCAGCCGATGCCATACACCTCCCAGAAGACCGACACGCACCTCCTGTTGCCCTCCCTG 540
Query 541 ACTCCTCCAACCGTAGGATGCCCCAGCCCAATTCTTAATACTATTTAGACTCGT-T--TC 597
||||| | | |||||||||||| ||||||||||||||||||| |||||||| | ||
Sbjct 541 ACTCCGACGA---TAGGATGCCCCAACCCAATTCTTAATACTATT-AGACTCGTCTCGTC 596
Query 598 --GTCTCTAGTTAGTACTGTGTTGTG--CTCAGCTCCCACTCTATTAGTTAATGTTTGTT 653
||||||| |||||||||||||||| ||||||| ||||||||||| ||||||||||||
Sbjct 597 TCGTCTCTACTTAGTACTGTGTTGTGTGCTCAGCTACCACTCTATTAATTAATGTTTGTT 656
Query 654 TGGGACACCAAGTCCTTCCAACCATGAGT 682
||||||||||| |||||||||||||||||
Sbjct 657 TGGGACACCAATTCCTTCCAACCATGAGT 685
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32175741948
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5