BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G28430.1
Length=496
Score E
Sequences producing significant alignments: (Bits) Value
Ahg933177 jgi|Araly1|933177|scaffold_401165.1 466 7e-131
> Ahg933177 jgi|Araly1|933177|scaffold_401165.1
Length=300
Score = 466 bits (252), Expect = 7e-131
Identities = 284/300 (95%), Gaps = 0/300 (0%)
Strand=Plus/Plus
Query 44 TTCGATAAGATAGTTTCCACCATGATCAGCATTCTCGCTCAGGAACGTCTTCTTGGTTAC 103
||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1 TTCAATAAGAGAGTTTCCACCATGATCAGCATTCTCGCTCAGGAACGTCTTCTTGGTTTC 60
Query 104 ACTCTTGGTAGCGCTTTGACTGGATTCATCGTTTTTGAGCAGAGAAAACTCATCCATGAC 163
|||||||||| |||||||||||| ||| |||||||||||||| ||||||||||||||||
Sbjct 61 ACTCTTGGTACCGCTTTGACTGGGTTCGTCGTTTTTGAGCAGCGAAAACTCATCCATGAA 120
Query 164 TCCGTTTCCGATCCTAAATCTCAATCCATTGATCAAGCTCAGGTGAGTGATCGTATTTTC 223
|| ||||| |||||||||||||||||| |||||||| |||||||||| ||||| ||||||
Sbjct 121 TCTGTTTCTGATCCTAAATCTCAATCCGTTGATCAATCTCAGGTGAGAGATCGCATTTTC 180
Query 224 GGGAAGAAATATCGTATGGAATTTGCGTCTCTGTGGAACAAAGCTGTGGATCAGACTTTT 283
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 181 GGGAAGAAATATCGTATGGAATTTGCATCTCTGTGGAACAAAGCTGTGGATCAGACTTTT 240
Query 284 GAACCTGCGATTGAGTATCTTAGTTCACGTAAATGGTAGAGATGGATAAGTTCTTTGCTG 343
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 GAACCTGCAATTGAGTATCTTAGTTCACGTAAATGGTAGAGATGGATAAGTTCTTTGCTG 300
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 18009438008
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5