BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G28430.1 Length=496 Score E Sequences producing significant alignments: (Bits) Value Ahg933177 jgi|Araly1|933177|scaffold_401165.1 466 7e-131 > Ahg933177 jgi|Araly1|933177|scaffold_401165.1 Length=300 Score = 466 bits (252), Expect = 7e-131 Identities = 284/300 (95%), Gaps = 0/300 (0%) Strand=Plus/Plus Query 44 TTCGATAAGATAGTTTCCACCATGATCAGCATTCTCGCTCAGGAACGTCTTCTTGGTTAC 103 ||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 1 TTCAATAAGAGAGTTTCCACCATGATCAGCATTCTCGCTCAGGAACGTCTTCTTGGTTTC 60 Query 104 ACTCTTGGTAGCGCTTTGACTGGATTCATCGTTTTTGAGCAGAGAAAACTCATCCATGAC 163 |||||||||| |||||||||||| ||| |||||||||||||| |||||||||||||||| Sbjct 61 ACTCTTGGTACCGCTTTGACTGGGTTCGTCGTTTTTGAGCAGCGAAAACTCATCCATGAA 120 Query 164 TCCGTTTCCGATCCTAAATCTCAATCCATTGATCAAGCTCAGGTGAGTGATCGTATTTTC 223 || ||||| |||||||||||||||||| |||||||| |||||||||| ||||| |||||| Sbjct 121 TCTGTTTCTGATCCTAAATCTCAATCCGTTGATCAATCTCAGGTGAGAGATCGCATTTTC 180 Query 224 GGGAAGAAATATCGTATGGAATTTGCGTCTCTGTGGAACAAAGCTGTGGATCAGACTTTT 283 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 181 GGGAAGAAATATCGTATGGAATTTGCATCTCTGTGGAACAAAGCTGTGGATCAGACTTTT 240 Query 284 GAACCTGCGATTGAGTATCTTAGTTCACGTAAATGGTAGAGATGGATAAGTTCTTTGCTG 343 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 241 GAACCTGCAATTGAGTATCTTAGTTCACGTAAATGGTAGAGATGGATAAGTTCTTTGCTG 300 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 18009438008 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5