BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G28450.1
Length=2692
Score E
Sequences producing significant alignments: (Bits) Value
Ahg900473 jgi|Araly1|900473|Al_scaffold_0004_1123 3770 0.0
> Ahg900473 jgi|Araly1|900473|Al_scaffold_0004_1123
Length=2457
Score = 3770 bits (2041), Expect = 0.0
Identities = 2328/2462 (95%), Gaps = 37/2462 (2%)
Strand=Plus/Plus
Query 134 ATGGAAACATCATCAATCGAAATCAACGAGCTTCCATTAGCCACCAAAACCCAAACACCT 193
||||||||| ||||||| ||||||||||||||||||||| |||||||||||| |||||||
Sbjct 1 ATGGAAACACCATCAATTGAAATCAACGAGCTTCCATTACCCACCAAAACCCTAACACCT 60
Query 194 CCTGCTTCCGTCGAGCCAATTCCAATGGAGACATCATCAATCGACGAGCTTCCATCGTCC 253
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 CCTGCTTCCGCCGAGCCAATTCCAATGGAGACATCATCAATCGACGAGCTTCCATCGTCC 120
Query 254 GATTCGAATGCAACGGATAACATTGAAGCTGTTGGTGAGAAACGGAAACGCGCCGATGAA 313
||||| ||| ||||||||| ||||||||| |||||||||||||| |||||| ||||||||
Sbjct 121 GATTCAAATCCAACGGATAGCATTGAAGCCGTTGGTGAGAAACGTAAACGCACCGATGAA 180
Query 314 GACGAGAAAACCAATCTCGAATCGTCAGACACGAAGATTACTACTCCTTCACCGTGGTGG 373
||||||||| ||||||||||||||| || ||||||| | |||||||||||||||||||
Sbjct 181 GACGAGAAACCCAATCTCGAATCGTTGGAGACGAAGA-T--TACTCCTTCACCGTGGTGG 237
Query 374 AAGACGAGTCTCTGTTCTTACTTTAGGCGTGAGGCTTCGTGTAGTCATGGAAACGAATGT 433
|| ||||||||||| ||||||||||||||||||||||||||||||||||||| ||| |||
Sbjct 238 AAAACGAGTCTCTGCTCTTACTTTAGGCGTGAGGCTTCGTGTAGTCATGGAAGCGAGTGT 297
Query 434 AAATACGCTCACGGTGAAGCGGAGCTCCGGATGAAACCGGATAATACTTGGGATCCGACT 493
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 298 AAATACGCTCACGGTGAGGCGGAGCTCCGGATGAAACCGGATAATACTTGGGATCCGACT 357
Query 494 TCTGAGCGTGGAAAGAAAGCCAAGGCTATGAAGATGTCTGAGCATGAAGAGAAAGAAGAA 553
|| |||||||||||||| || ||||||||||||||||||||||| ||||||||||||||
Sbjct 358 TCCGAGCGTGGAAAGAAGGCGAAGGCTATGAAGATGTCTGAGCAAGAAGAGAAAGAAGAC 417
Query 554 GACGAGGTTTTGTTTACTGAGCAGATGATGGAATCAATTGATGGTGATGAAGGAGGTGGT 613
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 418 GACGAGGTTTTGTTCACTGAGCAGATGATGGAATCAATTGATGGTGATGAAGGAGGTGGT 477
Query 614 GGTAGTGTTAGTGTTGTTGATTTGTCACTAAGTAAATGTTTGGTGCATTTACCTAATAAA 673
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 478 GGTAGTGTTAGTGTTGTTGATTTGTCACTAAGTAAATGTTTGGTGCATTTACCTAATAAA 537
Query 674 TGGCAATCTGATGAATTGAAGAAATTTTTAGGAGAACAGGGAGTTCTATATAAGTCTGCA 733
||||||||||||||| ||||||||||||||||||| |||||||||| |||||||||||||
Sbjct 538 TGGCAATCTGATGAACTGAAGAAATTTTTAGGAGAGCAGGGAGTTCAATATAAGTCTGCA 597
Query 734 AAGAAAAGAAGAGGAATGATTGTTGGTTTTGTTACATTTGAGAATGCAGAACAATTGCAG 793
|||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct 598 AAGAAAAGAAGAGGAATGATAGTTGGGTTTGTTACATTTGAGAATGCAGAACAATTGCAG 657
Query 794 AGTGGCGTGGAGATTTTGGATGGAAAAACTGTTAATAGCAGTAATTTGAAGATTGCTGAT 853
|||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 658 AGTGGCGTAGAGATTTTGGATGGGAAAACTGTTAATAGCAGTAATTTGAAGATTGCTGAT 717
Query 854 GTTCTTCCGCGTACATTTGACAAGAATGATGCAAGAAAATCGGTTAAAAGTGCTCGTGAC 913
|||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 718 GTTCTTCCCCGTACGTTTGACAAGAATGATGCAAGAAAATCGGTTAAAAGTGCTCGTGGC 777
Query 914 GCTGTGACTCCCTTGGCTTACTTGTCTTATGCTGACCAGCTTGAACaaaaaaaGACTTCT 973
||||||||||| ||||| || |||||||||||||||||||||||||||||||| |||||
Sbjct 778 GCTGTGACTCCTTTGGCAGACCTGTCTTATGCTGACCAGCTTGAACAAAAAAAGGCTTCT 837
Query 974 ATAGGCCAAATGCTGAAAAAACTTGCGAGGAATGCGCGTAAAGCTTGTCCAAATGGGAAT 1033
|| || |||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 838 ATTGGGCAAATGTTGAAAAAACTTGCGAGGAATGCGCGTAAAGCTTGTCCAAATGGGAAT 897
Query 1034 TCACTTCCACAATGGGTCCTTACATCGAGAGACAGAGGTGGTCTTGCATGCAACCTCGAG 1093
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 898 TCACTTCCACAATGGGTCCTTACATCTAGAGACAGAGGTGGTCTTGCATGCAACCTCGAG 957
Query 1094 GGCATTATAGAATCACCGATTACAAATGGCTACAGGAACAAGTGTGAGTTCTCGGTTGGA 1153
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 958 GGCATTATAGAATCACCGATTACAAATGGCTACAGGAACAAGTGTGAGTTCTCGGTTGGA 1017
Query 1154 TTATCTCTTCAGGGGAAGCCAACTGTTGGATTCAGTCTAGGAAGTTTTTGTGCGGGTGTG 1213
|| || |||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1018 TTGTCCCTTCAGGGGAAGCCAACTGTTGGATTCAGTCTAGGAAGTTTTTGCGCGGGTGTG 1077
Query 1214 ACAGCAGTCGAGGAGCCTGTGGATTGCCCCAACGTCTCCAAAATTGCT-TCTCAATATGC 1272
|||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||
Sbjct 1078 ACAGCAGTCGAGGAGCCTGTGGATTGCCCCAACGTCTCCAAAATTGCTGT-TCAATATGC 1136
Query 1273 TTCAATATTTCAGAAGTTTATAGAAAATTCAAAATTCCAAGTTTGGAATAGGTTTCAACA 1332
|||||| |||||||||||||||||||| || || |||||||||||||||||||||||||
Sbjct 1137 TTCAATCTTTCAGAAGTTTATAGAAAAGTCCAAGCTCCAAGTTTGGAATAGGTTTCAACA 1196
Query 1333 TAGTGGGTTCTGGCGGCAATTGACGGTTCGAGAGGGGAGAAAACCCGGCGTGTTTTCAAA 1392
||||||||||||||| || |||||||||||||| ||||||||||||||||||||||||||
Sbjct 1197 TAGTGGGTTCTGGCGACAGTTGACGGTTCGAGAAGGGAGAAAACCCGGCGTGTTTTCAAA 1256
Query 1393 TGATGAAGATGCTATTACAAGAATCGCGGAGGTTATGCTTATGGTTCAGGTTTGTTTAAC 1452
|||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||
Sbjct 1257 TGATGAAGATGCTATTACAAGAATTGCGGAGGTTATGCTTATTGTTCAGGTTTGTTTAAC 1316
Query 1453 TGGTTCTGATGAGGCAGAAGTGGCCACTGAGTTTGAAGAATTGGCGAAAGCGTTTGCTGA 1512
|| |||||| |||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1317 TGATTCTGACGAGGCAGAAGTGGCCACTGAGTTTGAAGAAATGGCGAAAGCGTTTGCTGA 1376
Query 1513 AGGAGCTAGAGCAAGCTCTCCTACTCTTCCTCTGACTGTATTAGTTGTTCAGAATCACTC 1572
||||||||||||||||||||| |||||||| ||||||||||||||||| |||||||||||
Sbjct 1377 AGGAGCTAGAGCAAGCTCTCCAACTCTTCCCCTGACTGTATTAGTTGTCCAGAATCACTC 1436
Query 1573 AGGAATATCAAATGTTGCACCACCTGATGCTCCACTGCAAGTGCTGGCTATTCCAAT-TT 1631
|||||||||||||||||||||||| ||| ||||||| ||||||||| |||||||||| ||
Sbjct 1437 AGGAATATCAAATGTTGCACCACCCGATTCTCCACTACAAGTGCTGCCTATTCCAATGTT 1496
Query 1632 CAGATAATGGGACAGATCAGGAGCAAACCACCAATGTCTTGACTGAAGCTCGGATTCATG 1691
||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1497 -AGATAATGGGACAAATCAGGAGCAAACCACCAATGTATTGACTGAAGCTCGGATTCATG 1555
Query 1692 ATCACATTAACAACCTTCGGTTCAGCATATCCCCAACAGCATTTTTTCAGGTTAATACCG 1751
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1556 ATCATATTAACAACCTTCGGTTCAGCATATCCCCAACAGCATTTTTTCAGGTTAATACCG 1615
Query 1752 TCACCGCAGAGAAGTTATACTCAATTGCTGGAGACTGGGCTGACCTTGGTCCCGACACTT 1811
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1616 TCACCGCAGAGAAGTTATACACAATTGCTGGAGACTGGGCTGACCTTGGTCCCGACACTT 1675
Query 1812 TGCTCTTCGATGTATGCTGTGGAACTGGAACAATTGGGCTTACACTGGCACATCGTGTTG 1871
| |||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||
Sbjct 1676 TACTCTTCGATGTATGCTGTGGAACTGGAACAATCGGGCTTACACTGGCACATCTTGTTG 1735
Query 1872 GCATGGTAATTGGCATAGAAATGAATGCTTCGGCTGTAGCAGATGCCGAACGGAATGCAA 1931
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1736 GCATGGTAATTGGCATAGAAATGAATGCTTCGGCTGTAGCAGATGCCGAACGGAATGCAA 1795
Query 1932 CGATCAATGGCAT----AA--GC-A----A-CTG--C-AA-G--TTCA-TCTG-C--T-- 1967
||||||||||||| || || | | ||| | || | | || | || | |
Sbjct 1796 CGATCAATGGCATAAGCAACTGCAAGTTCATCTGCTCAAAGGCATGCATTTTGACAATAA 1855
Query 1968 CA-A--AGGCAGAGGATGTTATGAGCTCTCTACTTAAACAGTACCTAGATGTGACTCAAA 2024
|| | |||||| ||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1856 CATATCTCGCAGAGAATGTTATGAGCTCTCTACTTAAACAGTACCTAGATGTGACTGAAA 1915
Query 2025 TGGAAGAAGCTAAGCCTCTAAGTAATGCTAACGATGATCTCAACAAACAAATTCCCTCAA 2084
||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||
Sbjct 1916 TGGAAGAAGCTAAGCCTCTAAGTAATGCTAACGATGATCTCGACAAACAAATTTCCTCAA 1975
Query 2085 CAGAAGAAATGACAAACTCAGAGCATGTAGCTGATCAAAACCTACCTCCTTCAAACACTC 2144
||||||||||| |||||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct 1976 CAGAAGAAATGTCAAACTCAGAGCATGTAGCTGATCAAAACCTACCTCCTACAAACTCTC 2035
Query 2145 AAGTGGAAGAACTTCAAGACAATGAGCAGAAGG--A-TTCCTCGTCCTTAGAACCGGAAA 2201
||| ||||| |||||| ||||||||||||||| | |||||||||| ||||||| ||||
Sbjct 2036 GAGTAGAAGACCTTCAAAACAATGAGCAGAAGGATATTTCCTCGTCCGTAGAACCCGAAA 2095
Query 2202 AAACTACAAAACCACAGTTCAAAAATGTGGTTGCTATAGTCGATCCACCTCGCTCTGGAC 2261
|| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 2096 AATCTACAAAACCACAGTTCAAAAATGTGGTTGCTATAGTCGATCCACCTCGTTCTGGAC 2155
Query 2262 TTCATCCAGCTGTAATCAAAGCTCTAAGAACCCATCCCCGGTTAAAGAGACTTGTGTACA 2321
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2156 TTCATCCAGCTGTAATCAAAGCTCTAAGAACCCATCCCCGGTTAAAGAGACTTGTGTACA 2215
Query 2322 TTTCGTGCAACCCTGAAACGCTAGTGGCAAACGCGATAGAGCTTTGCACGCCATCTTTTG 2381
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2216 TTTCGTGCAACCCTGAAACGCTAGTGGCAAACGCGATAGAGCTTTGCACGCCATCTTTTG 2275
Query 2382 ATGAACCGGATAGAGGAAACAAAAATTACAGAGGGCGCAAGAAAATAGGCATTGCCGCTT 2441
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2276 ATGAAGCGGATAGAGGAAACAAAAATTACAGAGGGCGCAAGAAAATAGGCATTGCCGCTT 2335
Query 2442 TGGCTCGACATAGAGCCAAGTCAATGCCAACTTCTGAGGCTTTTAGACCTGTCAAAGCAA 2501
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 2336 TGGCTCGACATAGAGCCAAGTCAATGCCAACTTCTGAGGCTTTTAGACCTGTCAAAGCCA 2395
Query 2502 TGGCCGTTGACCTTTTCCCCCACACTGACCACTGCGAAATGGTAATGCTCCTTGAGAGGT 2561
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 2396 TGGCCGTTGACCTTTTTCCCCACACTGACCACTGCGAAATGGTAATGCTCCTTGAGAGGT 2455
Query 2562 AA 2563
||
Sbjct 2456 AA 2457
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 101548593170
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5