BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G28460.1 Length=2302 Score E Sequences producing significant alignments: (Bits) Value Ahg900472 jgi|Araly1|900472|Al_scaffold_0004_1122 1059 0.0 Ahg473128 jgi|Araly1|473128|fgenesh2_kg.1__3082__AT1G29179.1 516 3e-145 Ahg952121 jgi|Araly1|952121|scaffold_38300003.1 366 3e-100 > Ahg900472 jgi|Araly1|900472|Al_scaffold_0004_1122 Length=1083 Score = 1059 bits (573), Expect = 0.0 Identities = 697/755 (92%), Gaps = 15/755 (2%) Strand=Plus/Plus Query 131 ATGTCTCCCGC-AAAACAAATAAGATTTGATCTTGATTGGGTTGGTGAAAAGAGGATGAA 189 ||||||||||| ||| | || |||||||||||||||||||||| ||||||||||||||| Sbjct 1 ATGTCTCCCGCGAAATC-TATGAGATTTGATCTTGATTGGGTTGATGAAAAGAGGATGAA 59 Query 190 TTCTTTCATTACTAAAGTAATGTCTCTCGTCAGCTCAATGGATTTGGATTTGCAGCCGAA 249 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 60 TTCTTTCATTACTAAAGTAATGTCTCTCGTCAGCTTAATGGATTTGGATTTGCAGCCGAA 119 Query 250 GCCGGAGTCGGAGTTCATGTCACTCACTACTCAAAT-ATTCTCTCTACTCCACTCTATGG 308 |||||||||||||||||||||||||||||||||| | ||| ||||||||||||||||| | Sbjct 120 GCCGGAGTCGGAGTTCATGTCACTCACTACTCAAGTAATT-TCTCTACTCCACTCTATCG 178 Query 309 ATTCGGATTCCATGCCGAAGCCGCTCTCAAATCTCATCTCACTCCTTTCTCAAGGAAACT 368 ||| |||||||||||||||||||| ||||||||||||||||| |||||||||||||||| Sbjct 179 ATTTAGATTCCATGCCGAAGCCGCTGTCAAATCTCATCTCACTTCTTTCTCAAGGAAACT 238 Query 369 TTGACCATAATACCGACTTCAGGTTATTCTTTCGTCAAACTATGGCACTCGAGCCAGAGC 428 |||||||||||||||||||||||||||||||||||||||| || ||||||||||| |||| Sbjct 239 TTGACCATAATACCGACTTCAGGTTATTCTTTCGTCAAACAATAGCACTCGAGCCGGAGC 298 Query 429 CAATATTTATGTCACTCATCTATCAAATATTCTCCCTAGTAATATCTATGAATACTAAGA 488 |||| ||| |||||||||||||||||||||||||||| ||||||||||||||| ||||| Sbjct 299 CAATCTTTGTGTCACTCATCTATCAAATATTCTCCCTCGTAATATCTATGAATTTTAAGA 358 Query 489 GGGATAAGCTTATTTCCTTATGTCCTCAAGCATGCGTGGTTTTGGGTAATAATGGGAAT- 547 |||| |||||||||||||||||||||||||||||||| || |||||||||||| ||||| Sbjct 359 GGGAGAAGCTTATTTCCTTATGTCCTCAAGCATGCGTAGTATTGGGTAATAAT-GGAATA 417 Query 548 TTTGAAGTGATCGT---TAAAAAACAAGAAGGTCAAG-CTCATAAGGGCAAAGCAATCCC 603 ||||| |||||||| |||| || ||||||| | || |||| ||| ||||||||||| Sbjct 418 TTTGATGTGATCGTACGTAAACAAGAAGAAGGGC-AGTTTCATCGGGGTAAAGCAATCCC 476 Query 604 GTGGAGTAGAGATAGCAAGTGGGAATGTCTTCCTTTTAACTGGAAGACATATTGGTCTAG 663 |||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||| Sbjct 477 GTGGAGTAGAGATAGCAAGTGGGAATGTCTCCCTTTTAACTGGAAGACATACTGGTCTAC 536 Query 664 TGGAGATGATGTTACACATTTTCGATGCCGAAACTGCGATGGCGACAACCATAAAGAATA 723 |||||| |||||||| ||||||||||| |||| |||||||||||||||||||||||||| Sbjct 537 TGGAGAAGATGTTACTCATTTTCGATGTAGAAATTGCGATGGCGACAACCATAAAGAATA 596 Query 724 TGAA-AAGGCTCCGGTTGAGATCAAACACTCTCTTCATCGGAAACATTCTCTTCAGCTTG 782 | || ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 597 T-AACAAGGCTCCGGTTGAGATCAAACACTCTCTTCATCGGAAACATTCTCTTCAGCTTG 655 Query 783 TCTTGTTGGATGAGAGTAGTTATACGAGGGTATGCTATTGTTGCGATGAAGATCTCAAAA 842 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 656 TCTTGTTGGATGAGAGTAGTTATACGAGGGTATGCTATTGTTGTGATGAAGATCTCAAAA 715 Query 843 GGATGTTTTATTATTGTCG-GACTTGCGATTTTGG 876 |||||| |||||||| | | ||||||||||||| Sbjct 716 AGATGTTCTATTATTGCCACG-CTTGCGATTTTGG 749 Score = 348 bits (188), Expect = 1e-94 Identities = 219/234 (94%), Gaps = 2/234 (1%) Strand=Plus/Plus Query 2007 GGGACTTACACATGAGGCCCGGTTCAACGTGGATCACCTTTGGTAACAAGGTAGATGTTC 2066 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 845 GGGACTTACACATGAGGCCCGGTTCAACGTGGATCACCTTTGGTAACAAGGTAGATGTTC 904 Query 2067 TACACAACAGTAACCGTATGTCTCGATCTATTTGCTCCTATTGTGTGAAACACTGTCCAT 2126 ||| ||||| ||| ||||||||||||||||||||||||| ||||| ||| ||||||||| Sbjct 905 TACCCAACAATAATCGTATGTCTCGATCTATTTGCTCCTTTTGTGCGAAGCACTGTCCAC 964 Query 2127 ATAAGATAGTTTACATGTGTTCTGGATTGATATTATGTTCCCAAGGTTGTGTAGTGCGTA 2186 |||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 965 ATAAAATAGTTTACATGTGTTCTGGATTGATATTATGTTCCCAAAGTTGTGTAGTGCGTA 1024 Query 2187 GCATATTGCAGAAACG-TGGACGTTACAGAGAGTTAGAATTTTTGAGTAGATAT 2239 |||||||||| ||||| ||| |||||||||||||||| ||||||||||| ||| Sbjct 1025 GCATATTGCATAAACGCTGG-CGTTACAGAGAGTTAGCTTTTTTGAGTAGGTAT 1077 Score = 159 bits (86), Expect = 6e-38 Identities = 94/98 (96%), Gaps = 0/98 (0%) Strand=Plus/Plus Query 1553 GGATTTGATGGTGTTATAAACTATTATAACGATAAATGCTCAGCTTGTATTGGACTGTGC 1612 |||| ||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 748 GGATATGATGGTATTATAAACTATTATAACGATAAATGCTCAGCTTGTATTGGATTGTGC 807 Query 1613 AAAGGTGGTTTCTTCTATGAGTGTGGTAAACAAGGATG 1650 |||||||||||||||||||||||||||||| ||||||| Sbjct 808 AAAGGTGGTTTCTTCTATGAGTGTGGTAAAGAAGGATG 845 > Ahg473128 jgi|Araly1|473128|fgenesh2_kg.1__3082__AT1G29179.1 Length=1699 Score = 516 bits (279), Expect = 3e-145 Identities = 562/694 (81%), Gaps = 38/694 (5%) Strand=Plus/Plus Query 820 TTGTTGCGATGAAGATCTC-AAAAGGATGTTTTATTATTG-TCGGACTTGCGATTTTGGT 877 |||||| ||||| |||||| |||| ||| || || ||||| ||||| ||| |||| || | Sbjct 1017 TTGTTGTGATGAGGATCTCGAAAA-GATATTCTACTATTGCTCGGA-TTGTGATTATGCT 1074 Query 878 CTTAATTTCGTTTGTGCGAAGAAAGAAGCAATCTTATATATAGACCAACCGAAGTGGCAT 937 | ||| | | ||||||| ||||| | || |||||||||||||||| ||||| |||||| Sbjct 1075 ATGAATATAGCTTGTGCGGAGAAACCACCAGTCTTATATATAGACCATCCGAATTGGCAT 1134 Query 938 GAGCATACACTTGCGT-TGTTT-CTAAGA-AAGAC-TTCGTTAACTTGCAACG-CATGTG 992 | ||||||||||| | ||||| || ||| ||| | ||| ||||||||||| | | || | Sbjct 1135 AATCATACACTTGC-TCTGTTTCCT-AGACAAG-CTTTC-TTAACTTGCAATGTC-TGCG 1189 Query 993 GCTTATCAC-ATTCAAGTTGTCCTCTCTATATGTGTCCCCCTTGTGACTTTGTGATCCAT 1051 | | | | ||||||| | |||| |||||||||||||||||||||| |||||| ||||| Sbjct 1190 CCCTGGC-CGATTCAAGCTCTCCTATCTATATGTGTCCCCCTTGTGATTTTGTGGTCCAT 1248 Query 1052 -AAGAGTTGTATCAGCTTACCACGTCTCATAAGGATATCACGACATTTCCATCGTATAGC 1110 || || ||||||| |||||||||| ||||||||||||| || ||| ||||||||| | Sbjct 1249 CAA-AGCTGTATCAACTTACCACGTGTCATAAGGATATCTCGCCATCCCCATCGTATCTC 1307 Query 1111 TTATACCCCTTCT-TTTGATGAAGGA-GATTGGTCTTGTAGTGTTTGTCGC-AAGAAGAT 1167 || |||||||| | || || || | ||| | |||||| ||||||||||| || ||||| Sbjct 1308 TTTTACCCCTT-TGTTCGACCAA-CATGATAGATCTTGTGGTGTTTGTCGCGAA-AAGAT 1364 Query 1168 CGACAATGATTACGGAGGCTATGT-TTGTACCAA--A-GGTTGTTCGTATGCG-GCTCAT 1222 |||||| ||||| || || ||| | ||| | ||| | | ||||||||||| | || ||| Sbjct 1365 CGACAACGATTATGGGGGTTAT-TCTTGCATCAACGACGATTGTTCGTATG-GAGCACAT 1422 Query 1223 TCAAAATGTGCCACTCAGAGCAATGTGTGGGATGGTATAGAACTTGAGGGAGAGCCAGAA 1282 || | ||||||||| ||||| |||||||||||||| ||||| ||||| |||| | |||| Sbjct 1423 TCGAGATGTGCCACACAGAGAAATGTGTGGGATGGCATAGAGCTTGAAGGAGTGTTAGAA 1482 Query 1283 GATATTGAAGAAGAAGTGCTTCCTCCGTTTTTGGA-GATAAGTGATGGAATCATACAACA 1341 || |||||||||||| | || |||||| | || |||||||||||||||||||||||| Sbjct 1483 GACATTGAAGAAGAA--G-TTGAGCCGTTTGT-GACGATAAGTGATGGAATCATACAACA 1538 Query 1342 TTTTAGTCATCAGCAACATCATATGAAACTTGACGAGAACACGGGCAGAGATTACGACGA 1401 |||||||||||| ||||||||| ||| |||||| ||||||| | |||||||||||| || Sbjct 1539 TTTTAGTCATCAACAACATCATTTGAGACTTGATGAGAACAAAGACAGAGATTACGATGA 1598 Query 1402 GAATAAGGAGTGTGAAGCATGCATCAGGCCAATCTATTTCGGTAATTTCTACTCTTGTTT 1461 |||| | ||||||| |||||||||| ||| |||||||||||||| ||||||||||| | Sbjct 1599 CAATATGCAGTGTGATGCATGCATCACGCCCATCTATTTCGGTAACCTCTACTCTTGTAT 1658 Query 1462 GGAATGT-GATTTTATTCTTCACGAAGAGTGTGC 1494 | ||||| | || |||||||||||||| ||||| Sbjct 1659 GCAATGTAGCTTC-ATTCTTCACGAAGAATGTGC 1691 > Ahg952121 jgi|Araly1|952121|scaffold_38300003.1 Length=799 Score = 366 bits (198), Expect = 3e-100 Identities = 378/462 (82%), Gaps = 23/462 (5%) Strand=Plus/Plus Query 70 TCTCGACATCTCTATGGATTCGA-AGACAGAGTCGAAGCTCCTATCGCTCACATCTCAAA 128 ||||| || |||||||||||| | ||| |||||||||||| |||| ||||||||||||| Sbjct 8 TCTCGGCAACTCTATGGATTC-AGTGACGGAGTCGAAGCTCGTATCACTCACATCTCAAA 66 Query 129 TAATGTCTCCC--GCAAAACAAATAAGATTTGATCTT-GATTGGGTTGGTGAAAAGAGGA 185 || | |||||| | || | | || || ||| || |||||| || ||| | || | Sbjct 67 TACTTTCTCCCATG-GAATCTACGAA-ATCCGAT-TTGGATTGGTTTACTGATAGGAACA 123 Query 186 TGAAT-TCTTTCATTACTAAAGTAATGTCTCTCGTCAGCTCAATGGATTTGGATTTGCAG 244 | || ||||||||| | ||||||||||||||||||||||||||||||||||||||||| Sbjct 124 T-CATATCTTTCATTGTTCAAGTAATGTCTCTCGTCAGCTCAATGGATTTGGATTTGCAG 182 Query 245 CCGAAGCCGGAGTCGGAGTTCATGTCACTCACTACTCAAATATTCTCTCTACTCCACTCT 304 |||||||| ||||||||||| ||||||||||||||||||||| ||||||||||||||||| Sbjct 183 CCGAAGCCAGAGTCGGAGTTTATGTCACTCACTACTCAAATAATCTCTCTACTCCACTCT 242 Query 305 ATGGATTCGGATTC-CATGCCGAAGCCGCTCTCAAATCTCATCTCACTCCTTTCTCAAGG 363 || ||| |||||| || |||||| ||| ||| ||||||| | | || |||||||| Sbjct 243 ATCCATTTGGATTCTCAA-CCGAAGATGCTGTCAGATCTCATATTATTCATTTCTCAAAA 301 Query 364 AAACTTTGACCATAATACCGACTTCAGGTTATTCTTTC-GTCAAACTAT-GGCACTCGAG 421 ||||||||| ||| | | |||||||| ||| | ||| ||| ||| || |||||||||| Sbjct 302 AAACTTTGAGCATT-T-C-GACTTCAGCTTAA-CGTTCAGTCGAAC-ATTGGCACTCGAG 356 Query 422 CCAGAGCCAA-TATTTATGTCACTCATCTATCAAATATTCTCCCTAGTAATATCTATGAA 480 || ||||| ||| ||||||||||| | ||||||||||||||| || || || ||||| Sbjct 357 CCGGAGCCGGCTATC-ATGTCACTCATATTTCAAATATTCTCCCTCGTCATCTCCATGAA 415 Query 481 TACT-AAGAGGGATAAGCTTATTTCCTTATGTCCTCAAGCAT 521 | || ||||| || |||||||||||||||||||||||||||| Sbjct 416 T-CTTAAGAGAGAGAAGCTTATTTCCTTATGTCCTCAAGCAT 456 Score = 279 bits (151), Expect = 5e-74 Identities = 232/270 (86%), Gaps = 10/270 (4%) Strand=Plus/Plus Query 594 AAGCAATCCCGTGGAGTAGAGATAGCAAGTGGGAATGTCTTCCTTTTAACTGGAAGACAT 653 |||| ||| ||| |||| ||||||||||||||| ||||||||||| ||||||||||||| Sbjct 493 AAGCTATCTCGTATAGTATAGATAGCAAGTGGGAGTGTCTTCCTTTAAACTGGAAGACAT 552 Query 654 ATTGGTCTAGTGGAGATGATGTTACAC-ATTTTCGATGCCGAAACTGCGATGG-CGACAA 711 | ||| ||| ||||| | |||| | |||||||||| |||| ||||| || || || Sbjct 553 ACTGGCCTACAGGAGAAGGCATTAC-CTATTTTCGATGTAGAAATTGCGAAGGCCG-GAA 610 Query 712 CCATAAAGAATATGAA-AAGGCTCCGGTTGAGATCAAACACTCTCTTCATCGGAAACATT 770 ||||||||||||| || ||||||||||| ||||||||||||||||||||||||||||||| Sbjct 611 CCATAAAGAATAT-AACAAGGCTCCGGTAGAGATCAAACACTCTCTTCATCGGAAACATT 669 Query 771 CTCTTCAGCTTGTCTTGTTG-GATGAG-AGTAGTTATACGAGGGTATGCTATTGTTGCGA 828 ||||||||||||||||||| | |||| | | |||||||||||| |||||||| || || Sbjct 670 CTCTTCAGCTTGTCTTGTTATG-TGAGGAAAA-TTATACGAGGGTTTGCTATTGCTGTGA 727 Query 829 TGAAGATCTCAAAAGGATGTTTTATTATTG 858 ||||||||||| |||||||||||||||||| Sbjct 728 TGAAGATCTCAGAAGGATGTTTTATTATTG 757 Score = 62.1 bits (33), Expect = 2e-08 Identities = 38/40 (95%), Gaps = 2/40 (5%) Strand=Plus/Plus Query 921 ACCAACCGAAGTGGCATGAGCATACACTTGCGT-TGTTTC 959 ||||||||||||||||||||||||||||||| | |||||| Sbjct 761 ACCAACCGAAGTGGCATGAGCATACACTTGC-TCTGTTTC 799 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 86693397620 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5