BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G28460.1
Length=2302
Score E
Sequences producing significant alignments: (Bits) Value
Ahg900472 jgi|Araly1|900472|Al_scaffold_0004_1122 1059 0.0
Ahg473128 jgi|Araly1|473128|fgenesh2_kg.1__3082__AT1G29179.1 516 3e-145
Ahg952121 jgi|Araly1|952121|scaffold_38300003.1 366 3e-100
> Ahg900472 jgi|Araly1|900472|Al_scaffold_0004_1122
Length=1083
Score = 1059 bits (573), Expect = 0.0
Identities = 697/755 (92%), Gaps = 15/755 (2%)
Strand=Plus/Plus
Query 131 ATGTCTCCCGC-AAAACAAATAAGATTTGATCTTGATTGGGTTGGTGAAAAGAGGATGAA 189
||||||||||| ||| | || |||||||||||||||||||||| |||||||||||||||
Sbjct 1 ATGTCTCCCGCGAAATC-TATGAGATTTGATCTTGATTGGGTTGATGAAAAGAGGATGAA 59
Query 190 TTCTTTCATTACTAAAGTAATGTCTCTCGTCAGCTCAATGGATTTGGATTTGCAGCCGAA 249
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 60 TTCTTTCATTACTAAAGTAATGTCTCTCGTCAGCTTAATGGATTTGGATTTGCAGCCGAA 119
Query 250 GCCGGAGTCGGAGTTCATGTCACTCACTACTCAAAT-ATTCTCTCTACTCCACTCTATGG 308
|||||||||||||||||||||||||||||||||| | ||| ||||||||||||||||| |
Sbjct 120 GCCGGAGTCGGAGTTCATGTCACTCACTACTCAAGTAATT-TCTCTACTCCACTCTATCG 178
Query 309 ATTCGGATTCCATGCCGAAGCCGCTCTCAAATCTCATCTCACTCCTTTCTCAAGGAAACT 368
||| |||||||||||||||||||| ||||||||||||||||| ||||||||||||||||
Sbjct 179 ATTTAGATTCCATGCCGAAGCCGCTGTCAAATCTCATCTCACTTCTTTCTCAAGGAAACT 238
Query 369 TTGACCATAATACCGACTTCAGGTTATTCTTTCGTCAAACTATGGCACTCGAGCCAGAGC 428
|||||||||||||||||||||||||||||||||||||||| || ||||||||||| ||||
Sbjct 239 TTGACCATAATACCGACTTCAGGTTATTCTTTCGTCAAACAATAGCACTCGAGCCGGAGC 298
Query 429 CAATATTTATGTCACTCATCTATCAAATATTCTCCCTAGTAATATCTATGAATACTAAGA 488
|||| ||| |||||||||||||||||||||||||||| ||||||||||||||| |||||
Sbjct 299 CAATCTTTGTGTCACTCATCTATCAAATATTCTCCCTCGTAATATCTATGAATTTTAAGA 358
Query 489 GGGATAAGCTTATTTCCTTATGTCCTCAAGCATGCGTGGTTTTGGGTAATAATGGGAAT- 547
|||| |||||||||||||||||||||||||||||||| || |||||||||||| |||||
Sbjct 359 GGGAGAAGCTTATTTCCTTATGTCCTCAAGCATGCGTAGTATTGGGTAATAAT-GGAATA 417
Query 548 TTTGAAGTGATCGT---TAAAAAACAAGAAGGTCAAG-CTCATAAGGGCAAAGCAATCCC 603
||||| |||||||| |||| || ||||||| | || |||| ||| |||||||||||
Sbjct 418 TTTGATGTGATCGTACGTAAACAAGAAGAAGGGC-AGTTTCATCGGGGTAAAGCAATCCC 476
Query 604 GTGGAGTAGAGATAGCAAGTGGGAATGTCTTCCTTTTAACTGGAAGACATATTGGTCTAG 663
|||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||
Sbjct 477 GTGGAGTAGAGATAGCAAGTGGGAATGTCTCCCTTTTAACTGGAAGACATACTGGTCTAC 536
Query 664 TGGAGATGATGTTACACATTTTCGATGCCGAAACTGCGATGGCGACAACCATAAAGAATA 723
|||||| |||||||| ||||||||||| |||| ||||||||||||||||||||||||||
Sbjct 537 TGGAGAAGATGTTACTCATTTTCGATGTAGAAATTGCGATGGCGACAACCATAAAGAATA 596
Query 724 TGAA-AAGGCTCCGGTTGAGATCAAACACTCTCTTCATCGGAAACATTCTCTTCAGCTTG 782
| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 597 T-AACAAGGCTCCGGTTGAGATCAAACACTCTCTTCATCGGAAACATTCTCTTCAGCTTG 655
Query 783 TCTTGTTGGATGAGAGTAGTTATACGAGGGTATGCTATTGTTGCGATGAAGATCTCAAAA 842
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 656 TCTTGTTGGATGAGAGTAGTTATACGAGGGTATGCTATTGTTGTGATGAAGATCTCAAAA 715
Query 843 GGATGTTTTATTATTGTCG-GACTTGCGATTTTGG 876
|||||| |||||||| | | |||||||||||||
Sbjct 716 AGATGTTCTATTATTGCCACG-CTTGCGATTTTGG 749
Score = 348 bits (188), Expect = 1e-94
Identities = 219/234 (94%), Gaps = 2/234 (1%)
Strand=Plus/Plus
Query 2007 GGGACTTACACATGAGGCCCGGTTCAACGTGGATCACCTTTGGTAACAAGGTAGATGTTC 2066
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 845 GGGACTTACACATGAGGCCCGGTTCAACGTGGATCACCTTTGGTAACAAGGTAGATGTTC 904
Query 2067 TACACAACAGTAACCGTATGTCTCGATCTATTTGCTCCTATTGTGTGAAACACTGTCCAT 2126
||| ||||| ||| ||||||||||||||||||||||||| ||||| ||| |||||||||
Sbjct 905 TACCCAACAATAATCGTATGTCTCGATCTATTTGCTCCTTTTGTGCGAAGCACTGTCCAC 964
Query 2127 ATAAGATAGTTTACATGTGTTCTGGATTGATATTATGTTCCCAAGGTTGTGTAGTGCGTA 2186
|||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 965 ATAAAATAGTTTACATGTGTTCTGGATTGATATTATGTTCCCAAAGTTGTGTAGTGCGTA 1024
Query 2187 GCATATTGCAGAAACG-TGGACGTTACAGAGAGTTAGAATTTTTGAGTAGATAT 2239
|||||||||| ||||| ||| |||||||||||||||| ||||||||||| |||
Sbjct 1025 GCATATTGCATAAACGCTGG-CGTTACAGAGAGTTAGCTTTTTTGAGTAGGTAT 1077
Score = 159 bits (86), Expect = 6e-38
Identities = 94/98 (96%), Gaps = 0/98 (0%)
Strand=Plus/Plus
Query 1553 GGATTTGATGGTGTTATAAACTATTATAACGATAAATGCTCAGCTTGTATTGGACTGTGC 1612
|||| ||||||| ||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 748 GGATATGATGGTATTATAAACTATTATAACGATAAATGCTCAGCTTGTATTGGATTGTGC 807
Query 1613 AAAGGTGGTTTCTTCTATGAGTGTGGTAAACAAGGATG 1650
|||||||||||||||||||||||||||||| |||||||
Sbjct 808 AAAGGTGGTTTCTTCTATGAGTGTGGTAAAGAAGGATG 845
> Ahg473128 jgi|Araly1|473128|fgenesh2_kg.1__3082__AT1G29179.1
Length=1699
Score = 516 bits (279), Expect = 3e-145
Identities = 562/694 (81%), Gaps = 38/694 (5%)
Strand=Plus/Plus
Query 820 TTGTTGCGATGAAGATCTC-AAAAGGATGTTTTATTATTG-TCGGACTTGCGATTTTGGT 877
|||||| ||||| |||||| |||| ||| || || ||||| ||||| ||| |||| || |
Sbjct 1017 TTGTTGTGATGAGGATCTCGAAAA-GATATTCTACTATTGCTCGGA-TTGTGATTATGCT 1074
Query 878 CTTAATTTCGTTTGTGCGAAGAAAGAAGCAATCTTATATATAGACCAACCGAAGTGGCAT 937
| ||| | | ||||||| ||||| | || |||||||||||||||| ||||| ||||||
Sbjct 1075 ATGAATATAGCTTGTGCGGAGAAACCACCAGTCTTATATATAGACCATCCGAATTGGCAT 1134
Query 938 GAGCATACACTTGCGT-TGTTT-CTAAGA-AAGAC-TTCGTTAACTTGCAACG-CATGTG 992
| ||||||||||| | ||||| || ||| ||| | ||| ||||||||||| | | || |
Sbjct 1135 AATCATACACTTGC-TCTGTTTCCT-AGACAAG-CTTTC-TTAACTTGCAATGTC-TGCG 1189
Query 993 GCTTATCAC-ATTCAAGTTGTCCTCTCTATATGTGTCCCCCTTGTGACTTTGTGATCCAT 1051
| | | | ||||||| | |||| |||||||||||||||||||||| |||||| |||||
Sbjct 1190 CCCTGGC-CGATTCAAGCTCTCCTATCTATATGTGTCCCCCTTGTGATTTTGTGGTCCAT 1248
Query 1052 -AAGAGTTGTATCAGCTTACCACGTCTCATAAGGATATCACGACATTTCCATCGTATAGC 1110
|| || ||||||| |||||||||| ||||||||||||| || ||| ||||||||| |
Sbjct 1249 CAA-AGCTGTATCAACTTACCACGTGTCATAAGGATATCTCGCCATCCCCATCGTATCTC 1307
Query 1111 TTATACCCCTTCT-TTTGATGAAGGA-GATTGGTCTTGTAGTGTTTGTCGC-AAGAAGAT 1167
|| |||||||| | || || || | ||| | |||||| ||||||||||| || |||||
Sbjct 1308 TTTTACCCCTT-TGTTCGACCAA-CATGATAGATCTTGTGGTGTTTGTCGCGAA-AAGAT 1364
Query 1168 CGACAATGATTACGGAGGCTATGT-TTGTACCAA--A-GGTTGTTCGTATGCG-GCTCAT 1222
|||||| ||||| || || ||| | ||| | ||| | | ||||||||||| | || |||
Sbjct 1365 CGACAACGATTATGGGGGTTAT-TCTTGCATCAACGACGATTGTTCGTATG-GAGCACAT 1422
Query 1223 TCAAAATGTGCCACTCAGAGCAATGTGTGGGATGGTATAGAACTTGAGGGAGAGCCAGAA 1282
|| | ||||||||| ||||| |||||||||||||| ||||| ||||| |||| | ||||
Sbjct 1423 TCGAGATGTGCCACACAGAGAAATGTGTGGGATGGCATAGAGCTTGAAGGAGTGTTAGAA 1482
Query 1283 GATATTGAAGAAGAAGTGCTTCCTCCGTTTTTGGA-GATAAGTGATGGAATCATACAACA 1341
|| |||||||||||| | || |||||| | || ||||||||||||||||||||||||
Sbjct 1483 GACATTGAAGAAGAA--G-TTGAGCCGTTTGT-GACGATAAGTGATGGAATCATACAACA 1538
Query 1342 TTTTAGTCATCAGCAACATCATATGAAACTTGACGAGAACACGGGCAGAGATTACGACGA 1401
|||||||||||| ||||||||| ||| |||||| ||||||| | |||||||||||| ||
Sbjct 1539 TTTTAGTCATCAACAACATCATTTGAGACTTGATGAGAACAAAGACAGAGATTACGATGA 1598
Query 1402 GAATAAGGAGTGTGAAGCATGCATCAGGCCAATCTATTTCGGTAATTTCTACTCTTGTTT 1461
|||| | ||||||| |||||||||| ||| |||||||||||||| ||||||||||| |
Sbjct 1599 CAATATGCAGTGTGATGCATGCATCACGCCCATCTATTTCGGTAACCTCTACTCTTGTAT 1658
Query 1462 GGAATGT-GATTTTATTCTTCACGAAGAGTGTGC 1494
| ||||| | || |||||||||||||| |||||
Sbjct 1659 GCAATGTAGCTTC-ATTCTTCACGAAGAATGTGC 1691
> Ahg952121 jgi|Araly1|952121|scaffold_38300003.1
Length=799
Score = 366 bits (198), Expect = 3e-100
Identities = 378/462 (82%), Gaps = 23/462 (5%)
Strand=Plus/Plus
Query 70 TCTCGACATCTCTATGGATTCGA-AGACAGAGTCGAAGCTCCTATCGCTCACATCTCAAA 128
||||| || |||||||||||| | ||| |||||||||||| |||| |||||||||||||
Sbjct 8 TCTCGGCAACTCTATGGATTC-AGTGACGGAGTCGAAGCTCGTATCACTCACATCTCAAA 66
Query 129 TAATGTCTCCC--GCAAAACAAATAAGATTTGATCTT-GATTGGGTTGGTGAAAAGAGGA 185
|| | |||||| | || | | || || ||| || |||||| || ||| | || |
Sbjct 67 TACTTTCTCCCATG-GAATCTACGAA-ATCCGAT-TTGGATTGGTTTACTGATAGGAACA 123
Query 186 TGAAT-TCTTTCATTACTAAAGTAATGTCTCTCGTCAGCTCAATGGATTTGGATTTGCAG 244
| || ||||||||| | |||||||||||||||||||||||||||||||||||||||||
Sbjct 124 T-CATATCTTTCATTGTTCAAGTAATGTCTCTCGTCAGCTCAATGGATTTGGATTTGCAG 182
Query 245 CCGAAGCCGGAGTCGGAGTTCATGTCACTCACTACTCAAATATTCTCTCTACTCCACTCT 304
|||||||| ||||||||||| ||||||||||||||||||||| |||||||||||||||||
Sbjct 183 CCGAAGCCAGAGTCGGAGTTTATGTCACTCACTACTCAAATAATCTCTCTACTCCACTCT 242
Query 305 ATGGATTCGGATTC-CATGCCGAAGCCGCTCTCAAATCTCATCTCACTCCTTTCTCAAGG 363
|| ||| |||||| || |||||| ||| ||| ||||||| | | || ||||||||
Sbjct 243 ATCCATTTGGATTCTCAA-CCGAAGATGCTGTCAGATCTCATATTATTCATTTCTCAAAA 301
Query 364 AAACTTTGACCATAATACCGACTTCAGGTTATTCTTTC-GTCAAACTAT-GGCACTCGAG 421
||||||||| ||| | | |||||||| ||| | ||| ||| ||| || ||||||||||
Sbjct 302 AAACTTTGAGCATT-T-C-GACTTCAGCTTAA-CGTTCAGTCGAAC-ATTGGCACTCGAG 356
Query 422 CCAGAGCCAA-TATTTATGTCACTCATCTATCAAATATTCTCCCTAGTAATATCTATGAA 480
|| ||||| ||| ||||||||||| | ||||||||||||||| || || || |||||
Sbjct 357 CCGGAGCCGGCTATC-ATGTCACTCATATTTCAAATATTCTCCCTCGTCATCTCCATGAA 415
Query 481 TACT-AAGAGGGATAAGCTTATTTCCTTATGTCCTCAAGCAT 521
| || ||||| || ||||||||||||||||||||||||||||
Sbjct 416 T-CTTAAGAGAGAGAAGCTTATTTCCTTATGTCCTCAAGCAT 456
Score = 279 bits (151), Expect = 5e-74
Identities = 232/270 (86%), Gaps = 10/270 (4%)
Strand=Plus/Plus
Query 594 AAGCAATCCCGTGGAGTAGAGATAGCAAGTGGGAATGTCTTCCTTTTAACTGGAAGACAT 653
|||| ||| ||| |||| ||||||||||||||| ||||||||||| |||||||||||||
Sbjct 493 AAGCTATCTCGTATAGTATAGATAGCAAGTGGGAGTGTCTTCCTTTAAACTGGAAGACAT 552
Query 654 ATTGGTCTAGTGGAGATGATGTTACAC-ATTTTCGATGCCGAAACTGCGATGG-CGACAA 711
| ||| ||| ||||| | |||| | |||||||||| |||| ||||| || || ||
Sbjct 553 ACTGGCCTACAGGAGAAGGCATTAC-CTATTTTCGATGTAGAAATTGCGAAGGCCG-GAA 610
Query 712 CCATAAAGAATATGAA-AAGGCTCCGGTTGAGATCAAACACTCTCTTCATCGGAAACATT 770
||||||||||||| || ||||||||||| |||||||||||||||||||||||||||||||
Sbjct 611 CCATAAAGAATAT-AACAAGGCTCCGGTAGAGATCAAACACTCTCTTCATCGGAAACATT 669
Query 771 CTCTTCAGCTTGTCTTGTTG-GATGAG-AGTAGTTATACGAGGGTATGCTATTGTTGCGA 828
||||||||||||||||||| | |||| | | |||||||||||| |||||||| || ||
Sbjct 670 CTCTTCAGCTTGTCTTGTTATG-TGAGGAAAA-TTATACGAGGGTTTGCTATTGCTGTGA 727
Query 829 TGAAGATCTCAAAAGGATGTTTTATTATTG 858
||||||||||| ||||||||||||||||||
Sbjct 728 TGAAGATCTCAGAAGGATGTTTTATTATTG 757
Score = 62.1 bits (33), Expect = 2e-08
Identities = 38/40 (95%), Gaps = 2/40 (5%)
Strand=Plus/Plus
Query 921 ACCAACCGAAGTGGCATGAGCATACACTTGCGT-TGTTTC 959
||||||||||||||||||||||||||||||| | ||||||
Sbjct 761 ACCAACCGAAGTGGCATGAGCATACACTTGC-TCTGTTTC 799
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 86693397620
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5