BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G28480.1
Length=1489
Score E
Sequences producing significant alignments: (Bits) Value
Ahg933171 jgi|Araly1|933171|scaffold_401159.1 1587 0.0
Ahg900542 jgi|Araly1|900542|Al_scaffold_0004_1192 159 4e-38
> Ahg933171 jgi|Araly1|933171|scaffold_401159.1
Length=1082
Score = 1587 bits (859), Expect = 0.0
Identities = 1025/1102 (93%), Gaps = 24/1102 (2%)
Strand=Plus/Plus
Query 190 TCTTGAGATGATTTAG-CCAAACTATGGCAATTGCTTTTGCTCGTGGGTTGCGAAAAGCT 248
|||| ||||||||||| ||||| |||||||||||||||||||||||| || |||||||||
Sbjct 1 TCTTCAGATGATTTAGCCCAAATTATGGCAATTGCTTTTGCTCGTGGATTTCGAAAAGCT 60
Query 249 TCATCTTTTCTTCGATCTTCATATCCACTTCTCATTTCTTCCAGGTTGCTTCCTATAA-G 307
|||||||||||| |||||||||||||| |||||||||||||||||||||||||| || |
Sbjct 61 TCATCTTTTCTTAGATCTTCATATCCAGTTCTCATTTCTTCCAGGTTGCTTCCT-CAATG 119
Query 308 CCAAGAGTTTTATGATTCAACATTGACAT-TTGTTCTACCGACAAGACCAATATGTAGGA 366
||| ||||||||||||||||||| | || || || | | ||||||| |||| |||||
Sbjct 120 CCACGAGTTTTATGATTCAACATCG--ATGTT-ATCAATC-TCAAGACCGATATTTAGGA 175
Query 367 ATTTTAGTCATGGTTATGGTACGGTGAATCTAGTGATATCAGAAGGGAAACCAAAGTTTG 426
| || ||| || |||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 176 A--TT--TCA--GTCATGGTACGGTGAATCTTGTGATATCAGAAGGGAAACCAAAGTTTG 229
Query 427 AAACTAGGGAACTTGATCCTCCAAAGAAGTATAAGTGGTTGACgaaaaagcggttgaagt 486
||||| |||| ||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 230 AAACTCGGGAGCTTGATCCTCCCAAGAAGTATAAGTGGTTGACGAAAAAGCGGTTGAAGT 289
Query 487 tgaagagaaagaaagaaagagaggaaaggaaTGCAGCTAATAGGAAAGACCCGAGGCGAC 546
|||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 290 TGAAAAGAAAGAAAGAAAGAGAGGAAAGGAATGCAGCTAATAGGAAAGACCCGCGGCGAC 349
Query 547 TTACTGTTAAAGGGAAGAAGAAGAAGTTTGTTAATGCAGAGGAAAGAATCAAGTATAAGC 606
||||||||||||| |||||||| |||||||||||||||||||||||||||||||| ||||
Sbjct 350 TTACTGTTAAAGGAAAGAAGAAAAAGTTTGTTAATGCAGAGGAAAGAATCAAGTACAAGC 409
Query 607 TTGAAAAGGCTAAGATCAAAGAAGCATTGCTGATTGAGAGACTTAAACGGTATGAAGTTG 666
|||||||||| |||||||||||||| ||||||||||||| ||| ||||||||||||||||
Sbjct 410 TTGAAAAGGCGAAGATCAAAGAAGCGTTGCTGATTGAGAAACTAAAACGGTATGAAGTTG 469
Query 667 CAAAAGTGCAAGGACCTGAGGTTCGACCTCATGAGATTACCGGGGAAGAACGTTTCTACT 726
| |||||||| ||||||||||||||||| ||||||||||||||||||||||||||||| |
Sbjct 470 CGAAAGTGCAGGGACCTGAGGTTCGACCACATGAGATTACCGGGGAAGAACGTTTCTA-T 528
Query 727 -TGAAGAAAATGGGTCAGAAAAGATCCAATTATGTACCGATTGGTAGAAGAGGAGTATTT 785
||||||||||||||||||||||||| ||||| ||||||||||| ||||||||||| |||
Sbjct 529 CTGAAGAAAATGGGTCAGAAAAGATCTAATTACGTACCGATTGGGAGAAGAGGAGTGTTT 588
Query 786 GGTGGTGTTATTCTGAACATGCATCTGCATTGGAAAAAGCATGAAACTGTTAAGGTTATT 845
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 589 GGTGGTGTTATTCTAAACATGCATCTGCATTGGAAAAAGCATGAAACTGTTAAGGTTATT 648
Query 846 TGCAATAATAGTAAGCCCGGCCAAGTGCAACAATATGCAGAGGAGCTTGCTAAACTGAGT 905
|||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct 649 TGCAATAATAGTAAACCAGGCCAAGTGCAACAATATGCAGAGGAGCTTGCTAAACTGAGT 708
Query 906 GGTGGTGTGCCTGTTAACATAATTGGCGATGATACGATCATATTTTATAGAGGGAAGGGT 965
|||||||||||||||||||| || ||||||||||| ||||||||||||||||||||||||
Sbjct 709 GGTGGTGTGCCTGTTAACATCATCGGCGATGATACAATCATATTTTATAGAGGGAAGGGT 768
Query 966 TATGTGCAGCCACAAGTTATGTCTCCGATCGATACATTATCGAAGAAAAGGGCATATGAA 1025
|||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||
Sbjct 769 TATGTGCAGCCACAAGTTATGTCTCCAATCGATACACTATCGAAGAAAAGGGCATATGAA 828
Query 1026 AAATCGAAGTACGAACAATCTCTTGAATCTGTGAGACATTTTATAGCAATTGCAGAGAAG 1085
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 829 AAATCGAAGTACGAACAATCTCTTGAATCTGTGAGACATTTTATAGCAATTGCAGAGAAG 888
Query 1086 GAACTTGAACTATATTACAGGCATGTTGCTCTCTACGATGACCCGAATAACAGAAACCCT 1145
|||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 889 GAACTTGAGCTATATTACAGGCATGTTGCTCTTTACGATGACCCGAATAACAGAAACCCT 948
Query 1146 CTTTCGATTTTGGATGATTCTCCATCGGAATCACGTCAACACCATGAGAATGAGTTTTTT 1205
|||||||| |||||||||||||||||||||||||||||| ||||||| |||||| ||| |
Sbjct 949 CTTTCGATATTGGATGATTCTCCATCGGAATCACGTCAATACCATGACAATGAGCTTTAT 1008
Query 1206 CTGAGTTGTTCGGATACCGACTCTAGTTCCGAAGATGAAGATGAAGATGAAGAGCTCTGT 1265
||||||||||||||||||||| ||| |||||||||||||| | ||||||||||||
Sbjct 1009 CTGAGTTGTTCGGATACCGACGCTAATTCCGAAGATGAAG--G----TGAAGAGCTCTG- 1061
Query 1266 GAATTAGATAATGGttcttctt 1287
|||||||||||||||||||||
Sbjct 1062 -AATTAGATAATGGTTCTTCTT 1082
> Ahg900542 jgi|Araly1|900542|Al_scaffold_0004_1192
Length=330
Score = 159 bits (86), Expect = 4e-38
Identities = 94/98 (96%), Gaps = 0/98 (0%)
Strand=Plus/Plus
Query 517 ATGCAGCTAATAGGAAAGACCCGAGGCGACTTACTGTTAAAGGGAAGAAGAAGAAGTTTG 576
||||||||||||||||||||||| ||||||||||||||||||| |||||||| |||||||
Sbjct 1 ATGCAGCTAATAGGAAAGACCCGCGGCGACTTACTGTTAAAGGAAAGAAGAAAAAGTTTG 60
Query 577 TTAATGCAGAGGAAAGAATCAAGTATAAGCTTGAAAAG 614
||||||||||||||||||||||||| ||||||||||||
Sbjct 61 TTAATGCAGAGGAAAGAATCAAGTACAAGCTTGAAAAG 98
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55726028435
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5