BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G28490.1
Length=1780
Score E
Sequences producing significant alignments: (Bits) Value
Ahg481759 jgi|Araly1|481759|fgenesh2_kg.4__819__AT2G28490.1 2134 0.0
> Ahg481759 jgi|Araly1|481759|fgenesh2_kg.4__819__AT2G28490.1
Length=1626
Score = 2134 bits (1155), Expect = 0.0
Identities = 1516/1678 (90%), Gaps = 73/1678 (4%)
Strand=Plus/Plus
Query 1 ATTGTGAATCATCGGAGAGAGT-GGGAAACATGGAGAAAAACAAGAGAGCTATCGGATTT 59
||||||||||||| |||||||| |||||| ||||||||||||||||||||| |||| |||
Sbjct 1 ATTGTGAATCATCAGAGAGAGTGGGGAAAAATGGAGAAAAACAAGAGAGCTTTCGGGTTT 60
Query 60 TTACTTCTGGTCGTACTTATCAATGGAGTTATGATGACGAGATCAAATGGGTATgaagga 119
|| |||||||| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 TTGCTTCTGGTGGTGCTTATCAATGGAGTTATGATGACGAGATCAAATGGGTATGAAGGA 120
Query 120 gaagaagagtggggaggagcaggaggaggagagtggggaggagcagaaggaggaggagca 179
|||||||||| || ||||||| || |||| | |||||| ||||
Sbjct 121 GAAGAAGAGT-----------GG-GGAGGAG-GT-----GGAG--G-AGGAGG-GGAG-- 156
Query 180 tggggaggagg-aggtggaggaggaggagcatggggaggagaaggagaaggaggaggaga 238
||||||||||| | |||||||||||||| | | | || | |||||| |||||||||||
Sbjct 157 TGGGGAGGAGGTA-CTGGAGGAGGAGGAG-A--GTG-GG-G-AGGAGAGGGAGGAGGAGA 209
Query 239 gtggggaggaggaggagaaggaggtggtggaggaagaagaggatggttcatgatgagaga 298
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 210 GTGGGGAGGAGGAGGAGAAGGAGGAGGTGGAGGAAGAAGAGGATGGTTCATGATGAGAGA 269
Query 299 gtcgaggCAAGTGATCAAATCAGAAGGTGGAGAGATGAGAGTTGTGTTATCACCAAGAGG 358
||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 270 GTCGAAGCAAGTGATCAAATCAGAAGGTGGAGAGATGAGAGTTGTGATATCACCAAGAGG 329
Query 359 AAGGATCATTGAGAAGCCAATGCACATTGGGTTTCTAACAATGGAACCTAAGACCCTCTT 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 330 AAGGATCATTGAGAAGCCAATGCACATTGGGTTTCTAACAATGGAACCTAAGACCCTCTT 389
Query 419 TGTCCCTCAGTATCTTGACTCAAGCCTTCTCATCTTTATTCGTCAAGGTGAAGCAACCCT 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 390 TGTCCCTCAGTATCTTGACTCAAGCCTTCTCATCTTTATTCGTCAAGGTGAAGCAACGCT 449
Query 479 TGGAGTGATATGCAAAGACGAATTCGGAGAGAGGAAACTGAAAGCAGGAGACATCTACTG 538
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 450 TGGAGTGATATGCAAAGACGAATTCGGAGAGAGGAAATTGAAAGCAGGAGACATCTACTG 509
Query 539 GATTCCGGCTGGTTCTGTCTTTTATTTACATAA-CACAGGCCTAGGTCAACGCCTTCATG 597
||||||||||||||||||||||||||| ||| |||||||| ||||||||||||||| |
Sbjct 510 GATTCCGGCTGGTTCTGTCTTTTATTTGT-TAAACACAGGCCGAGGTCAACGCCTTCACG 568
Query 598 TCATTTGCAGCATTGATCCAACGCAGAGTCTCGGCTTCGAAACCTTCCAACCTTTCTATA 657
|||||||||||||||||||||| ||||| ||||| |||||||||||||||||||||||||
Sbjct 569 TCATTTGCAGCATTGATCCAACTCAGAGCCTCGGTTTCGAAACCTTCCAACCTTTCTATA 628
Query 658 TAGGTGGAGGGCCTTCGTCTGTTCTAGCTGGATTTGATCCTC-ACACTTTAACTTCAGCA 716
|||||||||| || ||||||||||| ||||| ||||| || | |||||||||||||||||
Sbjct 629 TAGGTGGAGGACCATCGTCTGTTCTCGCTGGCTTTGAACC-CGACACTTTAACTTCAGCA 687
Query 717 TTCAACGTTTCCCTACCTGAGCTGCAACAAATGATGATGAGTCAATTCCGTGGCCCGATT 776
|||||||| |||| ||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct 688 TTCAACGTATCCCGACCAGAGCTTCAACAAATGATGATGAGTCAATTCCGTGGCCCGATT 747
Query 777 GTATACGTCACCGAAGGGCCACAACCACAACCACAATCGACGGTATGGACCCAATTTTTG 836
||| |||||| |||||||||||||||||||| | ||| ||||||||||||| |||
Sbjct 748 GTACACGTCATGGAAGGGCCACAACCACAACCG-A--CGA---TATGGACCCAATTCTTG 801
Query 837 GGGTTGAGAGGGGAAGAGAAACATAAGCAACTCAAGAAACTCTTGGAGACT-AAACAAGG 895
||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||
Sbjct 802 GGGTTGAGAGGGGAAGAGAAACATAAGCAACTCAAGAAACTCTTGGAGA-TGAAACAAGG 860
Query 896 ATCCCCTCAAGATCAACAATACAGTTCAGGGTGGTCTTGGAGGAATATTGTAAGATCGAT 955
|||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct 861 ATCCCCTCAAGATCAACAATCCACTTCAGGGTGGTCTTGGAGGAATATTGTAAGATCGAT 920
Query 956 TTTGGATCTAACAGAAGAAAAGAATAAAGGGTCAGGATCTTCTGAATGTGAGGACTCGTA 1015
|||||||||||||||||||||||||||||||||||||||||| || || |||||||| ||
Sbjct 921 TTTGGATCTAACAGAAGAAAAGAATAAAGGGTCAGGATCTTCCGAGTGCGAGGACTCATA 980
Query 1016 CAACATTTATGATAAGAAAGATAAACCAAGTTTTGATAACAAATATGGATGGAGTATAGC 1075
|||||| |||||| ||||| || | ||| ||| | ||||||
Sbjct 981 CAACATCTATGATCAGAAATAT-------G----GAT---------GGA-G---TATAGC 1016
Query 1076 TCTTGATTATGACGATTACAAGCCTCTTAAACACTCGGGGATCGGAGTATACCTCGTAAA 1135
|||||| |||||||||||| ||||||| |||||||||||||||||||| || ||||||||
Sbjct 1017 TCTTGACTATGACGATTACGAGCCTCTCAAACACTCGGGGATCGGAGTTTATCTCGTAAA 1076
Query 1136 TCTCACCGCGGGAGCAATGATGGCTCCACACATGAACCCAACAGCAACAGAATATGGTAT 1195
||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct 1077 TCTCACCGCGGGATCAATGATGGCTCCACACATGAACCCAACAGCCACAGAATATGGCAT 1136
Query 1196 AGTTTTAGCTGGCTCTGGAGAGATCCAAGTTGTATTTCCTAATGGAACTTCTGCTATGAA 1255
|||||||||||||||||||| || |||||||||||||||||||||||||||||||||||
Sbjct 1137 CGTTTTAGCTGGCTCTGGAGACATTCAAGTTGTATTTCCTAATGGAACTTCTGCTATGAA 1196
Query 1256 CACAAGAGTCTCCGTAGGAGATGTCTTCTGGATCCCTAGATACTTCGCGTTTTGCCAGAT 1315
||| ||||||||||||||||||||||||||||||||| |||||||||| |||||||||||
Sbjct 1197 CACGAGAGTCTCCGTAGGAGATGTCTTCTGGATCCCTCGATACTTCGCTTTTTGCCAGAT 1256
Query 1316 CGCATCTCGGACCGGACCATTCGAGTTTGTAGGATTCACCACATCAGCTCACAAGAATAG 1375
|||||||||||||||||||||||||||||||||||| ||||| || |||||||||||| |
Sbjct 1257 CGCATCTCGGACCGGACCATTCGAGTTTGTAGGATTTACCACGTCGGCTCACAAGAATCG 1316
Query 1376 ACCTCAGTTCCTAGTTGGATCAAACTCACTACTCAGGACTTTGAATCTGACGTCATTGTC 1435
||||||||||| || ||||||||||||||||||| |||| |||||||||||||||||||
Sbjct 1317 GCCTCAGTTCCTGGTCGGATCAAACTCACTACTCAAGACTCTGAATCTGACGTCATTGTC 1376
Query 1436 CATAGCGTTTGGAGTCGATGAAGAGACAATGAGGCGGTTCATTGAGGCGCAGAGAGAGGC 1495
||| || || ||||||||||||||||||||||||||||||||||| || |||||||||||
Sbjct 1377 CATGGCATTCGGAGTCGATGAAGAGACAATGAGGCGGTTCATTGATGCCCAGAGAGAGGC 1436
Query 1496 TGTTATTCTCCCTAC-GCCAGCGGCAGCTCCCCCGCATGTTGGTGAAATGGTTAGCGACC 1554
||||||||||||||| || | |||||||||| |||||||| || |||| ||| |||| |
Sbjct 1437 TGTTATTCTCCCTACCGC-ATCGGCAGCTCCTCCGCATGTCGGCGAAACGGTGCGCGATC 1495
Query 1555 GCTTTGTTTGAGGAATGTGTGAAAGGgtttctttttgtatgttatgtatgtagttaaac- 1613
|| |||||||||||||||| ||||| |||||||||| ||| ||||||||||||||| |
Sbjct 1496 GCCTTGTTTGAGGAATGTGCAAAAGGTTTTCTTTTTGAATGCTATGTATGTAGTTAA-CT 1554
Query 1614 atgagtatgtatggatgtatgtttttgtttCTTTGAAATAACATTAATAAAGGTGATC 1671
|||||||||||||||||||||||||||||||||||||| || ||||||||||||||||
Sbjct 1555 ATGAGTATGTATGGATGTATGTTTTTGTTTCTTTGAAACAATATTAATAAAGGTGATC 1612
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 66810289730
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5