BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G28500.1
Length=765
Score E
Sequences producing significant alignments: (Bits) Value
Ahg481760 jgi|Araly1|481760|fgenesh2_kg.4__820__AT2G28500.1 1131 0.0
Ahg311843 jgi|Araly1|311843|fgenesh1_pm.C_scaffold_1000623 313 1e-84
> Ahg481760 jgi|Araly1|481760|fgenesh2_kg.4__820__AT2G28500.1
Length=764
Score = 1131 bits (612), Expect = 0.0
Identities = 717/767 (93%), Gaps = 9/767 (1%)
Strand=Plus/Plus
Query 1 ATCAAATAAGCCCCCAAAATATTTTGAGAATCATGCTAAAGATGGAGATTAACGGTGGGG 60
|||| ||||| |||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1 ATCAGATAAGTCCCCAAAATATTTTGAGAATCATGCTAAAGATGGAGATTACCGGTGGGG 60
Query 61 TCGCTACACCTACTGC-T---TC--CGCCGTCGCCAAGGTGACAGAAACCACCACTCCCG 114
| |||||||||||||| | || ||||||||||| ||| ||||||||| ||||| |
Sbjct 61 TTGCTACACCTACTGCTTCCGTCGTCGCCGTCGCCACCGTGGCAGAAACCAAAACTCCTG 120
Query 115 TTAACTCTCCTTCTCCCACTTCTTCACCTCCGCCGCCTCCTTCGCCGCAACAGCCGCCAC 174
||| |||||||||||| || ||||||||||| ||||| ||||| ||||| ||||| |||
Sbjct 121 TTACCTCTCCTTCTCCTACCTCTTCACCTCCACCGCCACCTTCCCCGCAGCAGCCAACAC 180
Query 175 AACCACCGGTTGTACTAAGCCCTTGTGCGGCTTGCAAGATTTTGCGGCGGCGGTGCGCCG 234
||| ||||| ||||||||||||||||||||||||||||||||| |||| ||||||||||
Sbjct 181 CACCGCCGGTGGTACTAAGCCCTTGTGCGGCTTGCAAGATTTTGAGGCGCCGGTGCGCCG 240
Query 235 ATAAATGTGTTTTGGCACCGTACTTTCCTCCTACGGACCCGGCGAAGTTCACAATCGCTC 294
| ||||||||||||||||||||||||||||| ||||| |||||||||||||| |||||||
Sbjct 241 AGAAATGTGTTTTGGCACCGTACTTTCCTCCGACGGATCCGGCGAAGTTCACTATCGCTC 300
Query 295 ACCGTGTCTTTGGAGCTAGCAACATTATTAAGTTCTTGCAGGAACTTCCAGAATCGCAAA 354
|||||||||| ||||||||||||||||||||||||||||||||||| || ||||||||||
Sbjct 301 ACCGTGTCTTCGGAGCTAGCAACATTATTAAGTTCTTGCAGGAACTCCCGGAATCGCAAA 360
Query 355 GAACAGATGCTGTTAATAGCATGGTCTATGAAGCCGGAGCTAGGATGAGAGATCCGGTTT 414
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 GAACTGATGCTGTTAATAGCATGGTCTATGAAGCCGGAGCTAGGATGAGAGATCCGGTTT 420
Query 415 ACGGATGTGCGGGTGCAATTTATCATTTGCAGAGACAAGTGAGTGAGCTTCAAGCACAAC 474
|||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||
Sbjct 421 ACGGATGTGCGGGTGCAATTTACCATTTGCAGAGACAAGTGAGCGAGCTTCAAGCACAAC 480
Query 475 TTGCAAAAACTCAAGTAGAGTTAGTAGGCATGCAACTCCAAAGATCAAGTCTACTAGAAT 534
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 TTGCGAAAACTCAAGTAGAGTTAGTAGGCATGCAACTCCAAAGATCAAGTCTACTAGAAT 540
Query 535 TGATATATAATATGGAGCAAACAAAGTTGTCAGTACAAGAGCAAGGACAACAGAAGATGT 594
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 541 TGATATATAATATGGAGCAAACAAAGTTGTCAGCACAAGAGCAAGGACAACAGAAGATGT 600
Query 595 CCTTTGAGAGTTCATTTGAAAGCGGCGATGAGTTCATTAGTAGCCCGGACGAAGAGAGCA 654
|||| |||||||| |||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 601 CCTTCGAGAGTTCGTTTGAAAGCGGCGATGAGTTCATTAGTAGCCCCGACGAAGAGAGCA 660
Query 655 ATGATTTGGGGTTCCTTGAGGACAACAACAACAACAATAATTCATCAATGTCGTGGTGGG 714
|||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 661 ATGATTTGGGATTCCTTGAGGACAACAACAACAA---TAATTCATCAATGTCGTGGTGGG 717
Query 715 ATCCTCTTTGGACATGATCATAACTTATGGTATTATTAGCTCACTTT 761
|||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 718 ATCCTCTTTGGACATGATCATAACTTATGGTATTATTAGCTCGCTTT 764
> Ahg311843 jgi|Araly1|311843|fgenesh1_pm.C_scaffold_1000623
Length=573
Score = 313 bits (169), Expect = 1e-84
Identities = 308/376 (82%), Gaps = 6/376 (2%)
Strand=Plus/Plus
Query 182 GGTTGTACTAAGCCCTTGTGCGGCTTGCAAGATTTTGCGGCGGCGGTGCGCCGATAAATG 241
||| ||||| ||||| || || |||||||| || ||| ||||||| ||||| || | |||
Sbjct 84 GGTGGTACTCAGCCCATGCGCTGCTTGCAAAATCTTGAGGCGGCGTTGCGCAGAGAGATG 143
Query 242 TGTTTTGGCACCGTACTTTCCTCCTACGGACCCGGCGAAGTTCACAATCGCTCACCGTGT 301
||||||||||||||||| ||||| ||||| || || || ||||| ||||| ||||| ||
Sbjct 144 CGTTTTGGCACCGTACTTCCCTCCAACGGATCCAGCCAAATTCACTATCGCCCACCGCGT 203
Query 302 CTTTGGAGCTAGCAACATTATTAAGTTCTTGCAGGAACTTCCAGAATCGCAAAGAACAGA 361
|||||||| |||||||| ||||||||||||||||||||||||||||| |||||||| ||
Sbjct 204 TTTTGGAGCCAGCAACATCATTAAGTTCTTGCAGGAACTTCCAGAATCACAAAGAACTGA 263
Query 362 TGCTGTTAATAGCATGGTCTATGAAGCCGGAGCTAGGATGAGAGATCCGGTTTACGGATG 421
||| || || || ||||| |||||||||| |||| | || |||||||| || || |||||
Sbjct 264 TGCGGTCAACAGTATGGTGTATGAAGCCGAAGCTCGAATTAGAGATCCAGTGTATGGATG 323
Query 422 TGCGGGTGCAATTTATCATTTGCAGA-GACAAGTGAGTGAGCTTCAAGCACAACTTGCAA 480
||| ||| | || || ||| | || | ||||||||||||| || ||||||||||||||||
Sbjct 324 TGCAGGTTCTATATACCATCTACA-ACGACAAGTGAGTGAACTCCAAGCACAACTTGCAA 382
Query 481 AAACTCAAGTAGAGTTAGT-AGGCATGCAACTCCAAAGATCAAGTCTACTAGAATTGA-T 538
|| ||||||| ||| | || | |||||| | |||||||||| | ||||||| || | |
Sbjct 383 AATCTCAAGTGGAGATGGTGAAT-ATGCAATTTCAAAGATCAAATTTACTAGAGTT-ACT 440
Query 539 ATATAATATGGAGCAA 554
||||| ||||| |||
Sbjct 441 TTATAAAATGGACCAA 456
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 28210958580
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5