BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G28510.1
Length=1290
Score E
Sequences producing significant alignments: (Bits) Value
Ahg481761 jgi|Araly1|481761|fgenesh2_kg.4__821__AT2G28510.1 1676 0.0
Ahg484945 jgi|Araly1|484945|fgenesh2_kg.5__937__AT3G45610.1 150 2e-35
Ahg496158 jgi|Araly1|496158|fgenesh2_kg.8__1974__AT5G60200.1 141 1e-32
Ahg935641 jgi|Araly1|935641|scaffold_403629.1 134 2e-30
> Ahg481761 jgi|Araly1|481761|fgenesh2_kg.4__821__AT2G28510.1
Length=1096
Score = 1676 bits (907), Expect = 0.0
Identities = 1049/1115 (94%), Gaps = 20/1115 (2%)
Strand=Plus/Plus
Query 28 tctttctctctctctctctGGTTCCCTAGAATTTGAGCAAAATTTCTACCATAATTGCTA 87
||| ||| |||||||||||||||||||||| |||||||||||| || | | || |
Sbjct 1 TCTCTCTTTCTCTCTCTCTGGTTCCCTAGAGTTTGAGCAAAATATC-A-C--AA---C-C 52
Query 88 ATTATTAAAAGGAAACATAAGTAATCGTTGCTTCGATCCTTTGTTACATGGATGGATCCT 147
|| ||| | |||| ||||||||||||||||||||||||||| ||||||||||||||
Sbjct 53 ATAATT----GCTAACACAAGTAATCGTTGCTTCGATCCTTTGTTGCATGGATGGATCCT 108
Query 148 GAACAGGAAATCTCAAACGAGACTTTGGAAACTATATTGGTAAGTTCAACAAAAGGAAGC 207
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 109 CCACAGGAAATCTCAAACGAGACTTTGGAAACTATATTGGTAAGCTCAACAAAAGGAAGC 168
Query 208 AATAATAACAATAAGAAAATGGAAGAAGAAATGAAGAAGAAAGTATCAAGAGGAGAATTA 267
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 169 AATAATAACAATAAGAAAATGGAAGAAGAAATGAAGAAGAAAGTATCAAGAGGAGAATTA 228
Query 268 GGAGGTGAAGCTCAAAATTGTCCAAGATGTGAATCTCCAAACACAAAGTTTTGTTACTAC 327
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 229 GGAGGTGAAGCTCAAAATTGTCCAAGATGTGAATCTCCAAACACAAAGTTTTGTTACTAC 288
Query 328 AACAACTATAGTCTCTCACAACCTCGTTACTTCTGCAAATCTTGTCGGAGATATTGGACT 387
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 289 AACAACTATAGTCTCTCTCAACCTCGTTACTTCTGCAAATCTTGTCGGAGATATTGGACT 348
Query 388 AAAGGCGGTACTCTTCGTAACGTTCCCGTCGGTGGTGGTTGCCGTCGAAACAAACGATCC 447
||||| |||||||| |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 349 AAAGGTGGTACTCTCCGTAACGTCCCCGTCGGTGGTGGTTGCCGTCGAAACAAACGATCC 408
Query 448 TCTTCCTCAGCTTTCTCCAAGAACAACAACAATAAGTCTATTAATTTCCATACTGATCCA 507
||||||||||||||||||||||||||||| ||||||||||| |||||||| |||||||
Sbjct 409 TCTTCCTCAGCTTTCTCCAAGAACAACAA---TAAGTCTATTAGTTTCCATAATGATCCA 465
Query 508 CTTCAGAACCCTTTAATTACGGGAATGCCACCATCATCTTTTGGTTATGATCACTCCATT 567
||||||||| |||||||||||||||||||||||||||||| ||| ||||| | ||||||
Sbjct 466 CTTCAGAACTCTTTAATTACGGGAATGCCACCATCATCTTATGGATATGA-C--TCCATT 522
Query 568 GATCTCAACCTCGCTTTCGCTACTCTCCAAAAGCATCATTTATCCTCTCAAGCTACTACG 627
||||||||||||||||| |||||||| ||||||||||||| ||||||||| |||||||||
Sbjct 523 GATCTCAACCTCGCTTTTGCTACTCTTCAAAAGCATCATTCATCCTCTCAGGCTACTACG 582
Query 628 CCTTCTTTTGGGTTTGGAGGTGATCTTTCTATTTATGGAAACTCAACGAATGATGTAGGG 687
||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||
Sbjct 583 CCTTCTTTTGGGTTTGGAGGTGATCTTTCTATTTATGGAAACTCAGCCAATGATGTAGGG 642
Query 688 ATCTTCGGAGGGCAAAACGGTACTTAT-AACAATAGTTTGTGTTATGGGTTTATGTCCGG 746
||||| ||||| |||||||||| || | |||||||| |||||||||||||||||||||||
Sbjct 643 ATCTTTGGAGGACAAAACGGTAATT-TCAACAATAGCTTGTGTTATGGGTTTATGTCCGG 701
Query 747 AAATGGTAATAATAATCAAAATGAAATCAAGATGGCTTCTACATTGGGGATGTCTTTGGA 806
||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 702 AAATGGTAACAATCATCAAAATGAAATCAAGATGGCTTCTACATTGGGGATGTCTTTGGA 761
Query 807 AGGAAACGAGAGAAAGCAAGAGAATGTGAACAATAACAATAATAACTCAGAGAATCCTAG 866
||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||
Sbjct 762 AGGAAACGAGAGAAAGCAAGAGAATGTGAACAATAACAACAATAGCTCAGAGAATCCTAG 821
Query 867 CAAGGTGTTCTGGGGGTTTCCATGGCAGATGACCGGAGATTCCGCCGGAGTTGTACCGGA 926
|||||| || ||||| ||||| |||||||||| ||||||||| |||||||||||||||||
Sbjct 822 CAAGGTCTTATGGGGATTTCCGTGGCAGATGAACGGAGATTCTGCCGGAGTTGTACCGGA 881
Query 927 GATTGATCCCGGAAGGGAAAGCTGGAATGGGATGGTTTCATCTTGGAATAATGGTTTACT 986
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 882 GATTGATCCCGGAAGGGAAAGCTGGAATGGGATGGCTTCATCTTGGAATAATGGTTTACT 941
Query 987 CAACACTCCTTTGGTCTAGCAGATCATtaataaataaatatataatatattactatatat 1046
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 942 CAACACTCCTTTGGTCTAGAAGATCATTAATAAATAAATATATAATATATTACTATATAT 1001
Query 1047 TAAAGTTTATGTCATCACATGTTTGTACACCACTTTCACTAATATGGGGGATGTTTGGTT 1106
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1002 TAAAGTTTATGTCATCACATGTTTGTATACCACTTTCACTAATATGGGGGATGTTTGGTT 1061
Query 1107 TTTATAATTTCTAGGGTTTCTATCtttttttAGTT 1141
|||||||||||||||||||||||| ||||||||||
Sbjct 1062 TTTATAATTTCTAGGGTTTCTATCCTTTTTTAGTT 1096
> Ahg484945 jgi|Araly1|484945|fgenesh2_kg.5__937__AT3G45610.1
Length=941
Score = 150 bits (81), Expect = 2e-35
Identities = 129/151 (85%), Gaps = 8/151 (5%)
Strand=Plus/Plus
Query 307 AACACAAAGTTTTGTTACTACAACAACTATAGTCTCTCACAACCTCGTTACTTCTGCAAA 366
||||||||||| || |||||||||||||| |||||||| || ||||| ||||||||||||
Sbjct 208 AACACAAAGTTCTGCTACTACAACAACTACAGTCTCTCTCAGCCTCGCTACTTCTGCAAA 267
Query 367 TCTTGTCGGAGATATTGGACTAAAGGCGGTACTCTTC-GTAACGTTCCCG-TCGGTGGTG 424
||||||||||||||||||||||||||||| | |||| | ||| | ||| |||||||||
Sbjct 268 TCTTGTCGGAGATATTGGACTAAAGGCGGAA-TCTTAAGAAACAT-CCCAATCGGTGGTG 325
Query 425 GTTGCCGTCGAAACA-AA-CGATCCTCTTCC 453
|| ||| |||||| || || |||||||||
Sbjct 326 CTTACCG--GAAACACAAACGCTCCTCTTCC 354
> Ahg496158 jgi|Araly1|496158|fgenesh2_kg.8__1974__AT5G60200.1
Length=1245
Score = 141 bits (76), Expect = 1e-32
Identities = 140/172 (81%), Gaps = 0/172 (0%)
Strand=Plus/Plus
Query 286 TGTCCAAGATGTGAATCTCCAAACACAAAGTTTTGTTACTACAACAACTATAGTCTCTCA 345
|||||| | || || || ||||||||||||||||||||||||||||||| |||||| |
Sbjct 212 TGTCCACGTTGCGACTCAACAAACACAAAGTTTTGTTACTACAACAACTACAGTCTCACT 271
Query 346 CAACCTCGTTACTTCTGCAAATCTTGTCGGAGATATTGGACTAAAGGCGGTACTCTTCGT 405
|| ||||| |||||||||||||| || |||||||||||||| ||||| || || || |
Sbjct 272 CAGCCTCGGTACTTCTGCAAATCATGCCGGAGATATTGGACCAAAGGTGGAACCCTAAGG 331
Query 406 AACGTTCCCGTCGGTGGTGGTTGCCGTCGAAACAAACGATCCTCTTCCTCAG 457
|| | ||||||||||| || ||||| ||||||||| ||| | || ||||
Sbjct 332 AATATCCCCGTCGGTGGAGGCTGCCGGAAAAACAAACGGTCCACATCTTCAG 383
> Ahg935641 jgi|Araly1|935641|scaffold_403629.1
Length=1153
Score = 134 bits (72), Expect = 2e-30
Identities = 115/135 (85%), Gaps = 6/135 (4%)
Strand=Plus/Plus
Query 282 AAATTGTCCAAGATGTGAA-TCT-CCAAACACAAAGTTTTGTTACTACAACAACTATAGT 339
|||||||||||||||| || ||| || |||||||||||||||||||||||||||||||||
Sbjct 260 AAATTGTCCAAGATGT-AACTCTACC-AACACAAAGTTTTGTTACTACAACAACTATAGT 317
Query 340 CTCTCACAACCTCGTTACTTCTGCAAATCTTGTCGGAGATATTGGACTAAAGGCGG-TAC 398
||| ||||||| | |||||||||||| |||||| || |||||||| |||| || | |
Sbjct 318 CTCACACAACCAAGATACTTCTGCAAAGGTTGTCGAAGGTATTGGACCGAAGGTGGAT-C 376
Query 399 TCTTCGTAACGTTCC 413
|||| | || |||||
Sbjct 377 TCTTAGGAATGTTCC 391
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48225490005
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5