BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G28540.2
Length=3376
Score E
Sequences producing significant alignments: (Bits) Value
Ahg320642 jgi|Araly1|320642|fgenesh1_pm.C_scaffold_4000699 4052 0.0
> Ahg320642 jgi|Araly1|320642|fgenesh1_pm.C_scaffold_4000699
Length=2904
Score = 4052 bits (2194), Expect = 0.0
Identities = 2704/2937 (92%), Gaps = 87/2937 (3%)
Strand=Plus/Plus
Query 260 ATGAATGAGAAAGGAGAAAAGACTTGTCCTCTATGTACTGAGGAGATGGACTTGACTGAT 319
|||||||||||||||||||| ||||||||||||||| | |||||||||||||||||||||
Sbjct 1 ATGAATGAGAAAGGAGAAAAAACTTGTCCTCTATGTGCAGAGGAGATGGACTTGACTGAT 60
Query 320 CAACATCTTAAACCTTGCAAATGTGGTTATCAGATATGTGTTTGGTGTTGGCATCATATT 379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 CAACATCTTAAACCTTGCAAATGTGGTTATCAGATATGTGTTTGGTGTTGGCATCATATT 120
Query 380 ATAGAGATGGCTGAGAAAGATAAGACAGAGGGTCGTTGTCCTGCATGTCGTACCCGTTAT 439
||||||||||||||||||||||||||||||||||| || |||||||||||||||| ||||
Sbjct 121 ATAGAGATGGCTGAGAAAGATAAGACAGAGGGTCGCTGCCCTGCATGTCGTACCCCTTAT 180
Query 440 GATAAGGAAAAGATTGTAGGGATGACAGTCAGCTGTGAAAGGTTGGTTGCTGAATTTTAC 499
||||||||||||||||| |||||||||||||||||||||||||||||||||||| || ||
Sbjct 181 GATAAGGAAAAGATTGTTGGGATGACAGTCAGCTGTGAAAGGTTGGTTGCTGAACTTAAC 240
Query 500 ATTGACCGGAAAAAGTCACAGAAGGCGAAGCCTAAACCTGCGGAGGGAAGGAAAGATCTA 559
| ||||||||||||||||||||||||||| |||||||| | ||||||||||||||||||
Sbjct 241 AATGACCGGAAAAAGTCACAGAAGGCGAAAACTAAACCTTCAGAGGGAAGGAAAGATCTA 300
Query 560 ACTGGTGTGAGAGTTATTCAGAGAAACTTGGTTTACGTTATGAGCTTGCCTTTTGACCTG 619
|||||||||||||| || |||||||| |||||||||||||||||||||||||||||||||
Sbjct 301 ACTGGTGTGAGAGTCATCCAGAGAAATTTGGTTTACGTTATGAGCTTGCCTTTTGACCTG 360
Query 620 GCAGATGAAGATATGTTTCAGCGAAGAGAATACTTTGGTCAATATGGGAAAGTCGTCAAA 679
|||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 GCAGATGAAGATCTTTTTCAGCGAAGAGAATACTTTGGTCAATATGGGAAAGTCGTCAAA 420
Query 680 GTAGCAATGTCTCGGACTGCAGCTGGGGCTGTCCAACAATTTCCAAACAATACTTGCAGT 739
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 GTAGCAATGTCTCGGACTGCAGCTGGGGCTGTCCAACAATTTCCAAACAATACTTGCAGT 480
Query 740 GTATATATTACTTACTCCAAAGAGGAGGAAGCGATTCGATGTATCCGATCAGTACATGGA 799
|||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct 481 GTATATATTACTTACTCCAAAGAGGAGGAAGCAATTCGATGTATCCGTTCAGTACATGGA 540
Query 800 TTTATATTGGATGGTAGAAATTTGAAGGCATGTTTTGGAACCATGAAATATTGTCATGCG 859
||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 541 TTTATTTTGGATGGTAGAAATTTGAAGGCATGTTTTGGAACCATGAAGTATTGTCATGCG 600
Query 860 TGGTTGAGAAACATGCCTTGCTCCAATGCTGAATGCCTTTATTTGCATGAGATTGGTGCC 919
||||||||||| ||||||||||||||| |||| |||||||||||||||||||||||| ||
Sbjct 601 TGGTTGAGAAATATGCCTTGCTCCAATTCTGAGTGCCTTTATTTGCATGAGATTGGTTCC 660
Query 920 CAAGAGGATAGTTTCTCAAAAGATGAGACCATATCAGCGCACATGAGGAAAATGGTTCAA 979
||||||||||||||| ||||||||||||||||||||| ||| ||||||| ||||||||||
Sbjct 661 CAAGAGGATAGTTTCACAAAAGATGAGACCATATCAGTGCATATGAGGAGAATGGTTCAA 720
Query 980 GATATTACTGGTTGGAGGGATCATTATGTGCGGCGTTCAGGGAGCATGTTACCTCCACCA 1039
|| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 721 GAAATTACTGGTTGGAGGGATCATTATGTACGGCGTTCAGGGAGCATGTTACCTCCACCA 780
Query 1040 GTTGATGATTATGTTGATAATGAGTCTAGCACAAGAATTATTCCAAAAGTTGTTTTGAAT 1099
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 781 GTTGATGATTATGTTGATAATGAGTCTAGCACAAGAACAATTCCAAAAGTTGTTTTGAAT 840
Query 1100 AATGTACATAGTGCCGCGAAAAATTCTCCTCCAAATGACAGCAACAGTCACTCTGTTACT 1159
|||| |||||||| ||| |||||||||||||||||||||||||||||||| |||||||||
Sbjct 841 AATGCACATAGTGTCGCTAAAAATTCTCCTCCAAATGACAGCAACAGTCAATCTGTTACT 900
Query 1160 CTTCCTGCTGGAGCCATGTGGGGAATGCA----T--------TCTTCGGTACCGAATACA 1207
||||||||||||||||||||||||||||| | ||||||||||| ||||||
Sbjct 901 CTTCCTGCTGGAGCCATGTGGGGAATGCATTCTTCAAGCCAGTCTTCGGTACCAAATACA 960
Query 1208 CCGTCTTCTAGGGAACCCTTAAGAGACAA-ATCTGCTACAGTTTCATCTGCGGTTGCAAT 1266
|| ||||||||||||||||| |||||| | |||||||||| |||||||||||||||||
Sbjct 961 CCAAGTTCTAGGGAACCCTTAAAAGACAAGA-CTGCTACAGTCTCATCTGCGGTTGCAAT 1019
Query 1267 CAATCCTACACAGATCTC-TT-C-TCGTAGTGATGAATTAAGGAAGCCAGCATTAGA-G- 1321
|||||||||||||| || || | ||| ||||||||||||| ||||||| ||||||| |
Sbjct 1020 AAATCCTACACAGATGTCTTTACATCGCAGTGATGAATTAAAGAAGCCAACATTAGAGGA 1079
Query 1322 -----G--CTGCAGGTGGAAATGTTTTGAAACCACAAAGCCTATTGGATGGGAAAACTGA 1374
| |||||| |||||||| ||||||||||| ||||||||||||||| |||||||
Sbjct 1080 TAATCGTACTGCAGATGGAAATGCTTTGAAACCACCAAGCCTATTGGATGGTCAAACTGA 1139
Query 1375 TTTTCCTGAGCTTTCC-TCATCTAATAAGACCCAGATCAGTAATAGTA-GGAACGTAGTC 1432
|||||||||||| ||| | |||||||||||||||||||||||||||| |||| ||||||
Sbjct 1140 TTTTCCTGAGCTCTCCGT-GTCTAATAAGACCCAGATCAGTAATAGTAGGGAA-GTAGTC 1197
Query 1433 TCTGCCAGTGTGGATAATAGTAGAGCTATTAGTGAGCCATCAGATTGCACAGACCTTCCA 1492
|||| |||||||||||||| |||||||||||||||||||||||||||||||||| |||||
Sbjct 1198 TCTGTCAGTGTGGATAATATTAGAGCTATTAGTGAGCCATCAGATTGCACAGACTTTCCA 1257
Query 1493 GAAC--A----T-A--C---T---T-C-T-CTGTCTAATGGAAACAAAATGATTAACAGA 1534
|||| | | | | | | | | |||||||||||||||||||||||||| |||
Sbjct 1258 GAACATACTTCTCAGTCTAGTAGATCCATGCTGTCTAATGGAAACAAAATGATTAATAGA 1317
Query 1535 AGAATACAGAATGGATGCAGCAATGTTGTGTCAGTGGATGCAGATAGTGTTGTGGATGGC 1594
|||||||||| || ||||||| ||| ||||||||||||||||||||||| ||||||||||
Sbjct 1318 AGAATACAGAGTGTATGCAGCGATGATGTGTCAGTGGATGCAGATAGTGCTGTGGATGGC 1377
Query 1595 TATCATGGAATAACAAGATCTGACAAATCACATATTGATCATGCTTCCATAAAGCCAACT 1654
|||||||||||||||||||||||||| |||||| |||||||||||||||||||| || ||
Sbjct 1378 TATCATGGAATAACAAGATCTGACAATTCACATTTTGATCATGCTTCCATAAAGTCATCT 1437
Query 1655 CTTACAGAGGTGTCCCAAGACTATTTACAGCGTTGTGTCGATGAACCTAGAGAAGTTCAG 1714
| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1438 CATACAGAGGTGTCCCAAGATTATTTACAGCGTTGTGTCGATGAACCTAGAGAAGTTCAG 1497
Query 1715 CCATTACAAAAGTCTGGTAGAACTAACGCAAATGAGGTTGGTGTCTCGAGAGAAGAAGTT 1774
|||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1498 CCATTACAAAAGTCCGGTAGAACTAACGCAAATGAGGTCGGTGTCTCGAGAGAAGAAGTT 1557
Query 1775 AATAGAGGTACTTCTTTGATGTCACCATTGGGAACAGGTCATTATCTTGAAGCTGAGGAT 1834
|||| ||||||||||||||||||||||||| |||||| ||||||||||||||| ||||||
Sbjct 1558 AATACAGGTACTTCTTTGATGTCACCATTGAGAACAGATCATTATCTTGAAGCCGAGGAT 1617
Query 1835 GATATATCTTTGTTCTATAGACAAAGACTCAAGGATCCGGAAGTTCTTAGCTGTCAGTCC 1894
|||||||| |||||| |||||||||||||||||||||| |||||||||||||||||| ||
Sbjct 1618 GATATATCGTTGTTCAATAGACAAAGACTCAAGGATCCAGAAGTTCTTAGCTGTCAGCCC 1677
Query 1895 AATGGTTTCCTACGCCCGTCAAATTGTATGCAGCCTTGTTCATCCCAGTATAAGGCTGAG 1954
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1678 AATGGTTTCCTACGCCCGTCAAATAGTATGCAGCCTTGTTCATCCCAGTATAAGGCTGAG 1737
Query 1955 CATGATGAAACCAGGACTGTGTTTGGATCTTCCTATTCTGACAGCAGGGGAAGTAATATA 2014
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1738 CATGATGAAACCAGGACTGTGTTTGGATCTTCCTATTCTGACAGCAGAGGAAGTAATATA 1797
Query 2015 GCACCCATCTCAAATGGATATACCGAGATGCCACTTAGTGAGCCCAATCAGTTAAACGGC 2074
|||||||||||| ||||||||||||||||||||| ||| ||||||||||| |||||||||
Sbjct 1798 GCACCCATCTCACATGGATATACCGAGATGCCACATAGGGAGCCCAATCATTTAAACGGC 1857
Query 2075 AGTCTTAACCATTCTATTTTGGTTCCAGACAAAGCAAGGGACACACAGCCAATTGAAAAT 2134
|||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||
Sbjct 1858 AGTCTTAACCATTCTATTTTGGTTCCAGACAAGGCAAGGGACACACAGCCAATCGAAAAA 1917
Query 2135 TGTTTCGTTGACTCCCATGAAAGCCC-A--AGTGAAATAGATGACAGGATAATTGCAAAT 2191
||||||| |||| || |||| | | | ||||||||||||||||||||||||||||||
Sbjct 1918 AGTTTCGTCGACTTGCAAGAAAACTCTAGGAGTGAAATAGATGACAGGATAATTGCAAAT 1977
Query 2192 ATAATGTCTTTAGATCTTGATGAATACTTAACTTCACCTCATAACTATGCAAATCC-ATT 2250
|||||||||||||||||||||||||||||||||||||||||||||| |||||| || |||
Sbjct 1978 ATAATGTCTTTAGATCTTGATGAATACTTAACTTCACCTCATAACTTTGCAAA-CCTATT 2036
Query 2251 TGGGGAAAGTGACGAAGAGGCCAGGTCTCTTAAGCTAGCCAGTTCCAGTAAAGTTGAGGA 2310
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 2037 TGGGGAAAGTGACGAAGAGGCCAGGTCTCTTCAGCTAGCCAGTTCCAGTAAAGTTGAGGA 2096
Query 2311 TAATCAATCCCGGTTTTCTTTTGCCAGGCAAGAGGAACCAAAGGATCAAGCTTTTGATTC 2370
|||||| ||||||||||||||||| |||||||||||| ||||||||||| ||||||||||
Sbjct 2097 TAATCAGTCCCGGTTTTCTTTTGCAAGGCAAGAGGAATCAAAGGATCAATCTTTTGATTC 2156
Query 2371 TTACAACG-CCTCTAACCAGATGTCACGTGGCAATGACTTCTACCAGAATTCTTCAGAAC 2429
||| |||| || ||||||||| |||||||||||||| ||||||||| |||||| ||||
Sbjct 2157 TTATAACGTCCA-TAACCAGATATCACGTGGCAATGAATTCTACCAGGATTCTTTAGAAG 2215
Query 2430 GACAGAGTCCTAATATGGGTATGTTTGGGACCTATAATGGTCTTTCATCTTGTTATCGCA 2489
||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||
Sbjct 2216 GACAGAGTCCTAATATGGGTATGTTTGGGACGTATAATGGTCTTTCATCTGGTTATCGCA 2275
Query 2490 GGGGACTAGACTACGTCACGGAAAGCTCCACTTTGCCCTCATCCTATAAACCTA-CTTCT 2548
| ||||||||||| ||||||||||||||||||||||| |||||||||||||||| || ||
Sbjct 2276 GAGGACTAGACTATGTCACGGAAAGCTCCACTTTGCCATCATCCTATAAACCTAACT-CT 2334
Query 2549 GTTCCAAGATGTCCGGTTTCAGCACCACCTGGCTTTTCAGTTCCAACTCCAAGTCGACCT 2608
||||||||||||| ||||||||||||||| |||||||||||||||| | | | ||||
Sbjct 2335 GTTCCAAGATGTCTGGTTTCAGCACCACCCGGCTTTTCAGTTCCAAGT--A-G---ACCT 2388
Query 2609 CCTCCTCCAGGCTTCTCCTCAAATGGGAGAGACCATCAGATGATTGATGGCTTTTCAGGA 2668
||||||||||||||||||||||||||||||||||||||||| || ||||| ||||||||
Sbjct 2389 CCTCCTCCAGGCTTCTCCTCAAATGGGAGAGACCATCAGATTTTTCATGGCCTTTCAGGA 2448
Query 2669 AACTCTCGTTTTTCTGATTCAATTGCGTACGGTAATCACTATCAGCAGTCACTTCCGATT 2728
||||||||||||||||||||||| |||||||||||||| ||||||||||||||||| |||
Sbjct 2449 AACTCTCGTTTTTCTGATTCAATAGCGTACGGTAATCATTATCAGCAGTCACTTCCAATT 2508
Query 2729 GAAAATGTGAGGGATGTTCAATACATGGATCCTGCCATTTTGGCCGTTGGTCAAGGCTTT 2788
|| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 2509 GATAATGTGAGGGATGTTCAATTCATGGATCCTGCCATTTTGGCCGTTGGTCAAGGCTTT 2568
Query 2789 GAGAATGCAAGCCTAGATTTCAGATCAAACTTTCAAGGAAACACAAACATGTATGGAAGC 2848
|||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||| |
Sbjct 2569 GAGAATGCAAGCCTAGATTTCAGATCAAACTTCCAAGGAAACACAAACATGTTTGGAAAC 2628
Query 2849 GCGGCAAAGCTCcaacaacaacaacaacaaGCGGTAATGCAGAACCCTTTGTCTATGCAG 2908
||||||||||||||||||||||| ||| ||||||||||||| | | |
Sbjct 2629 GCGGCAAAGCTCCAACAACAACAGCAA---GCGGTAATGCAGA-------G-C----C-- 2671
Query 2909 AACCCTTTGTCTTCGCATCAAAACTGTAGATTCACTGATTCTTTGGGAATGGCACCAAGG 2968
| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 2672 --C--TTTGTCTTCGCATCAAAACTGTAGATTTACTGATTCTTTGGGAATGGCACCAAGG 2727
Query 2969 TTTATAGATCAATCTCAAGGCAATAACTTACTGACTAGAAATATGGCCTTGCCTAATGGT 3028
|||||||||||||||||||||||||| | |||||||||||| || ||||||| ||||||
Sbjct 2728 CTTATAGATCAATCTCAAGGCAATAACATCCTGACTAGAAATCTGCCCTTGCCAAATGGT 2787
Query 3029 C---ACTGGAATGGGTTGATGAGTAACGAGATCCAAACTCGAAACAGACTTCAAAATGAG 3085
| ||||| ||| |||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 2788 CGTCACTGGGATGCGTTGATGAGTAACGAGATCCAAACTCGAAACAGACTCCAAAATGAG 2847
Query 3086 AGACTTGTTGGTTCGACTAATTGGATCCCTGGTTACAATGGGACGTTCAGGATGTAA 3142
||||||||||| ||||| ||||||||||| ||||||||||||||||||||||| |||
Sbjct 2848 AGACTTGTTGGATCGACAAATTGGATCCCCGGTTACAATGGGACGTTCAGGATTTAA 2904
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 127454811977
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5