BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G28570.1
Length=960
Score E
Sequences producing significant alignments: (Bits) Value
Ahg933315 jgi|Araly1|933315|scaffold_401303.1 412 2e-114
> Ahg933315 jgi|Araly1|933315|scaffold_401303.1
Length=276
Score = 412 bits (223), Expect = 2e-114
Identities = 261/279 (94%), Gaps = 3/279 (1%)
Strand=Plus/Plus
Query 274 TTGCAGAGAAACTTGACATTTATGGAGTCTGTGAAGACCAAATCCTCCACCGCGAGGAGC 333
|||||||||||||||||||||||||||||| ||| |||||||||| ||||||||||||||
Sbjct 1 TTGCAGAGAAACTTGACATTTATGGAGTCTCTGACGACCAAATCCACCACCGCGAGGAGC 60
Query 334 GTTGAGCTACCGCCTCGCCGTGGAAAGGTGAAGCGAGAGATCTTTGGTTTCTTAGCCAAT 393
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 GTTGAGCTACCGCCTCGCCGTGGAAAGGTGAAGCGAGAGATCTTTGGTTTCTTAGCCAAT 120
Query 394 TCCATTGTTTCCGCCGCCGTGAAAGCTGGTGGATCGTTTAGGAGGAACGGCGGAGGTGGT 453
||||| ||||||| | ||||||| |||||| ||||| |||||||| ||||||||||
Sbjct 121 TCCATCGTTTCCGT-GA--TGAAAGCCGGTGGAGCGTTTGGGAGGAACTCCGGAGGTGGT 177
Query 454 GGTGGTGGCTCTTCTTCCTCAACCACCACTCCTCCAGGGAGTGGATACACCTCCGACCAG 513
|||||||||||||||||||| ||||||||||||||||||||||| ||||||||||| ||
Sbjct 178 GGTGGTGGCTCTTCTTCCTCCACCACCACTCCTCCAGGGAGTGGCTACACCTCCGAACAA 237
Query 514 AACAACGAATCCACTTAAACAACAAACAGACATAAAGAC 552
|||||||||||||||||||||||||||||||||||||||
Sbjct 238 AACAACGAATCCACTTAAACAACAAACAGACATAAAGAC 276
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35644927395
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5