BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G28580.1
Length=1817
Score E
Sequences producing significant alignments: (Bits) Value
Ahg320646 jgi|Araly1|320646|fgenesh1_pm.C_scaffold_4000703 2351 0.0
Ahg483622 jgi|Araly1|483622|fgenesh2_kg.4__2682__AT2G44930.1 1162 0.0
Ahg887930 jgi|Araly1|887930|Al_scaffold_0169_1 527 1e-148
> Ahg320646 jgi|Araly1|320646|fgenesh1_pm.C_scaffold_4000703
Length=1608
Score = 2351 bits (1273), Expect = 0.0
Identities = 1497/1605 (93%), Gaps = 15/1605 (1%)
Strand=Plus/Plus
Query 39 TCAGAATCTCTAGGA-ATGGTCATGAAGCGAGAGTATATAAAAGACGACGAGCACCAC-A 96
|||||||||| | || || || ||||||||| |||||||||| || || |||| | | |
Sbjct 13 TCAGAATCTC-AAGAGATACTCCTGAAGCGAGGGTATATAAAACACAACAAGCA-CTCTA 70
Query 97 AATCTCTCGGCACCGCCCTGGGTGAGATATTGAAACACAATGAGCCCTCCACATCTCTAA 156
|| ||| ||||| |||||||||||||| | ||||||||||||||||||||||||||||
Sbjct 71 GATTTCTAGGCACGGCCCTGGGTGAGATCCTCAAACACAATGAGCCCTCCACATCTCTAA 130
Query 157 GCACAGTTCTGGGCGAGATGTTTAAAAACAACGAGGAGAAGGAACATATTTTTTCGGATC 216
| |||||||||||||||||||||||||||||||||||||||||||| || ||||||||||
Sbjct 131 GTACAGTTCTGGGCGAGATGTTTAAAAACAACGAGGAGAAGGAACAAATATTTTCGGATC 190
Query 217 TAGAACGAGGAACAATGCTAACAAGACCAATGGGCGAAGGATATATTCAATATCTACGGC 276
|||||||||||||||||||||||||||| ||||| |||| |||||||| | | ||||||
Sbjct 191 TAGAACGAGGAACAATGCTAACAAGACCTATGGGAGAAGAATATATTC-AGA--TACGGC 247
Query 277 TTTCTAAAG--A-GACGACTCAACCGGCGGATTCTAAGATTCCCGGTCTTTGGTCTTCTT 333
||||||||| | ||||||||| | ||||||||||||| |||||||||||||||||||
Sbjct 248 TTTCTAAAGACACAACGACTCAA-C--CGGATTCTAAGATACCCGGTCTTTGGTCTTCTT 304
Query 334 CCGTTAGACCAGAGTTTTGTTGCATCTATAGAGTACCAGACCGGTTACGCAAAGTGAACC 393
| |||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 305 CGGTTAAACCCGAGTTTTGTTGCATCTATAGAGTACCAGACCGGTTACGCAAAGTGAACC 364
Query 394 CCGAGGCTTACACTCCTCAAATGCTGCTAATCGGACCTCTTCACCATTCCAAGAAAGCTG 453
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 365 CCGAGGCTTACACTCCTCAAATGCTGCTAATCGGACCTCTTCACCATTCCAAGAAAGTTG 424
Query 454 AAGCCCTCAAGCGCTACAAAACCGATTTAAGATATTTGAACTATCTGAACATGGAGCTTC 513
||||| |||||||||| |||||||| |||||||||||||||||||| |||||||||||||
Sbjct 425 AAGCCTTCAAGCGCTATAAAACCGAGTTAAGATATTTGAACTATCTCAACATGGAGCTTC 484
Query 514 ACAAGAAGAAGTGCCTTGATAGTATTGCAGATATATATGGGGATCAACCTGTCAAAGAGT 573
||||||||||||||||||||||||||| ||||||||||||||| || |||||||||||||
Sbjct 485 ACAAGAAGAAGTGCCTTGATAGTATTGGAGATATATATGGGGAACAGCCTGTCAAAGAGT 544
Query 574 TCAGGAGAATCATCGAAATAAATGAGAAATTCATAAGAGATAGCTACGCCGAGTCAACAA 633
|||||||| |||| |||| | ||||||||||||||||||||||||||||||||||||| |
Sbjct 545 TCAGGAGACTCATTGAAAGAGATGAGAAATTCATAAGAGATAGCTACGCCGAGTCAACGA 604
Query 634 TATGGATCAATACTAAAGATTTCGTAGAAATGATCCTCCACGACTCGGTGTTCATACTAT 693
| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 605 TTTGGATCAATACTAAAGATTTCGTAGAAATGATCCTCCATGACTCGGTGTTCATACTAA 664
Query 694 TGTTCTTCATTCAAACCGGAAGTACCCTAAACTTCAACAAGAAAGAAGATATTCTTTTCA 753
|||||||||||||||| |||||||| |||||||||| |||||||||||||||||||||||
Sbjct 665 TGTTCTTCATTCAAACAGGAAGTACTCTAAACTTCAGCAAGAAAGAAGATATTCTTTTCA 724
Query 754 ACCAGAGTCGTCTCATAAACGCTACCGCCATTTTAGAAGATCTAATCTTGCTCGAGAACC 813
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 725 ACCAGAGTCGTCTCATAAACTCTACCGCCATTTTAGAAGATCTAATCTTGCTCGAGAACC 784
Query 814 AACTCCCTTATGCCCTTTTAGAGAAACTCTTTGAACCTTTTTCCTCAAATGTCAATACTA 873
|||| ||||||||||||||||||||||||||||||||||||| ||||||| | ||||||
Sbjct 785 AACTTCCTTATGCCCTTTTAGAGAAACTCTTTGAACCTTTTTTCTCAAATCTTGATACTA 844
Query 874 AGGAAACGTTTCGTGATATTACCCTTCGAGCTTTTAGGTTT-GAGGGAAAGATCAAAGAA 932
|||||||||||||||| |||||||||||||||||| || || ||||||||||||||||||
Sbjct 845 AGGAAACGTTTCGTGACATTACCCTTCGAGCTTTT-GGCTTCGAGGGAAAGATCAAAGAA 903
Query 933 GAAGTGAGATTCCAACATTTTACAGATTTGTTTCGGTGTGTCCGTGTCAGCACACTTTCT 992
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 904 GAAGTGAGATTCCAACATTTTACTGATTTGTTTCGGTGTGTCCGTGTCAGCACACTTTCT 963
Query 993 TTGACAGAAGAACAAATTAACATAGCAAAAAACGAGCCACCGAAGAGCAGAAAGATTATG 1052
||| ||||||||||||| | |||||||| || |||||||||||||||||||||||||||
Sbjct 964 TTGGCAGAAGAACAAATCAGTATAGCAAAGAATGAGCCACCGAAGAGCAGAAAGATTATG 1023
Query 1053 TACAACGCAGACAAACTAGACAGTGCAGGAGTGAATTTTGTGAATGTGGATGAAGAAAAT 1112
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1024 TACAACGCAGACAAACTAGACAGTGCAGGAGTGGATTTTGTGAATGTGGATGAAGAAAAT 1083
Query 1113 GATTTATCGTTGGTGATTACTTTCAAAGACGGAATCTTGAAAATGCCTTGTTTCACAGTG 1172
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1084 GATTTATCGTTGGTGATTACTTTCAAAGACGGAATCTTGCAAATGCCTTGTTTCACAGTG 1143
Query 1173 GAAGACAACACCGAGAGGGTCGTGAGGAATTTAATGGCACTCGAGCAATGTCATTACCCT 1232
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1144 GAAGACAACACCGAGAGGGTTATGAGGAATTTAATGGCACTCGAGCAATGTCATTACCCT 1203
Query 1233 CGAACTACTTTTGTTTGTGACTACATCTCCTTCTTGGATTTCCTCATCAATACCGATCAA 1292
| |||| ||| ||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1204 CAAACTGCTTATGTTTGTGACTACATCTCCTTCTTGGATTTCCTCATCAATACCGACCAA 1263
Query 1293 GACGTTGACTTGCTCGCCAAGAAAGGAATTGTAAAGAACTGGTTAGGACATCAAGGATCA 1352
|||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1264 GACGTTGACTTGCTCGTCAAGAAAGGAATTGTAAAGGACTGGTTAGGACATCAAGGATCG 1323
Query 1353 GTGACAGAAATGGTAAACAAGCTATGTTTAGGGCTCGTGGATTTCGGATCTCACTATAGC 1412
|||||||||||||| |||||||| ||||||||||||||||||||||||||||||||| ||
Sbjct 1324 GTGACAGAAATGGTGAACAAGCTGTGTTTAGGGCTCGTGGATTTCGGATCTCACTATTGC 1383
Query 1413 GATATAGTCGAAAACCTCAACAAACACTACGACAATCGTCTCAACAGATCTGTCGGCACT 1472
||||||| ||||| |||||||||||||||||||||||||||||||||||| |||| ||||
Sbjct 1384 GATATAGCCGAAAGCCTCAACAAACACTACGACAATCGTCTCAACAGATCGGTCGCCACT 1443
Query 1473 CTTCGGCGAGTTTATTTCAAAGATCTTTGGACCGGTACTGCCACCATTGCCGCAGTCGTT 1532
|| |||||||||||||||||||||||||||||||||||||||||| | ||||| || |||
Sbjct 1444 CTCCGGCGAGTTTATTTCAAAGATCTTTGGACCGGTACTGCCACCGTCGCCGCCGTTGTT 1503
Query 1533 CTCCTTGTGTTGACTTTAATTCAGACTGTGGCTTCCATTCTCCAAGTGATGATGCAGAAC 1592
||||| ||||||||||| ||||||||||| ||||||||||||||||| || |||||||||
Sbjct 1504 CTCCTCGTGTTGACTTTGATTCAGACTGTAGCTTCCATTCTCCAAGTCATAATGCAGAAC 1563
Query 1593 GACAATAAGTCTCCGCCTCCTCCAGCTCCGTCCCGGGGACTATAG 1637
||||||||||||||||| ||||| ||||||||||||||||| |||
Sbjct 1564 GACAATAAGTCTCCGCCGCCTCCGGCTCCGTCCCGGGGACTGTAG 1608
> Ahg483622 jgi|Araly1|483622|fgenesh2_kg.4__2682__AT2G44930.1
Length=1767
Score = 1162 bits (629), Expect = 0.0
Identities = 1241/1529 (81%), Gaps = 72/1529 (5%)
Strand=Plus/Plus
Query 306 TCTAAGATTCCCGGTCTTTGGTCTTCTTCCGTTAGACCAGAGTTTTGTTGCATCTATAGA 365
||| ||||| ||||| | ||| ||||||| |||| | |||| ||||||||| ||||||
Sbjct 259 TCTGAGATTTCCGGTATATGGCCTTCTTCATTTAG--C-GAGTATTGTTGCATTTATAGA 315
Query 366 GTACC-AGACCGGTTACGCAAAGTGAACCCCGAGGCTTACACTCCTCAAATGCTGCTAAT 424
||||| | |||||||| | | ||||||||| || || ||||||||||||||||| || ||
Sbjct 316 GTACCTA-ACCGGTTAAGGAGAGTGAACCCAGATGCATACACTCCTCAAATGCTTCTCAT 374
Query 425 CGGACCTCTTCACCATTCCAAGAAAGCTGAAGCCCTCAAGCGCTACAAAACCGATTTAAG 484
||| || ||||| ||||| ||||||||| |||| || ||| || ||||||||||| ||
Sbjct 375 CGGTCCACTTCAACATTCTAAGAAAGCTCAAGCTCTTGAGCTCTCCAAAACCGATTCGAG 434
Query 485 ATATTTGAACTATCTGAACATGGAGCTTCACAAGAAGAAGTGCCTTGATAG-TATTGCAG 543
||||||| ||||| |||||||||| ||||||||| |||||| |||| || | |||||||
Sbjct 435 ATATTTGGACTATATGAACATGGAACTTCACAAGGAGAAGTACCTTAAT-GCTATTGCAA 493
Query 544 ATATATATGGGGATCAACCTGTCAAAGAGTTCAGGAGAATCATCGA-AATAAATGAGAAA 602
||| |||||| || ||| | || ||| ||||||| |||||| | || || |||||||
Sbjct 494 ATAAATATGGAGAACAAATTATCGAAGTTTTCAGGAAAATCAT-AAGAACAAGTGAGAAA 552
Query 603 TTCATAAGAGATAGCTACGCCGAGTCAACAATA-TGGATC-AATACTAAAGATTTCGTAG 660
|| |||||||| ||||||||||||||||| | |||||| ||| | |||| ||||| |
Sbjct 553 TTTATAAGAGAAAGCTACGCCGAGTCAAC-GGAGTGGATCAAAT-CCCAAGAGTTCGTGG 610
Query 661 AAATGATCCTCCACGACTCGGTGTTCATACTATTGTTCTTCATTCAAACCGGAAGTACCC 720
|||||||||||| ||||||||||||||||||| |||||| ||||| || | || ||| |
Sbjct 611 AAATGATCCTCCTCGACTCGGTGTTCATACTAGGGTTCTTTATTCAGACTGAAACTACTC 670
Query 721 TAAACTTCAACAAGAAAGAAG-ATATTCTTTT-C---AACCAG--AGTCGTCT-CA-TAA 771
|||| |||| |||||||||| | |||||||| | || || | || | | || |
Sbjct 671 AAAACATCAAGAAGAAAGAAGCA-ATTCTTTTCCATGAAGAAGATATTCTTTTCCAGGAG 729
Query 772 AC--G---C-T-ACCGCCATTTTAGAAGATCTAATCTTGCTCGAGAACCAACTCCCTTAT 824
| | | | ||| | ||||||||||| ||||||||||||||||||||||||||||||
Sbjct 730 CCTTGTCTCATAACCACTATTTTAGAAGACCTAATCTTGCTCGAGAACCAACTCCCTTAT 789
Query 825 GCCCTTTTAGAGAAACTCTTTGA-ACCTTTTTCCTCAAATGTCAATACTAAGGAAACGTT 883
| |||||||||| |||||| | | || ||||| | ||||| | || || |||||||| ||
Sbjct 790 GTCCTTTTAGAGGAACTCTCT-ATACATTTTTTCGCAAATCTTAAAACCAAGGAAAC-TT 847
Query 884 TC-GTGATATTACCCTTCGAGCTTTTAGGTTTGAGGGAAAGATCAAAGAAG-AAGTGAGA 941
|| |||| |||| |||||||||||| ||||| | ||| || ||||||||| || ||| |
Sbjct 848 TCCGTGACATTATCCTTCGAGCTTTCAGGTTAAAAGGAGAGGTCAAAGAAGGAA-TGA-A 905
Query 942 TT-CCAACATTTTACAGATTTGTTTCGGTGTGTCCGTGTCAGCA-CACTTTCTTTGACAG 999
|| || |||||||||||||||||| || |||||| ||| | | |||||| |||||||
Sbjct 906 TTTCCGACATTTTACAGATTTGTTCCGACGTGTCCTTGTG-GAAACACTTTGTTTGACAA 964
Query 1000 AAGAACAAATTAACATAGCAAAAAACGAGCCACCGAAGAGCAGAAAGATTATGTACAACG 1059
|||||||||| || | ||||| | |||||||| |||||| ||||| | || ||||||
Sbjct 965 AAGAACAAATCAAAAGCGCAAAGGATAAGCCACCGGAGAGCATAAAGAGTCTGCACAACG 1024
Query 1060 CAGACAAACTAGACAGTGCAGGAGTGAATTTTGTGAATGTGGATGAAGAAAATGATTTAT 1119
||||||||||||||||||| |||||| |||||||| | |||| ||| |||| ||||||
Sbjct 1025 CAGACAAACTAGACAGTGCTGGAGTGGATTTTGTGCCTCTGGAAGAAAAAAACAATTTAT 1084
Query 1120 CGTTGGTGATTACTTTCAAA-GACGGAATCTTGAAAATGCCTTGTTTCACAGTGGAAGAC 1178
||||||||||||||||| || | ||||||||| |||| ||||||||| || ||| |||
Sbjct 1085 CGTTGGTGATTACTTTCGAACGG-GGAATCTTGGAAATACCTTGTTTCTTAGCGGACGAC 1143
Query 1179 AACACCGAGAGGGTCGTGAGGAATTTAATGGCACTCGAGCAATGTCATTACCCTCGAACT 1238
|||||||||||| | ||||||| |||||||| ||||| |||||||||||||||| |||
Sbjct 1144 AACACCGAGAGGATTATGAGGAACTTAATGGCCCTCGAACAATGTCATTACCCTCTCACT 1203
Query 1239 ACTTTTGTTTGTGACTACATCTCCTTCTTGGATTTCCTCATCAATACCGATCAAGACGTT 1298
||| ||||||| ||||||| ||||||||||||| |||||| | ||||| |||||||||
Sbjct 1204 TCTTATGTTTGTAACTACATAGCCTTCTTGGATTTTCTCATCGACACCGACCAAGACGTT 1263
Query 1299 GACTTGCTCGCCAAGAAAGGAATTGTAAAGAACTGGTTAGGACATCAAGGATCAGTGACA 1358
|||||||||| |||||||||| || |||||||||||||||||||||||| ||| ||| |
Sbjct 1264 GACTTGCTCGTCAAGAAAGGAGTTATAAAGAACTGGTTAGGACATCAAGCATCGGTGGCG 1323
Query 1359 GAAATGGTAAACAAGCTATGTTTAGGGCTCGTGGATTTCGGATCTCACTAT-AGCGATAT 1417
|||||||| |||||||| ||||||||||| |||||||| |||||||||||| | ||||||
Sbjct 1324 GAAATGGTGAACAAGCTGTGTTTAGGGCTTGTGGATTTTGGATCTCACTATTA-CGATAT 1382
Query 1418 AGTCGAAA-ACCTCAACAAACACTACGACAATCGTCTCAACAGATCTGTCGGCACTCTTC 1476
|| ||| | || |||||||||||||||| | |||| ||| ||||| ||| ||| || |
Sbjct 1383 AGCCGATAGAC-TCAACAAACACTACGAGAGCCGTCGCAATAGATCCATCGCCACACTCC 1441
Query 1477 GGCGAGTTTA-TTTCAAAGATCTTTGGACCGGTACTGCCACCATTGCCGCAGTCGTTCTC 1535
|||||||||| ||| ||||| ||||||||||| ||||||||| ||||||| |||||| ||
Sbjct 1442 GGCGAGTTTACTTT-AAAGACCTTTGGACCGGAACTGCCACCGTTGCCGCCGTCGTTATC 1500
Query 1536 CTTGTGTTGACTTTAATTCAGACTGTGGCTTCCATTCTCCAAGTGATGATGCAGAACGAC 1595
|| ||||||||||| ||| ||||||||||||| |||||||||||| | ||||| ||
Sbjct 1501 CTCGTGTTGACTTTGATTGGGACTGTGGCTTCCGTTCTCCAAGTGACG---CAGAAGGAA 1557
Query 1596 AA-TAAGTCTCCGCCTCCTCCAG-CTCCGTCCCGGGGACTATAGATTGTTTCTTGTTATA 1653
|| ||| ||||| || ||||| | ||| || | | |||| ||||||||| ||||||||||
Sbjct 1558 AAATAATTCTCCACCGCCTCC-GTCTCTGTTCTGAGGACCATAGATTGTCTCTTGTTATA 1616
Query 1654 TACGAAACCAAA-CTATATTTG-T-Ctt-ttttttC--C-CACA--CAAAATTATGTTTA 1704
||||||| ||| | ||||||| | ||| |||||| | | || ||||| ||||||||
Sbjct 1617 CACGAAACAAAAACAATATTTGCTTCTTCTTTTTTTTTCTCTCATGCAAAACTATGTTTA 1676
Query 1705 ACT-GTTTTTCTCTTTCAA-TCGACTTTGT--AA-A--TAATGCTTCTTTTTCACGTTGT 1757
| | |||||||||||| | ||||||| || || | ||||| |||||||||| ||||
Sbjct 1677 ATTTGTTTTTCTCTTT-AGCTCGACTTGGTTCAACAAATAATGTTTCTTTTTCATATTGT 1735
Query 1758 TTAGTTATCCCACCATAGCTA-CATCATC 1785
||| |||| ||| ||| |||| | |||||
Sbjct 1736 TTATTTATTCCATCATGGCTAACGTCATC 1764
> Ahg887930 jgi|Araly1|887930|Al_scaffold_0169_1
Length=597
Score = 527 bits (285), Expect = 1e-148
Identities = 340/365 (93%), Gaps = 9/365 (2%)
Strand=Plus/Plus
Query 174 ATGTTTAAAAACAACGAGGAGAAGGAACATATTTTTTCGGATCTAGAACGAGGAACAATG 233
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1 ATGTTTAAAAACAACGAGGAGAAGGAACATATATTTTCGGATCTAGAACGAGGAACAATG 60
Query 234 CTAACAAGACCAATGGGCGAAGGATATATTCAATATCTACGGCTTTCTA-A-AGA-GACG 290
||||||||||| ||||| |||| |||||||| | | |||||||||||| | | | |||
Sbjct 61 CTAACAAGACCTATGGGAGAAGAATATATTC-AGA--TACGGCTTTCTACAGACACAACG 117
Query 291 ACTCAACCGGCGGATTCTAAGATTCCCGGTCTTTGGTCTTCTTCCGTTAGACCAGAGTTT 350
|||||| | ||||||||||||| |||||||||||||||||||| |||| ||| ||||||
Sbjct 118 ACTCAA-C--CGGATTCTAAGATACCCGGTCTTTGGTCTTCTTCGGTTAAACCCGAGTTT 174
Query 351 TGTTGCATCTATAGAGTACCAGACCGGTTACGCAAAGTGAACCCCGAGGCTTACACTCCT 410
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 175 TGTTGCATCTATAGAGTACCAGACCGGTTACGCAAAGTGAACCCCGAGGCTTACACTCCT 234
Query 411 CAAATGCTGCTAATCGGACCTCTTCACCATTCCAAGAAAGCTGAAGCCCTCAAGCGCTAC 470
|||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||
Sbjct 235 CAAATGCTGCTAATCGGACCTCTTCACCATTCCAAGAAAGTTGAAGCCTTCAAGCGCTAT 294
Query 471 AAAACCGATTTAAGATATTTGAACTATCTGAACATGGAGCTTCACAAGAAGAAGTGCCTT 530
|||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 295 AAAACCGAGTTAAGATATTTGAACTATCTCAACATGGAGCTTCACAAGAAGAAGTGCCTT 354
Query 531 GATAG 535
|||||
Sbjct 355 GATAG 359
Score = 364 bits (197), Expect = 1e-99
Identities = 222/234 (95%), Gaps = 2/234 (1%)
Strand=Plus/Plus
Query 712 GAAGTACCCTAAACTTCAACAAGAAAGAAGATATTCTTTTCAACCAGAGTCGTCTCATAA 771
||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 359 GAAGTACTCTAAACTTCAGCAAGAAAGAAGATATTCTTTTCAACCAGAGTCGTCTCATAA 418
Query 772 ACGCTACCGCCATTTTAGAAGATCTAATCTTGCTCGAGAACCAACTCCCTTATGCCCTTT 831
|| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 419 ACTCTACCGCCATTTTAGAAGATCTAATCTTGCTCGAGAACCAACTTCCTTATGCCCTTT 478
Query 832 TAGAGAAACTCTTTGAACCTTTTTCCTCAAATGTCAATACTAAGGAAACGTTTCGTGATA 891
|||||||||||||||||||||||| ||||||| | |||||||||||||||||||||| |
Sbjct 479 TAGAGAAACTCTTTGAACCTTTTTTCTCAAATCTTGATACTAAGGAAACGTTTCGTGACA 538
Query 892 TTACCCTTCGAGCTTTTAGGTTT-GAGGGAAAGATCAAAGAAGAAGTGAGATTC 944
||||||||||||||||| || || ||||||||||||||||||||||||||||||
Sbjct 539 TTACCCTTCGAGCTTTT-GGCTTCGAGGGAAAGATCAAAGAAGAAGTGAGATTC 591
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 68219628795
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5