BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G28590.1
Length=1609
Score E
Sequences producing significant alignments: (Bits) Value
Ahg900623 jgi|Araly1|900623|Al_scaffold_0004_1273 1818 0.0
Ahg937207 jgi|Araly1|937207|scaffold_501398.1 58.4 2e-07
> Ahg900623 jgi|Araly1|900623|Al_scaffold_0004_1273
Length=1287
Score = 1818 bits (984), Expect = 0.0
Identities = 1195/1294 (92%), Gaps = 26/1294 (2%)
Strand=Plus/Plus
Query 157 ATGGGATGTTTCGGACGCACTCCGAAATCGAACAAACGATCAGATACCAAAACCACGAAG 216
||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||
Sbjct 1 ATGGGATGTTTCGGACGCACTACGAAATCGAACAAACGATCAGATATCAAAACCACGAAG 60
Query 217 AACAACGATTTCACCCCaaaaaaaCTCACCGTCAATGC-AA-ATCG------AG-A--T- 264
|||||||||||||||||||||||||||||| ||||| | || |||| || | |
Sbjct 61 AACAACGATTTCACCCCAAAAAAACTCACCATCAATTCAAACATCGTCCATAAGAACGTA 120
Query 265 AAGCTGACACAACCCAGCTCAGATTGTTTAAAAGTTAGTATATGTGGAGATGTAAGCAAG 324
|| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 121 AATCTGACACAACCCAGCTCAGATTGTTTAAAAGTTAGTCTATGTGGAGATGTAAGCAAG 180
Query 325 GAGATAGTTACT-AAGAAGGATCAATTAGCTTTGGATGCTAAAGATACTAATGTTGAAGA 383
||| |||||||| ||| ||||||||||||||||||||||||| |||||||||||||||||
Sbjct 181 GAGGTAGTTACTAAAG-AGGATCAATTAGCTTTGGATGCTAAGGATACTAATGTTGAAGA 239
Query 384 TGAAGTTATAGTGAAGAAAGCACAGACTTTTACATTTGAAGAACTCTCTGTTTCTACTGG 443
||||||||||| ||||||||||||||||||||| |||||||||||| ||||||| || ||
Sbjct 240 TGAAGTTATAGGGAAGAAAGCACAGACTTTTACGTTTGAAGAACTCGCTGTTTCGACCGG 299
Query 444 AAACTTTAAGTCG-GATTGTTTTCTAGGAGAAGGAGGTTTTGGAAAAGTTTACAAAGGTT 502
|||||||||| | |||||||||||||| |||||||| ||||||||||||||||||||||
Sbjct 300 AAACTTTAAG-AGTGATTGTTTTCTAGGTGAAGGAGGATTTGGAAAAGTTTACAAAGGTT 358
Query 503 TCATTGAGAAAATCAATCAGGTTGTTGCAATTAAGCAACTTGATCGGAATGGTGCTCAAG 562
|||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||
Sbjct 359 TCATTGAGAAAATCAATCAGGTTGTTGCGATTAAGCAACTTGATAGGAATGGTGCTCAAG 418
Query 563 GAATCAGGGAGTTTGTTGTTGAAGTGTTGACATTAAGTCTCGCTGATCATCCAAATCTCG 622
|||| ||||| |||||||||||||||||||| |||||||||||||||||||| ||||| |
Sbjct 419 GAATTAGGGAATTTGTTGTTGAAGTGTTGACGTTAAGTCTCGCTGATCATCCGAATCTTG 478
Query 623 TCAAGCTTATAGGATTTTGCGCTGAGGGTGTTCAGAGACTGTTGGTTTACGAGTATATGC 682
| |||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 479 TGAAGCTTATCGGATTTTGTGCTGAGGGTGTTCAGAGACTGTTGGTTTACGAGTATATGC 538
Query 683 CTCTAGGATCTCTGGATAATCACCTTCATGATCTTCCTTC-TGGTA-AAAACCCGCTTGC 740
| ||||| ||| |||| |||||||| ||||||||||| || ||||| |||| |||||||
Sbjct 539 CGCTAGGTTCTTTGGAAAATCACCTCCATGATCTTCC-TCATGGTAGAAAA-CCGCTTGG 596
Query 741 TTGGAACACTCGAATGAAAATAGCGGCTGGTGCAGCAAGAGGACTAGAGTATCTCCACGA 800
||||| ||| || |||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 597 TTGGAGCACACGGATGAAAATAGCGGCTGGTGCAGCAAGAGGACTAGAGTATCTCCATGA 656
Query 801 TACAATGAAACCTCCTGTGATATACCGTGATCTTAAGTGTTCGAATATCTTGATCGATGA 860
||||||||||||||||||||||||||| |||||||| ||||||||||||||| |||||||
Sbjct 657 TACAATGAAACCTCCTGTGATATACCGCGATCTTAAATGTTCGAATATCTTGCTCGATGA 716
Query 861 AGGATATCACGCAAAACTCTCAGACTTTGGATTAGCTAAAGTAGGACCAAGAGGAAGTGA 920
||||||||||||||||||||| |||||||||||||||||||| ||||||||||| |||||
Sbjct 717 AGGATATCACGCAAAACTCTCCGACTTTGGATTAGCTAAAGTCGGACCAAGAGGGAGTGA 776
Query 921 AACTCATGTTTCCACAAGAGTTATGGGAACATACGGTTACTGTGCTCCTGATTACGCATT 980
||| |||||||||||||| |||| ||||||||| ||||||||||||||||||||||| ||
Sbjct 777 AACCCATGTTTCCACAAGGGTTACGGGAACATATGGTTACTGTGCTCCTGATTACGCGTT 836
Query 981 AACTGGACAACTCACATTCAAATCAGATGTATACAGTTTCGGAGTTGTTCTTTTGGAGCT 1040
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 837 AACAGGACAACTCACATTCAAATCAGATGTATACAGTTTCGGAGTTGTTCTTTTGGAGCT 896
Query 1041 TATTACTGGAAGGAAAGCTTACGATAACACGAGAACACGTAATCACCAGAGTCTTGTTGA 1100
||| |||||||| ||||||| ||||||||||||||||||||||||||||||||| |||||
Sbjct 897 TATCACTGGAAGTAAAGCTTTCGATAACACGAGAACACGTAATCACCAGAGTCTAGTTGA 956
Query 1101 ATGGGCAAATCCCTTGTTTAAAGATAGGAAGAATTTCAAGAAAATGGTTGATCCGTTACT 1160
||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 957 ATGGGCACGTCCGTTGTTTAAAGATAGGAAGAATTTCAAGAAAATGGTTGATCCGTTACT 1016
Query 1161 CGAAGGAGATTATCCGGTTAGAGGATTGTATCAAGCACTTGCAATAGCTGCAATGTGTGT 1220
|||||||||||| |||||||||| |||||||||||| |||||||||||||||||||||||
Sbjct 1017 CGAAGGAGATTACCCGGTTAGAGCATTGTATCAAGCGCTTGCAATAGCTGCAATGTGTGT 1076
Query 1221 TCAAGAACAGCCTAGTATGAGACCGGTGATAGCTGATGTAGTAATGGCTTTGGATCACTT 1280
|||||||||||| |||||||||||||||||||| ||||||||||||||| ||||||||||
Sbjct 1077 TCAAGAACAGCCAAGTATGAGACCGGTGATAGCCGATGTAGTAATGGCTCTGGATCACTT 1136
Query 1281 AGCTTCTTCTAAATATGATCGTAGTCACCGTCAAAAGCAGGATAATGTGACCGAGACTAA 1340
||||||||| |||||||||| ||||||||||||||||||| ||||||||| ||||||||
Sbjct 1137 AGCTTCTTCCAAATATGATCATAGTCACCGTCAAAAGCAGCCTAATGTGACAGAGACTAA 1196
Query 1341 AGTCGATGAAGAGAAAACACTTACCACAGAATCTAATGTTTGTGTGGAGGAGAAACAAGA 1400
|||||| ||||||||||||||| | ||||||||||||||||| ||||||||||||||
Sbjct 1197 AGTCGAGGAAGAGAAAACACTTGT-A--GAATCTAATGTTTGTGTCGAGGAGAAACAAGA 1253
Query 1401 -GA--TCAAGATATGCTCAGATCAAGCAACTTAA 1431
|| ||||| | |||||||||||||| ||||||
Sbjct 1254 AGAGATCAAGGTTTGCTCAGATCAAGCGACTTAA 1287
> Ahg937207 jgi|Araly1|937207|scaffold_501398.1
Length=2053
Score = 58.4 bits (31), Expect = 2e-07
Identities = 35/37 (95%), Gaps = 0/37 (0%)
Strand=Plus/Plus
Query 464 TTCTAGGAGAAGGAGGTTTTGGAAAAGTTTACAAAGG 500
|||| ||| ||||||||||||||||||||||||||||
Sbjct 1060 TTCTTGGAAAAGGAGGTTTTGGAAAAGTTTACAAAGG 1096
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60296857835
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5