BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G28600.1
Length=1721
Score E
Sequences producing significant alignments: (Bits) Value
Ahg933318 jgi|Araly1|933318|scaffold_401306.1 2207 0.0
> Ahg933318 jgi|Araly1|933318|scaffold_401306.1
Length=1567
Score = 2207 bits (1195), Expect = 0.0
Identities = 1433/1547 (93%), Gaps = 19/1547 (1%)
Strand=Plus/Plus
Query 58 AAAAATGGCGAAAGGAGACGATAATGTGCAGAGGAAGAAGAATAAAGTGACGAGGAAGAA 117
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 23 AAAAATGGCGAAAGGAGACGATAATGTGCAGAGGAAGAAGAATAAATTGACGAGGAAGAA 82
Query 118 GATGAGTAGGAAGAACGATACCGCCACCGTATCTGCTCGTATCGCCGCCATTATCGCCGC 177
|||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||
Sbjct 83 GATGAGTAGGAAGAACGATACCGCCACCGTCTCTGCTCGTATCTCCGCCATTATCGCCGC 142
Query 178 CAAGAAACGTCGCAAGTCTGGCAAACGCAGCATGTGTCAGGGAATGTGTTTTACTCTTCC 237
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 143 CAAGAAACGTCGCAAGTCTGGTAAACGCAGCATGTGTCAGGGAATGTGTTTTACTCTTCC 202
Query 238 TACACTTGAAGATCCATTCAATGAAAGGCAAGGTAAAGCTGATATTACTaaaaagaagaa 297
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 203 TACACTTGAAGATCCATTCAATGAAAGGCAAGGTAAAGCTGATATTACTAAAAAGAAAAA 262
Query 298 gaaaaagaaaaaggtgaagagtagagaagacaagaaaCCATCTCCTATGTCTATTGAAGG 357
||||||||||||||| |||||||||||||| |||||||||||| ||||||| ||||| ||
Sbjct 263 GAAAAAGAAAAAGGTCAAGAGTAGAGAAGAGAAGAAACCATCTACTATGTCCATTGACGG 322
Query 358 TGTT--G-AGAAGATGGATGGTCCACCAAAGTTTCTGATGTTAAACTTGAATGAGATTGA 414
|||| | |||||||||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct 323 TGTTGAGAAGAAGATGGATGGTCCACCAAAGTTTCTCATGTTGAACTTGAATGAGATTGA 382
Query 415 GAGCTCATTTCGTAAAGATATTACATACAGTGAACAACATGATAAGTCTTTGTTTACTAG 474
|||||| ||||||||||||| |||||| |||||||| ||||||||||||||||| |||||
Sbjct 383 GAGCTCGTTTCGTAAAGATAGTACATATAGTGAACAGCATGATAAGTCTTTGTTCACTAG 442
Query 475 TAGTTGGGGGATTGAGTTCTGGAAATGTTACTCATCTGGGAATGATATTTTGGACACGAG 534
| |||||||||||||||||||||||||| ||||||||||| ||||||||||| || ||
Sbjct 443 CACTTGGGGGATTGAGTTCTGGAAATGTTTTTCATCTGGGAAAGATATTTTGGAGACAAG 502
Query 535 TGGAATGTCTTCCACTGTGGAACAGATTGCTTGGATTGTTTCTACTGCTGCTGATGCTAT 594
|||||||||||| ||||||||||||||||||||||||||||| | ||| |||||||||||
Sbjct 503 TGGAATGTCTTCTACTGTGGAACAGATTGCTTGGATTGTTTCAAGTGCAGCTGATGCTAT 562
Query 595 TGCTAGACGGGAGAAAGAC---GA-G--GTGGAGGAGGAGGAGGA-GTTGTTGGGAAACA 647
||||||||||||||||||| || | | ||||||||||||||| | ||| |||||||
Sbjct 563 TGCTAGACGGGAGAAAGACGAGGAGGAAGAGGAGGAGGAGGAGGAGGAGGTT-GGAAACA 621
Query 648 GTCCTTTTCTTTTGTACCTTGTGCCATCTCAGTCTAAAGCTTCTCAGGTTCGATCGGTTT 707
|||||||||||||||||||||||||||||||||| |||||||||||||| ||||| ||||
Sbjct 622 GTCCTTTTCTTTTGTACCTTGTGCCATCTCAGTCCAAAGCTTCTCAGGTCCGATCCGTTT 681
Query 708 GCAAGGCACTGAAAGGTATTGGAATTCATACTGTGAGCTTACACCAAGGAGCACCACTAG 767
|||||||||||||||||||||||||||| || ||||||||||||||||| || |||||||
Sbjct 682 GCAAGGCACTGAAAGGTATTGGAATTCACACAGTGAGCTTACACCAAGGCGCGCCACTAG 741
Query 768 ATCATCAGATTTCCGGATTAAAAAGCGTTGAGCCTGAATTTATAGTTGCTACACCTGAGA 827
||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||| |
Sbjct 742 ATCATCAGATTTCAGGATTGAAAAGCGTTGAGCCTGAATTTATAGTTGCTACACCTGATA 801
Query 828 GACTTTTGGAGATTGTTACCTTGAAGGGTGTTGATATATCCAA-CGTTTCATTGCTGGTC 886
|||||||||||||||||||||||||||| |||||||||| ||| |||||||||||||||
Sbjct 802 GACTTTTGGAGATTGTTACCTTGAAGGGCGTTGATATAT-CAAGCGTTTCATTGCTGGTA 860
Query 887 ATCGATGAACTAGGTTCACTGTGCAGTGGTGGTTATCTAAATGCTGTTAAATCCATCAAG 946
|| ||||||||||||||||| |||| ||||||||||||| |||||||||||||||| |||
Sbjct 861 ATTGATGAACTAGGTTCACTTTGCACTGGTGGTTATCTAGATGCTGTTAAATCCATTAAG 920
Query 947 CAGGCCATTTCCAGCAAACACCAAACTATAGTTTTTAACAACAGTTTTAGTGCTTCCATT 1006
|||||||||||||||||||||||| | |||||||| ||| |||||||||||| ||||| |
Sbjct 921 CAGGCCATTTCCAGCAAACACCAATCGATAGTTTTCAACGACAGTTTTAGTGATTCCACT 980
Query 1007 ATTCCGGCCGTACAGAGT-TTCTTGGGGGGATCAGTTAACAGAGTTACTGTCAATGAGTC 1065
||||| ||||| |||||| || |||||||||||||||||||||||||| |||| ||| ||
Sbjct 981 ATTCCAGCCGTCCAGAGTCTT-TTGGGGGGATCAGTTAACAGAGTTACCGTCAGTGATTC 1039
Query 1066 TGTTGCCAGCCAAGGCTCTTGTATTACCCAGACTGTTAGTGTATGCGCCTCGGAGGaaaa 1125
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1040 TGTTGCCAGCCAAGGCTCTTGTATTACCCAGACTGTTAGTGTCTGCGCCTCGGAGGAAAA 1099
Query 1126 aaaaCTGCAGAAGTTCGCAAAGCATCTGGATTCATCTTCGTCGAAGTTAATATACATTGT 1185
||| ||||||||||| ||| ||||||||| |||||||||||||||| |||||||||||||
Sbjct 1100 AAAGCTGCAGAAGTTTGCAGAGCATCTGGGTTCATCTTCGTCGAAGATAATATACATTGT 1159
Query 1186 TACGAAGGAGGAAAGTTTCAAAAAGATAATGGCTATCCTTAAGCTCAAGGGTATCTCTGT 1245
||||||||| ||||||||||||||||||| |||| | ||||||||||||||| | |||||
Sbjct 1160 TACGAAGGAAGAAAGTTTCAAAAAGATAAAGGCTCTGCTTAAGCTCAAGGGTCTATCTGT 1219
Query 1246 ATCAACCAGTAGTGATTC-AAAACTCTCAGAGGTCAAAAAGAGCCGGAAACCTGTGGCGC 1304
|||| || |||||| || |||| |||||||||||||||||||||||||||||||||| |
Sbjct 1220 CTCAATCAATAGTGACTCTAAAA-TCTCAGAGGTCAAAAAGAGCCGGAAACCTGTGGCAC 1278
Query 1305 ACTTGATTGATTTTGAACAGTTGGATACTACAGTTATGAGGGAC-TCTGAAACCGTTCTA 1363
|||||||||| | |||||||||||||||||||||||||||||| || ||||||||||||
Sbjct 1279 ACTTGATTGACATAGAACAGTTGGATACTACAGTTATGAGGGACTTC-GAAACCGTTCTA 1337
Query 1364 CTTCCAGACTTTTTCCCATCAATCGAAATTTACACTCAGATTCTGACAAGTATGGCTAGA 1423
|||||||||||||||||||||||||||||||| ||||||||||| || ||||||||||||
Sbjct 1338 CTTCCAGACTTTTTCCCATCAATCGAAATTTATACTCAGATTCTAACGAGTATGGCTAGA 1397
Query 1424 GAGAGTGCTCACGGCGTACTTCACAGCTATATAACAGAAAAGGATGCTGCTTCTTATCAA 1483
||||||| |||||||||||||||||||| ||||||||||||||| ||||||||||||| |
Sbjct 1398 GAGAGTGTTCACGGCGTACTTCACAGCTTTATAACAGAAAAGGAGGCTGCTTCTTATCGA 1457
Query 1484 GCTGGACCATTGGTGAATGTCCTGGAGAATTGTGGTCAGAACGTACCTGACCGTTGGAGG 1543
||||||||||| |||| | ||||||||||||||||||||||||| ||||||| |||||||
Sbjct 1458 GCTGGACCATTAGTGACTATCCTGGAGAATTGTGGTCAGAACGTGCCTGACCCTTGGAGG 1517
Query 1544 AATATGGATGTTGCTATGTCTGATTGATGAAATGTTGTCTCCAATTC 1590
|||||| |||| ||||||||||||| || ||||||||||||||||||
Sbjct 1518 AATATGTATGTCGCTATGTCTGATTAATCAAATGTTGTCTCCAATTC 1564
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64562965275
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5