BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G28605.1
Length=870
Score E
Sequences producing significant alignments: (Bits) Value
Ahg481771 jgi|Araly1|481771|fgenesh2_kg.4__831__AT2G28605.1 1127 0.0
> Ahg481771 jgi|Araly1|481771|fgenesh2_kg.4__831__AT2G28605.1
Length=868
Score = 1127 bits (610), Expect = 0.0
Identities = 756/822 (92%), Gaps = 28/822 (3%)
Strand=Plus/Plus
Query 52 CTCCCAAATTATGTCTCTTCT---CATCTTC-TCTTC--CTCCTT-TCTCTCATCACAAG 104
|||||||||| | |||||||| |||| || ||||| || ||| | | |||||| |||
Sbjct 59 CTCCCAAATTGTCTCTCTTCTCACCATCATCATCTTCTTCTTCTTGT-TTTCATCAGAAG 117
Query 105 ATCCATAAA--T-TCTTCTGCTTTGCCCAAAATCCATCATCC---ACTGTTAGCATCAAT 158
||||||||| | || |||||||| ||||||||||||||||| |||| || ||||||
Sbjct 118 ATCCATAAACGTATCCTCTGCTTTACCCAAAATCCATCATCCAAAACTG--AG-ATCAAT 174
Query 159 CTCAGCAAAAGACATTTGAATCTCTCAATTCTCACACTCTTCTTCAATGGG---TTCTTG 215
|||||||||||||| || ||||||||||||||||||||||||||||||||| |||||
Sbjct 175 CTCAGCAAAAGACACTTAAATCTCTCAATTCTCACACTCTTCTTCAATGGGTTTTTCTTA 234
Query 216 TTGGATAATAAAGCCAAATCCATGGAAGAACTTCAAAGATACACTGATTCCAACAATGGC 275
|||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 235 TTGG---ATAAAGCCAAATCCATCGAAGAACTTCAAAGATACACTGATTCCAACAATGGC 291
Query 276 TTCACTCTTCTCATACCCTCTTCTTATACAAAGGTAGAGAAAGCAGGAGCTAATGCTCTG 335
||||||||||||||||||||||||||||| |||||||||||||| ||||| |||||||||
Sbjct 292 TTCACTCTTCTCATACCCTCTTCTTATACCAAGGTAGAGAAAGCTGGAGCCAATGCTCTG 351
Query 336 TTTGAAGAACTAAACAATGGAAGCAACAATATTGGTGTTGTTGTTAGTCCTGTCCGTATA 395
|||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 352 TTTGAAGAACCAAACAATGGAAGCAACAATATTGGTGTTGTGGTTAGTCCTGTCCGTATA 411
Query 396 AAGAGCCTTGACCAATTTGGTTCTCCTCAATTTGTTGCTGATAAGCTTATCAACGCAGAG 455
|| || ||||||||||||||| ||||||||||||||||||||||||| ||||||||||||
Sbjct 412 AAAAGTCTTGACCAATTTGGTACTCCTCAATTTGTTGCTGATAAGCTCATCAACGCAGAG 471
Query 456 AAACGAAAGGAAAGCACAAAGGAAGCAGAAGTTGTATCAGTGGGAGAGAGAGCAGGATTA 515
|||||||||||||| |||||||||||||||||||| ||||||||||||||| ||||||||
Sbjct 472 AAACGAAAGGAAAGTACAAAGGAAGCAGAAGTTGTGTCAGTGGGAGAGAGACCAGGATTA 531
Query 516 GGACAACAAGTGTATGAGTTTGAATACAAAATTGATAGTACAAGAGGAGGAATCAAGAGG 575
||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||
Sbjct 532 GGACAACAAGTGTATGAGTTTGAATACAAAATTGATAGTACGAGAGGAGGAATTAAGAGG 591
Query 576 GTTTTCTCAGCTGCGTTTGTGAGTTCTAACAAGCTTTATCTATTGAATGTTGTTCATTCA 635
||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 592 GTTTTCTCAGCTGCGTTTGTGAGTTCTAATAAGCTTTATCTATTGAACGTTGTTCATTCA 651
Query 636 GATAAACCAGAGAATCCATTGGATTCAAGTACGAGAATGTCGTTGGAACAAGTTCTTCAC 695
||||||||||||||||| || ||||||||||||||||||| |||||||||||||||||||
Sbjct 652 GATAAACCAGAGAATCCGTTAGATTCAAGTACGAGAATGTTGTTGGAACAAGTTCTTCAC 711
Query 696 TCCTTTGATGCTCTGCCTCTTACATGACCACCAAACCCAATAATCTGTTTCCTTGTTGAG 755
|| ||||||||||||||||||||||||||| | |||||||| |||||| |||||||||
Sbjct 712 TCTTTTGATGCTCTGCCTCTTACATGACCA--A--CCCAATAAACTGTTTTCTTGTTGAG 767
Query 756 CTTGTTTGATGGGCTTATTCTTGAGTTAATGGGCTTTTGTAGTCATTTATTGAGCCCAAT 815
||||||||||||||||||||||||||||||||||||| ||||| | || |||||||||||
Sbjct 768 CTTGTTTGATGGGCTTATTCTTGAGTTAATGGGCTTT-GTAGTAAATTGTTGAGCCCAAT 826
Query 816 AAATCTGAGATTTCTTTTGTTACAAATACTGTTGCCTAGTTA 857
|||||||||||||||||||||||||||| |||||||||||||
Sbjct 827 AAATCTGAGATTTCTTTTGTTACAAATAATGTTGCCTAGTTA 868
Score = 67.6 bits (36), Expect = 1e-10
Identities = 40/42 (95%), Gaps = 0/42 (0%)
Strand=Plus/Plus
Query 9 GGAGAAAGAAGCAAAATGTGGTCGCAAAGCTTCTTAGGTTCT 50
|||||| |||||||||||||||||||||||||||||| ||||
Sbjct 1 GGAGAAGGAAGCAAAATGTGGTCGCAAAGCTTCTTAGCTTCT 42
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32213864865
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5