BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G28610.1
Length=966
Score E
Sequences producing significant alignments: (Bits) Value
Ahg481772 jgi|Araly1|481772|fgenesh2_kg.4__832__AT2G28610.1 1395 0.0
Ahg931663 jgi|Araly1|931663|scaffold_304120.1 78.7 7e-14
> Ahg481772 jgi|Araly1|481772|fgenesh2_kg.4__832__AT2G28610.1
Length=896
Score = 1395 bits (755), Expect = 0.0
Identities = 854/902 (95%), Gaps = 6/902 (1%)
Strand=Plus/Plus
Query 65 ACACACACACAAAGCATCAATATTTGTCTGAACGGAGAATGAGTCCTGTGGCTTCAACGA 124
||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1 ACATACACACAAAGCATCAATATTTGTCTGAGCGGAGAATGAGTCCTGTGGCTTCAACGA 60
Query 125 GGTGGTGTCCGACGCCGGAGCAACTGATGATCTTGGAAGAGATGTACCGGAGTGGTATAC 184
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 61 GGTGGTGTCCGACGCCGGAGCAATTGATGATCTTGGAAGAGATGTACCGGAGTGGTATAC 120
Query 185 GGACTCCGAATGCGGTGCAGATACAACAGATCACAGCTCACTTGGCGTTCTATGGAAGAA 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct 121 GGACTCCGAATGCGGTGCAGATACAACAGATCACAGCTCACTTGGCGTTCTATGGTCGCA 180
Query 245 TCGAGGGCAAAAACGTCTTTTACTGGTTCCAGAACCATAAGGCTAGAGATAGACAGAAGC 304
|||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||
Sbjct 181 TCGAGGGCAAAAACGTCTTTTATTGGTTCCAGAACCATAAGGCCAGAGATAGACAGAAGC 240
Query 305 TGAGGAAGAAACTAGCCAAGCAACTTCACCAGCAACAACATCAACTTCAACTCCAACTTC 364
||||||| ||| ||||||||||||||||||| || ||||||||||||||||||||||| |
Sbjct 241 TGAGGAAAAAATTAGCCAAGCAACTTCACCAACAGCAACATCAACTTCAACTCCAACTAC 300
Query 365 AGCAGATCAAACCAAAACCAATATCATCGATGATTTCTCAACCAGTTAATAAGAATatca 424
| || ||||||||||||||||| ||||||||||| ||||||||||||||||| | |||||
Sbjct 301 AACAAATCAAACCAAAACCAATGTCATCGATGATGTCTCAACCAGTTAATAATACTATCA 360
Query 425 tcgatcatcacaatccttatcatcatcaccatcataatcatcatcataatcatcatcGTC 484
| |||||||| |||||||| ||||||||||||||||||| ||||||||||||||||||||
Sbjct 361 TTGATCATCATAATCCTTACCATCATCACCATCATAATCTTCATCATAATCATCATCGTC 420
Query 485 CATATGATCATATGTCCTTTGATTGCTGCTCTCATCCTTCTCCCATGTGTCTTCCTCATC 544
| ||||||||||||||||| | |||||||||||| |||||| ||||||||||||||||||
Sbjct 421 CTTATGATCATATGTCCTTCGCTTGCTGCTCTCACCCTTCTTCCATGTGTCTTCCTCATC 480
Query 545 AGGGAACTGGAGTAGGAGAAGCTCCAAGCAAAGTGATGAATGAATATTACTGCACCAAAA 604
|||||| ||| | || | || ||| |||||||||||||||||||||||| |||||||| |
Sbjct 481 AGGGAATTGGCGGAG-A-AA-CTCAAAGCAAAGTGATGAATGAATATTATTGCACCAATA 537
Query 605 GTGGAGCTGAAGAGATATTGATGCAAAAATCAATCACGGGTCCAAACTCATCGTACGGTC 664
|||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 538 GTGGGGCTGAAGAGATATTGATGCAAAAATCAATCACGGGTCCAAACTCAACGTACGGTC 597
Query 665 GAGATTGGATGATGATGATGGATATGGGCCCACGACCATCATATCCCTCATCATCATCAT 724
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 598 GAGATTGGATGATGATGATGGATATGGGCCCACGACCATCATATCCCTCATCATCATCA- 656
Query 725 CACCCATTTCATGTTGTAACATGATGATGAGCAGTCCAAAGATACCATTGAAAACCCTGG 784
| || ||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 657 C-CC-ATTCCATGTTGTAACATGATGATGAGCAGTCCAAAGATACCATTGAAAACCCTTG 714
Query 785 AACTTTTCCCAATCTCATCTATCAACTCCAAACAAGACAGTACCAAACTTTAAAGAAAAG 844
||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||
Sbjct 715 AACTTTTCCCAATCTCATCCATCAACTCCAAACAAGACAGTACTAAACTTTAAAGAAAAG 774
Query 845 ACAACAAATACAAAAGAGATTCTGCAGGTGTTTCATTCATGTATCACTGTATGATGTGTC 904
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 775 ACAACAAATACAAAAGAGATTCTGCAGGTGTTTCATTCATGTATCACTGTATGATGTGTC 834
Query 905 AAAGGCTAAGAAGAAAACACGTGTACTTGAGGGTAAAGTAATAGCCGTTGGATATAATTC 964
||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 835 AAAGGCTAAGACGAAAACACGTGTACTTGAGGGTAAAGTAACAGCCGTTGGATATAATTC 894
Query 965 GT 966
||
Sbjct 895 GT 896
> Ahg931663 jgi|Araly1|931663|scaffold_304120.1
Length=932
Score = 78.7 bits (42), Expect = 7e-14
Identities = 47/49 (96%), Gaps = 1/49 (2%)
Strand=Plus/Plus
Query 240 AAGAATCGAGGGCAAAAACGTCTTTTACTGGTTCCAGAACCATAAGGCT 288
||| ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 253 AAG-ATCGAGGGCAAGAACGTCTTTTACTGGTTCCAGAACCATAAGGCT 300
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35873664897
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5