BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT2G28625.1

Length=668
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg481776 jgi|Araly1|481776|fgenesh2_kg.4__836__AT2G28625.1          612    1e-174


> Ahg481776 jgi|Araly1|481776|fgenesh2_kg.4__836__AT2G28625.1
Length=544

 Score =  612 bits (331),  Expect = 1e-174
 Identities = 415/452 (92%), Gaps = 19/452 (4%)
 Strand=Plus/Plus

Query  1    CCGTTAGGTTTAACACCTAAGTTTCAAAATTTTCCCGGGAGACAAGAAAGATTCAAAACA  60
            ||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||
Sbjct  1    CCGTTAGGTTTAACACCTAAGTTTCCAAATTTTCCCGGGAGACAAG-AAGATTCAAAACA  59

Query  61   CAAAGC--agagagaga-a-agagaga--gaaagatcaatggaaaaatgaacgaagagga  114
            ||||||  ||||||||| | |||||||  |||| ||||||||||||||||| ||||||||
Sbjct  60   CAAAGCAGAGAGAGAGAGAGAGAGAGAGTGAAATATCAATGGAAAAATGAAGGAAGAGGA  119

Query  115  gagagTTGGTTCATCGTCGTCTTCTTCATCTTCTCTTCCTGTGAGCTACGGAGTTGACTG  174
            |||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct  120  GAGAGTTGGTTCGTCGTCGTCTTCTTCGTCTTCTCTTCCTGTGAGCTACGGAGTTGACTG  179

Query  175  TGAAAAATATGACTTCTCTTCCTCTGTTTCTTCTCTGTCTCAACCATTTTCTCCTGAAGG  234
             |||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct  180  CGAAAAATACGACTTCTCTTCCTCTGTCTCTTCTCTGTCTCAACCATTTTCTCCTGAAGG  239

Query  235  TTCAAGCAACAAGAGTCACGTTCTTGAAAACAATCTTTCTTTTGTTTTCTCGTTGGACCA  294
            |||||||||||||||||| ||||||||||||||| |||| |||||||| |||||||||||
Sbjct  240  TTCAAGCAACAAGAGTCAAGTTCTTGAAAACAATTTTTCCTTTGTTTTTTCGTTGGACCA  299

Query  295  TAATAGCAACAGC-AGT-CTCATGTTTCCTAGAGATAGACCATGTTCTTGTCTCCACCAT  352
            | | | ||||| | | | ||||||||||||||||||||||||||||||||||||||||||
Sbjct  300  T-A-A-CAACA-CTA-TCCTCATGTTTCCTAGAGATAGACCATGTTCTTGTCTCCACCAT  354

Query  353  GTCTTCGAGTGGATTCTACAGAGATGTTGTGGTTGCCTTTGTTAGCTGTCA-TTCTTCCT  411
            |||||||||||||| ||||| ||||||||||| |||||||||||||| ||  || |||||
Sbjct  355  GTCTTCGAGTGGATACTACAAAGATGTTGTGGCTGCCTTTGTTAGCT-TCCCTTATTCCT  413

Query  412  CTTTCAGACTTAACATACCATTGTATCTTGTG  443
            ||||||||||||| |  |||| ||||||||||
Sbjct  414  CTTTCAGACTTAA-A--CCATCGTATCTTGTG  442



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 24513035631


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5