BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G28630.1
Length=1927
Score E
Sequences producing significant alignments: (Bits) Value
Ahg933324 jgi|Araly1|933324|scaffold_401312.1 2420 0.0
Ahg470802 jgi|Araly1|470802|fgenesh2_kg.1__756__AT1G07720.1 965 0.0
> Ahg933324 jgi|Araly1|933324|scaffold_401312.1
Length=1476
Score = 2420 bits (1310), Expect = 0.0
Identities = 1420/1474 (96%), Gaps = 3/1474 (0%)
Strand=Plus/Plus
Query 76 aagaagaaaaaaa-aaaTAACTATGGAtcttctctttctctttttctctcttctcctctc 134
||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||
Sbjct 4 AAGAAGAAAAAAAGGAATAGTTATGGATCTTCTCTTTCTCTTTTTCTCTCTTCTCCTCTC 63
Query 135 ttacctctttttcAAGATCTGGAAACTCATAGACTCAAAGCAAGACAAAGATTGCTACAT 194
|||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||
Sbjct 64 TTACCTCTTTTTCAAGATCTGGAAACTCATAGACTCAAAGAAAGATAAAGATTGCTACAT 123
Query 195 TTTAGACTACCAATGTCATAAACCAACCGACGATCGAATGGTGAGCACTCAATTCAGTGG 254
|||||||||||||||||||||||| | || |||||||||||||||||||||||||| ||
Sbjct 124 TTTAGACTACCAATGTCATAAACCTTCTGATGATCGAATGGTGAGCACTCAATTCAGCGG 183
Query 255 AGAGATCATTTATCGAAACCAAAACCTTGGTTTAACCGAATACAAGTTCCTTCTCAAAGC 314
|||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 184 AGAGATCATTTACCGAAACCAAAACCTTGGCTTAACCGAATACAAGTTCCTTCTCAAAGC 243
Query 315 CATAGTAAGCTCAGGGATTGGAGAACAAACCTACGCTCCAAGACTTGTCTTTGAAGGTCG 374
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 244 AATAGTAAGCTCAGGGATTGGAGAACAAACCTACGCTCCAAGACTTGTCTTTGAAGGTCG 303
Query 375 AGAAGAGCGTCCTTCGTTACAAGATGGGATCTCCGAGATGGAAGAGTTCTACGTGGACAG 434
|||||||||| ||||||||||||| |||||||| |||||||||||||||||||| |||||
Sbjct 304 AGAAGAGCGTGCTTCGTTACAAGACGGGATCTCGGAGATGGAAGAGTTCTACGTAGACAG 363
Query 435 CATCGGAAAACTCCTGGAGAGAAATCAAATATCTCCTAAAGACATAGACATCCTCGTAGT 494
|||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||
Sbjct 364 CATCGGAAAACTCCTGGAGAGAAATCAAATTTCTCCTCAAGACATAGACATCCTCGTAGT 423
Query 495 CAACGTCTCCATGCTCTCTTCAACGCCATCTTTAGCTTCAAGAATCATTAACCATTACAA 554
|||||||||||||||||||||||| || |||||||||||||||||||| |||||||||||
Sbjct 424 CAACGTCTCCATGCTCTCTTCAACACCTTCTTTAGCTTCAAGAATCATAAACCATTACAA 483
Query 555 GATGAGAGACGACGTCAAAGTCTTCAACTTGACCGGGATGGGATGCAGCGCAAGTCTAAT 614
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 484 GATGAGAGACGACGTCAAAGTCTTCAACTTAACCGGGATGGGATGCAGCGCAAGTCTAAT 543
Query 615 CTCCGTAGACATTGTCAAGAACATTTTTAAGAGCTACGCAAACAAGTTAGCTCTTGTTGC 674
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 544 CTCCGTAGACATTGTCAAGAACATCTTTAAGAGCTACGCAAACAAGTTAGCTCTTGTTGC 603
Query 675 CACCTCCGAGTCTTTGAGCCCTAATTGGTATAGCGGAAACAACCGTTCAATGATCTTAGC 734
|||||||||||||||||||||||||||||||||||||||||||| || |||||||||||
Sbjct 604 TACCTCCGAGTCTTTGAGCCCTAATTGGTATAGCGGAAACAACCGGTCGATGATCTTAGC 663
Query 735 CAACTGTTTGTTCCGGTCCGGTGGATGTGCTATTCTCTTGACTAACAAACGTAGCTTGA- 793
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 664 CAACTGTTTGTTCCGGTCCGGTGGATGTGCTATTCTCTTGACTAACAAACGTAGCTTGAA 723
Query 794 GAAAGAAAGCAATGTTTAAACTCAAGTGTATGGTACGGACTCACCATGGAGCTAGAGAGG 853
||| ||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 724 GAA-GAATGCAATGTTTAAGCTCAAGTGTATGGTACGGACTCACCATGGAGCTAGAGAGG 782
Query 854 AGTCTTATAATTGTTGCATCCAAGCCGAAGATGAACAAGGCCGTGTCGGGTTTTACTTGG 913
|||||||||||||||| |||||||||||||| |||||||||||||||||||||||||| |
Sbjct 783 AGTCTTATAATTGTTGTATCCAAGCCGAAGACGAACAAGGCCGTGTCGGGTTTTACTTAG 842
Query 914 GGAAGAATCTACCAAAAGCCGCTACTCGTGCTTTTGTAGAAAACCTCAAGGTTATAACAC 973
||||||||||||||||||| || ||||||||||||||||| |||||||||||||||||||
Sbjct 843 GGAAGAATCTACCAAAAGCTGCCACTCGTGCTTTTGTAGACAACCTCAAGGTTATAACAC 902
Query 974 CCAAGATTCTTCCCGTAACCGAGCTTATAAGGTTCATGTTAAAGCTTCTTATCAAGAAAA 1033
||||||||||||| ||||||||||| |||||||||||||||||||||| ||||||||||
Sbjct 903 CCAAGATTCTTCCTATAACCGAGCTTTTAAGGTTCATGTTAAAGCTTCTCATCAAGAAAA 962
Query 1034 TCAAGATTCGTCAAAACCCTAGCAAGGGCTCCACGAATCTCCCACCGGGGACTCCATTAA 1093
|||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||
Sbjct 963 TCAAGATTCGTCAAAACCCTAGCAAGGGTTCCACGAATCTCCCACCGGGGACTCCTTTAA 1022
Query 1094 AGGCAGGAATCAACTTCAAGACCGGGATCGAACATTTTTGCATACATACCGGAGGAAAAG 1153
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1023 AGGCAGGAATCAACTTCAAGACCGGGATCGAACATTTTTGCATTCATACCGGAGGAAAAG 1082
Query 1154 CTGTGATTGATGGGATTGGACATAGCTTGGATTTAAACGAGTATGATATTGAACCTGCGA 1213
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1083 CTGTGATTGATGGGATTGGACATAGCTTGGATTTAAACGAGTATGATATTGAACCGGCGA 1142
Query 1214 GGATGACTCTTCACCGGTTTGGCAATACTTCGGCGAGTAGTTTGTGGTATGTGTTGGCTT 1273
|||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||
Sbjct 1143 GGATGACTCTTCACCGGTTTGGGAATACTTCAGCGAGTAGTTTGTGGTATGTGTTGGCTT 1202
Query 1274 ACATGGAGGCCAAGAAGAGATTGAAGAGAGGAGATAGAGTTTTTATGATAAGCTTTGGAG 1333
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1203 ACATGGAGGCCAAGAAGAGATTGAAGAGAGGAGATAGAGTGTTTATGATAAGCTTTGGAG 1262
Query 1334 CTGGTTTTAAGTGTAATAGCTGCGTTTGGGAAGTTGTGAGAGATCTTACTGGTGGTGAAT 1393
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1263 CTGGTTTTAAGTGTAATAGCTGCGTTTGGGAAGTTGTGAGAGATCTTACTGTTGGTGAAT 1322
Query 1394 CAAAAGGAAATGTGTGGAATCATTGCATTGATGATTATCCACCAAAATCGATTCTGAATC 1453
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1323 CAAAAGGAAATGTGTGGAATCATTGCATTGATGATTATCCACCAAAATCGATTTTGAATC 1382
Query 1454 CTTATTTGGAGAAGTTTGGCTGGATTCAAGATGAAGATCCTGACACTTTCAAGGTCCCTG 1513
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1383 CTTATTTGGAGAAGTTTGGTTGGATTCAAGATGAAGATCCTGACACTTTCAAGGTCCCTG 1442
Query 1514 ACGCTTTCATGTaaaacgtttacgcacaaaaacg 1547
||||||||||||||||||||| |||||||||||
Sbjct 1443 ACGCTTTCATGTAAAACGTTTTGGCACAAAAACG 1476
> Ahg470802 jgi|Araly1|470802|fgenesh2_kg.1__756__AT1G07720.1
Length=1683
Score = 965 bits (522), Expect = 0.0
Identities = 1167/1470 (79%), Gaps = 78/1470 (5%)
Strand=Plus/Plus
Query 87 aaaaaTAACT-ATGGAtcttctct-ttct-ctttttctctcttctcctctcttacctctt 143
||||| || | ||||||||||| | || | | | | |||||||||| |||| || ||| |
Sbjct 3 AAAAACAA-TAATGGATCTTCT-TGTTATGC-TCTCCTCTCTTCTCATCTCCTATCTCAT 59
Query 144 tttcAAGATCTGGAAACTCATAGACTCAAAGCA-AGA-CAAAGATTGCTACATTTTAGAC 201
|||||||||||||||| ||||||||| ||| | ||| |||| | |||||||| || |||
Sbjct 60 CTTCAAGATCTGGAAACACATAGACTCCAAG-AGAGATCAAA-ACTGCTACATCTTGGAC 117
Query 202 TACCAATGTCATAAACCAACCGACGATCGAATGGTGAGCACTCAATTCAGTGGAGA-GAT 260
||||||||||| ||||| |||| ||||| |||||||||||||||||||| || || | |
Sbjct 118 TACCAATGTCACAAACCTTCCGATGATCGTATGGTGAGCACTCAATTCAGCGGTGATG-T 176
Query 261 CAT-TTATCGAAACCAAA-ACCTTGGT-TTAACCGAATACAAGTTCCTTCTCAAAGCCAT 317
||| | |||||| |||| ||||| || | || ||| ||||||||||| |||||||||||
Sbjct 177 CATCCT-TCGAAA-CAAACACCTTCGTCTCAA-CGAGTACAAGTTCCTCCTCAAAGCCAT 233
Query 318 AGTAAGCTCAGGGATTGGAGAACAAACCTACGCTCCAAGACT-TGTCTTTGAAGGTCGAG 376
|| || || || || ||||| ||||| ||||| ||||| || | |||| || || || |
Sbjct 234 CGTTAGTTCCGGTATCGGAGAGCAAACTTACGCACCAAGGCTCT-TCTTCGAGGGCCGTG 292
Query 377 AAGAGCGTCCTTCGTTACAAGATGGGATCTCCGAGATGGAAGAGTTCTACGTGGACAGC- 435
|| |||||||| || |||||||||||||||| |||||||||||||| ||| | |||| |
Sbjct 293 AACAGCGTCCTACGCTACAAGATGGGATCTCGGAGATGGAAGAGTTTTACATAGACA-CA 351
Query 436 ATCGGA-AAACTCCTGGAGAGAAATC-AAATATCTCCTAAAGACATAGACATCCTCGTAG 493
|| || ||| |||| |||||||| | |||| || ||| || || ||||||||||| |
Sbjct 352 AT-TGAGAAAGTCCTTGAGAGAAA-CAAAATCTCACCTTCGGAGATTGACATCCTCGTGG 409
Query 494 TCAACGTCTCCATGCTCTCTTCAACGCCATCTTTAGCTTCAAGAATCATTAACCATTACA 553
|||||||||| |||||| ||||||||| || || || ||||||||||||| |||||||
Sbjct 410 TCAACGTCTCAATGCTCAATTCAACGCCTTCACTATCTGCAAGAATCATTAAACATTACA 469
Query 554 AGATGAGAGACGACGTCAAAGTCTTCAACTTGACCGG-GATGGGATGCAGCGCAAGTCTA 612
| |||||||| ||| | |||||||||||||||| ||| ||||||||| ||||| ||| |
Sbjct 470 AAATGAGAGAGGACATAAAAGTCTTCAACTTGA-CGGCGATGGGATGTAGCGCGAGTGTT 528
Query 613 ATCTCCGTAGACATTGTCAAGAACATTTTTAAGAGC-TACGCA-AACAAG-TTAGCTCTT 669
||||| |||| |||||||| ||||| || || | | ||| | |||||| || ||||||
Sbjct 529 ATCTCTATAGATATTGTCAAAAACATCTTCAA-AACATAC-AAGAACAAGCTT-GCTCTT 585
Query 670 GTTGCCACCTCCGAGTC-TTTGAGCCCTAATTGGTATAGCGGAAACAACCGTTCAATGAT 728
|| | ||||||||||| || || ||||| ||||| |||||||||||| | || |||||
Sbjct 586 GTCGTGACCTCCGAGTCACTT-AGTCCTAACTGGTACAGCGGAAACAACAGGTCCATGAT 644
Query 729 -CTTAGCCAACTGTTTGTTCCGGTCCGGTGGATGTGCTATTCTCTTGACTAACAAACGTA 787
||| |||||||| |||||||| |||||||| || ||| |||||||||| ||||| || |
Sbjct 645 CCTT-GCCAACTGCTTGTTCCGCTCCGGTGGCTGCGCTGTTCTCTTGACGAACAAGCGCA 703
Query 788 GCT-TGAGAAAGAAAGCAATGTTTAAACTCAA-GTGTATGGTACGGACTCACCATGGAGC 845
| | |||| | || ||| ||||| || || || |||| ||||| | || |||||||||||
Sbjct 704 G-TCTGAGCAGGAGAGCCATGTTCAAGCT-AAGGTGTTTGGTAAGAACACACCATGGAGC 761
Query 846 TAGAGAGGAGTCTTATA-ATTG-TTGCATCCAAGCCGAAGATGAACAAGGCCGTGTCGGG 903
||||| || | | ||| | | ||| ||||| ||||| || | ||||| | || ||
Sbjct 762 CAGAGACGA-T-TCATACAGCGCTTGTGTCCAAAAAGAAGACGAGCTAGGCCATATC-GG 818
Query 904 T-TTTACTTGGGGAAGAATCTACCAAAAGCCGCTACTCGTGCTTTTGTAGAAAACCTCAA 962
| | |||| | |||| ||| |||||||| || ||||||||||| |||| ||||||||
Sbjct 819 TGTCCACTTAGACAAGACTCTTCCAAAAGCGGCGACTCGTGCTTTCATAGACAACCTCAA 878
Query 963 GGTTATAACACCCAAGATTCTTCCCGTAACCGAGCT-TATAAGGTTCATGTTAAAG-CTT 1020
|| || || |||||||||||||||||||||||||| | ||||||| ||||| | |||
Sbjct 879 AGTCATCACTCCCAAGATTCTTCCCGTAACCGAGCTCT-TAAGGTTTATGTT-GTGTCTT 936
Query 1021 CTTATCAAGAAAATCAAGATTCGTCA-AAACCCTAGCAAGGGCTCCACGAA--T--CTC- 1074
||| ||||| ||| ||||| | ||||||||||| ||||| ||||| | |||
Sbjct 937 CTTCTCAAG------AAGCTTCGT-AGCAACCCTAGCAAAGGCTCAACGAACGTGACTCA 989
Query 1075 --C--CACC--GGGGACTCCATTAAAGGCAGGAATCAACTTCAAGACCGGGATCGAACAT 1128
| | || || | |||||| ||||| || |||||||||||||| || || |||
Sbjct 990 GGCAGCTCCAAAGGCA-GGGATTAAA-GCAGGGATTAACTTCAAGACCGGTATTGACCAT 1047
Query 1129 TTTTGCATACATACCGGAGGAAAAGCTGTGATTGATGGGATTGGACATAGCTTGGATTTA 1188
|| ||||| || || ||||| ||||| || || || | || || | ||| | || |||
Sbjct 1048 TTCTGCATTCACACTGGAGGTAAAGCGGTTATCGACGCAATCGGTTACAGCCTCGACTTA 1107
Query 1189 AACGAGTATGATATTGAACCTGCGAGGATGACTCTTCACCGGTTTGGCAATACTTCGGCG 1248
|||||||| ||| | ||||| ||||||||||| || ||||||||||| || || || |||
Sbjct 1108 AACGAGTACGATCTAGAACCGGCGAGGATGACGCTACACCGGTTTGGGAACACGTCAGCG 1167
Query 1249 AGTAGTTTGTGGTATGTGTTGGCTTACATGGAGGCCAAGAAGAGATTGAAGAGAGGAGAT 1308
||||| ||||||||||| |||| || |||||||| |||||||| ||||||||||||||
Sbjct 1168 AGTAGCTTGTGGTATGTTTTGGGGTATATGGAGGCAAAGAAGAGGCTGAAGAGAGGAGAT 1227
Query 1309 AGAGTTTTTATGATAAGCTTTGGAGCTGGTTTTAAGTGTAATAGCTGCGTTTGGGAAGTT 1368
||||| || ||||| |||||||| || ||||| ||||| ||||| |||||||||||||||
Sbjct 1228 AGAGTGTTCATGATCAGCTTTGGGGCAGGTTTCAAGTGCAATAGTTGCGTTTGGGAAGTT 1287
Query 1369 GTGAGAGATCTTACTGGTGGTGAATCAAAAGGAAATGTGTGGAATCATTGCATTGATGAT 1428
||||||||||||| || ||| ||| | ||| ||||| |||||||||||||||||| |
Sbjct 1288 GTGAGAGATCTTAATGTTGGGGAAGCTCTAGGGAATGTTTGGAATCATTGCATTGATCAG 1347
Query 1429 TATCCACCAAAATCGATTCTGAATCC-TTATTTGGAGAAGTTTGGCTGGATTCA--A-GA 1484
|| ||||||||||||||| ||||||| || |||| |||||| ||| |||||||| | ||
Sbjct 1348 TACCCACCAAAATCGATTTTGAATCCATTTTTTG-AGAAGTATGGTTGGATTCATGAAGA 1406
Query 1485 TGAAGATCCTGACACTTTCAAGGTCCCTGA 1514
||||||||||| ||||||||| | |||||
Sbjct 1407 AGAAGATCCTGATACTTTCAAGATGCCTGA 1436
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 72409555745
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5