BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G28640.1 Length=1818 Score E Sequences producing significant alignments: (Bits) Value Ahg344647 jgi|Araly1|344647|fgenesh1_pg.C_scaffold_4000989 2643 0.0 > Ahg344647 jgi|Araly1|344647|fgenesh1_pg.C_scaffold_4000989 Length=1818 Score = 2643 bits (1431), Expect = 0.0 Identities = 1696/1825 (93%), Gaps = 14/1825 (1%) Strand=Plus/Plus Query 1 ATGATGCTACTATTTAAACCGTCTTTAACTCTAGGAAGAAGGATAAAACCACGTCCATGC 60 ||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||| | Sbjct 1 ATGATGCTACTATTTAAACCGTCTTCAACTCTAGGAAGAAGGTTAAAACCACGTCCATAC 60 Query 61 CAAAGCTTCTCTGAGTCTCTTCTAATGGATAGTATTGAAGCAGCTGAAACTCTCACACGT 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 61 CAAAGCTTCTCTGAGTCTCTTCTAATGGATAGTATTGAAGCAGCTGAAACTCTCACACGT 120 Query 121 AAATGGATTTCT-CCAGATCTCTCTAGTTCATCTTCTTGCTCCCTCTCCTCGATTTTCTC 179 |||||||| ||| ||| |||| |||||||||||||||||||||||||||||||||||||| Sbjct 121 AAATGGATATCTCCCA-ATCTATCTAGTTCATCTTCTTGCTCCCTCTCCTCGATTTTCTC 179 Query 180 CACCGATAATCGCGTAGAAGGACGAAGATTCGTCGAAGTTATCAACAGCTTACAATACGC 239 |||||| |||||||||||||||||| ||||| |||| ||||||||||||||||||||||| Sbjct 180 CACCGAAAATCGCGTAGAAGGACGACGATTCATCGAGGTTATCAACAGCTTACAATACGC 239 Query 240 AATTCAAGGAGTGGTCTTGGTGAATCCTGAATCACCAAAGCTTACTAGAGCGCATAATCT 299 |||||||||||||||||||||||||||||||||||||| || ||| |||| |||||||| Sbjct 240 GATTCAAGGAGTGGTCTTGGTGAATCCTGAATCACCAAAACTCACTCGAGCCCATAATCT 299 Query 300 TGTGACAATCGCTATGAAACAGTTGGAAAAAGAGTTTTACCGGATTTTAAAATCGAATCG 359 ||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 300 TGTAACAATCGCTATGAAACAGTTGGAAAAGGAGTTTTACCGGATTTTAAAATCGAATCG 359 Query 360 ACGGAATCTTGATCCGGAATCCGTATCCGTTCGATCTTCCCCATCTTTCAATGCAAGAAA 419 ||||||||||||| | ||| ||||||||||||||||||||||||||||||||| || Sbjct 360 ACGGAATCTTGAT-C-----CCGAATCCGTTCGATCTTCCCCATCTTTCAATGCAAGGAA 413 Query 420 CAAAGTGTCTATTTATTCCCAAGTTCCAAAATCTGAAGAAGCTGATGTTATGACGGATTT 479 |||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 414 TAAAGTGTCGATTTATTCCCAAGTTCCTAAATCTGAAGAAGCTGATGTTATGACGGATTT 473 Query 480 GAAAATGATCGCTGATTGTATGATATCTTCGGGTTACGAAAACGAATGTATCAAGATTTA 539 |||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 474 GAAAATGATCTCTGATTGTATGATATCATCGGGTTACGAAAACGAATGTATCAAGATTTA 533 Query 540 CAAGAAGATTAGAGGATCAATCATGGTTAAAGCGTTGAGTAACTTAGGGTTTGAGAATCT 599 ||||||||| ||||||||||| |||||| |||| |||||||||||||||||||||||||| Sbjct 534 CAAGAAGATAAGAGGATCAATTATGGTTGAAGCATTGAGTAACTTAGGGTTTGAGAATCT 593 Query 600 AAGTTTTGGCAAGATTCAAAAATTGGATTGGGATAGTATGGAGAAGAACATCAAGAAATG 659 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 594 AAGTTTTGGAAAGATTCAAAAATTGGATTGGGATAGTATGGAGAAGAACATCAAGAAATG 653 Query 660 GTTAGAAGCTACGAAAGTCCTAATCACAAACTTGTTCGAGGGAGAAAGAATCCTTAGCGA 719 ||||||||||||||||||||| ||| | || |||||||||||||||||||||||| |||| Sbjct 654 GTTAGAAGCTACGAAAGTCCTTATCGCGAATTTGTTCGAGGGAGAAAGAATCCTTTGCGA 713 Query 720 TCACGTTTTCTCGCCTTCAGTCTCTGTCGCGGAGTCTTGTTTCACGGAGATCACGTTAGA 779 ||||||||||||||| || || || || || |||||||| ||||||||||| |||||||| Sbjct 714 TCACGTTTTCTCGCCGTCTGTTTCCGTAGCCGAGTCTTGCTTCACGGAGATTACGTTAGA 773 Query 780 TAGTGCTTTAACACTCTTTATCTTCCCCGTGAGTGTAGCTCGATGTAAGAAAACCGTCGA 839 |||||||||||| |||||||||||||| |||||||| || ||||||| ||||||||||| Sbjct 774 TAGTGCTTTAACTCTCTTTATCTTCCCAGTGAGTGTTGCAAGATGTAAAAAAACCGTCGA 833 Query 840 GAAAATCTTCCTTACTCTCGACATTTACCAAACGATATCGCAGCTTATGCCTCAAATCGA 899 ||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||| || Sbjct 834 GAAAATCTTCCTTACTCTCGATATTTACCAAACGATATCGCAGCTTATGCCCCAAATTGA 893 Query 900 AGAGATTTTTAGTTATGATTCGACTACTGCGGTTCGACTACAAGCTGCTGATTCTCTCAA 959 ||||||||| ||||||||||||||| |||| |||||| ||||||| ||||||||||| || Sbjct 894 AGAGATTTTCAGTTATGATTCGACTTCTGCAGTTCGATTACAAGCCGCTGATTCTCTTAA 953 Query 960 CAATCTCGGTGAAGAGATTAATTCAATGGTGGCTGAATTCGAAGCTTCGATTACGAAAGA 1019 ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 954 GAATCTTGGTGAAGAGATTAATTCAATGGTGGCTGAATTCGAAGCTTCGATTACGAAAGA 1013 Query 1020 ATCTTCGAAAACCCCAATCCGTGGAGGCAGTGTTCATCAGCTCACAAGGTACGTAATGAA 1079 |||||||||| | ||||||| ||||||| | ||||||||||||||||||||||||||||| Sbjct 1014 ATCTTCGAAATCTCCAATCCCTGGAGGCGGAGTTCATCAGCTCACAAGGTACGTAATGAA 1073 Query 1080 TTTCATCGTTTTTCTCGCGGATTACCACGAATGTCTCGCTGGAGTTCTCACCGAATCGAC 1139 |||||||||||| |||||||||||||| |||||||| ||||||||||| || |||||||| Sbjct 1074 TTTCATCGTTTTCCTCGCGGATTACCATGAATGTCTAGCTGGAGTTCTAACTGAATCGAC 1133 Query 1140 GTTGCCATTACCGGAAGATTACTTTGGGAACAATGACGAAGACAACAACGAAGGAGAAAC 1199 |||||||||||||||||||||||||||||||||||||||||| ||||| || |||||||| Sbjct 1134 GTTGCCATTACCGGAAGATTACTTTGGGAACAATGACGAAGATAACAAGGACGGAGAAAC 1193 Query 1200 CGGATCTTC-T-T-CTACT--G-TAACCACAAGAATTGCATGGCTAATCCTCGTCTTGCT 1253 | ||||||| | | || || | ||||||||||||||||||||||||||||||| ||||| Sbjct 1194 CAGATCTTCATCTTCTTCTACGGTAACCACAAGAATTGCATGGCTAATCCTCGTATTGCT 1253 Query 1254 CTGTAAAATCGACACGAAATCTCGAATGTACAACGACATGGCTCTTTCATACCTCTTCCT 1313 |||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 1254 CTGTAAAATCGATACGAAATCTCGAATGTACAACGACATGGCTCTTTCATATCTCTTCCT 1313 Query 1314 AGCCAACAATCTGCATTACGTGATCTCCAAGGTACGTACATCGAATATGAGAGTCGTGCT 1373 |||||||||||||||||||||||||||||||||||||||||||||| |||| || ||||| Sbjct 1314 AGCCAACAATCTGCATTACGTGATCTCCAAGGTACGTACATCGAATCTGAGGGTTGTGCT 1373 Query 1374 TGGCGACGAATGGGTAACGAATCACGAAGGGAAAGTTACTCAGTACCTCGAAAAATACGA 1433 |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 1374 TGGCGACGAATGGGTAACGAATCACGAAGGGAAAGTTACTCAATACCTCGAAAAATACGA 1433 Query 1434 GAAAATTGCTTGGGGAGAAGTGATAACGTCACTTTTCGATTCCAACGAAGAAATGCTCGA 1493 |||||| ||||||||||||||||| | ||| |||| |||||| ||||||||||||||| | Sbjct 1434 GAAAATCGCTTGGGGAGAAGTGATTATGTCGCTTTCCGATTCAAACGAAGAAATGCTCAA 1493 Query 1494 AGAACACGTGGCGAAAGAGCGGTTGATGCGGTTCAACGAAGGGTTTGAGGAAGCGTTTCA 1553 |||| ||||||||||||||||||| | |||||||||||| | ||| |||||||||||||| Sbjct 1494 AGAAAACGTGGCGAAAGAGCGGTTAAAGCGGTTCAACGACGCGTTCGAGGAAGCGTTTCA 1553 Query 1554 GAAACAGAGTGAGTGGGTCGTACCGGATTCGAAACTTAGAGACGATTTAAAAGATTCCGT 1613 ||||||||| || ||||| | ||||||||||||||| ||| ||||||||||||||||||| Sbjct 1554 GAAACAGAGCGAATGGGTAGCACCGGATTCGAAACTAAGAAACGATTTAAAAGATTCCGT 1613 Query 1614 GACGGAGAAGTTAACAACTGTTACGACGACGTTTTATGAAAAGTACCACGTTGAAAATTG 1673 |||| |||||||||| |||| ||||| ||||||||| |||||||||||| |||||||| Sbjct 1614 GACGAAGAAGTTAACGTCTGTCGCGACGTCGTTTTATGCAAAGTACCACGTCGAAAATTG 1673 Query 1674 GGAGGAAGTCAAATTTGCCCCTGAAGATTTGGATAATTACCTCTCTGACCTTTTCTTAGG 1733 ||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 1674 GGAGGAAGTCAGATTTGCCCCTGAAGATTTGGGTAATTACCTCTCTGACCTTTTCTTAGG 1733 Query 1734 TACGGGACGATCTTGTATTATCGTTCCTTCGCTTAAACAATCGGACTCGGGACGTTCACT 1793 ||||||||| || |||||||| |||||||||||||||| ||||||||||||||||||||| Sbjct 1734 TACGGGACGGTCGTGTATTATTGTTCCTTCGCTTAAACCATCGGACTCGGGACGTTCACT 1793 Query 1794 TAAAGATTCAGAATCAGGACGTTGA 1818 ||| |||||||||||||||||||| Sbjct 1794 CAAAAATTCAGAATCAGGACGTTGA 1818 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 68257719040 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5