BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G28640.1
Length=1818
Score E
Sequences producing significant alignments: (Bits) Value
Ahg344647 jgi|Araly1|344647|fgenesh1_pg.C_scaffold_4000989 2643 0.0
> Ahg344647 jgi|Araly1|344647|fgenesh1_pg.C_scaffold_4000989
Length=1818
Score = 2643 bits (1431), Expect = 0.0
Identities = 1696/1825 (93%), Gaps = 14/1825 (1%)
Strand=Plus/Plus
Query 1 ATGATGCTACTATTTAAACCGTCTTTAACTCTAGGAAGAAGGATAAAACCACGTCCATGC 60
||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||| |
Sbjct 1 ATGATGCTACTATTTAAACCGTCTTCAACTCTAGGAAGAAGGTTAAAACCACGTCCATAC 60
Query 61 CAAAGCTTCTCTGAGTCTCTTCTAATGGATAGTATTGAAGCAGCTGAAACTCTCACACGT 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 CAAAGCTTCTCTGAGTCTCTTCTAATGGATAGTATTGAAGCAGCTGAAACTCTCACACGT 120
Query 121 AAATGGATTTCT-CCAGATCTCTCTAGTTCATCTTCTTGCTCCCTCTCCTCGATTTTCTC 179
|||||||| ||| ||| |||| ||||||||||||||||||||||||||||||||||||||
Sbjct 121 AAATGGATATCTCCCA-ATCTATCTAGTTCATCTTCTTGCTCCCTCTCCTCGATTTTCTC 179
Query 180 CACCGATAATCGCGTAGAAGGACGAAGATTCGTCGAAGTTATCAACAGCTTACAATACGC 239
|||||| |||||||||||||||||| ||||| |||| |||||||||||||||||||||||
Sbjct 180 CACCGAAAATCGCGTAGAAGGACGACGATTCATCGAGGTTATCAACAGCTTACAATACGC 239
Query 240 AATTCAAGGAGTGGTCTTGGTGAATCCTGAATCACCAAAGCTTACTAGAGCGCATAATCT 299
|||||||||||||||||||||||||||||||||||||| || ||| |||| ||||||||
Sbjct 240 GATTCAAGGAGTGGTCTTGGTGAATCCTGAATCACCAAAACTCACTCGAGCCCATAATCT 299
Query 300 TGTGACAATCGCTATGAAACAGTTGGAAAAAGAGTTTTACCGGATTTTAAAATCGAATCG 359
||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 300 TGTAACAATCGCTATGAAACAGTTGGAAAAGGAGTTTTACCGGATTTTAAAATCGAATCG 359
Query 360 ACGGAATCTTGATCCGGAATCCGTATCCGTTCGATCTTCCCCATCTTTCAATGCAAGAAA 419
||||||||||||| | ||| ||||||||||||||||||||||||||||||||| ||
Sbjct 360 ACGGAATCTTGAT-C-----CCGAATCCGTTCGATCTTCCCCATCTTTCAATGCAAGGAA 413
Query 420 CAAAGTGTCTATTTATTCCCAAGTTCCAAAATCTGAAGAAGCTGATGTTATGACGGATTT 479
|||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 414 TAAAGTGTCGATTTATTCCCAAGTTCCTAAATCTGAAGAAGCTGATGTTATGACGGATTT 473
Query 480 GAAAATGATCGCTGATTGTATGATATCTTCGGGTTACGAAAACGAATGTATCAAGATTTA 539
|||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 474 GAAAATGATCTCTGATTGTATGATATCATCGGGTTACGAAAACGAATGTATCAAGATTTA 533
Query 540 CAAGAAGATTAGAGGATCAATCATGGTTAAAGCGTTGAGTAACTTAGGGTTTGAGAATCT 599
||||||||| ||||||||||| |||||| |||| ||||||||||||||||||||||||||
Sbjct 534 CAAGAAGATAAGAGGATCAATTATGGTTGAAGCATTGAGTAACTTAGGGTTTGAGAATCT 593
Query 600 AAGTTTTGGCAAGATTCAAAAATTGGATTGGGATAGTATGGAGAAGAACATCAAGAAATG 659
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 594 AAGTTTTGGAAAGATTCAAAAATTGGATTGGGATAGTATGGAGAAGAACATCAAGAAATG 653
Query 660 GTTAGAAGCTACGAAAGTCCTAATCACAAACTTGTTCGAGGGAGAAAGAATCCTTAGCGA 719
||||||||||||||||||||| ||| | || |||||||||||||||||||||||| ||||
Sbjct 654 GTTAGAAGCTACGAAAGTCCTTATCGCGAATTTGTTCGAGGGAGAAAGAATCCTTTGCGA 713
Query 720 TCACGTTTTCTCGCCTTCAGTCTCTGTCGCGGAGTCTTGTTTCACGGAGATCACGTTAGA 779
||||||||||||||| || || || || || |||||||| ||||||||||| ||||||||
Sbjct 714 TCACGTTTTCTCGCCGTCTGTTTCCGTAGCCGAGTCTTGCTTCACGGAGATTACGTTAGA 773
Query 780 TAGTGCTTTAACACTCTTTATCTTCCCCGTGAGTGTAGCTCGATGTAAGAAAACCGTCGA 839
|||||||||||| |||||||||||||| |||||||| || ||||||| |||||||||||
Sbjct 774 TAGTGCTTTAACTCTCTTTATCTTCCCAGTGAGTGTTGCAAGATGTAAAAAAACCGTCGA 833
Query 840 GAAAATCTTCCTTACTCTCGACATTTACCAAACGATATCGCAGCTTATGCCTCAAATCGA 899
||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||| ||
Sbjct 834 GAAAATCTTCCTTACTCTCGATATTTACCAAACGATATCGCAGCTTATGCCCCAAATTGA 893
Query 900 AGAGATTTTTAGTTATGATTCGACTACTGCGGTTCGACTACAAGCTGCTGATTCTCTCAA 959
||||||||| ||||||||||||||| |||| |||||| ||||||| ||||||||||| ||
Sbjct 894 AGAGATTTTCAGTTATGATTCGACTTCTGCAGTTCGATTACAAGCCGCTGATTCTCTTAA 953
Query 960 CAATCTCGGTGAAGAGATTAATTCAATGGTGGCTGAATTCGAAGCTTCGATTACGAAAGA 1019
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 954 GAATCTTGGTGAAGAGATTAATTCAATGGTGGCTGAATTCGAAGCTTCGATTACGAAAGA 1013
Query 1020 ATCTTCGAAAACCCCAATCCGTGGAGGCAGTGTTCATCAGCTCACAAGGTACGTAATGAA 1079
|||||||||| | ||||||| ||||||| | |||||||||||||||||||||||||||||
Sbjct 1014 ATCTTCGAAATCTCCAATCCCTGGAGGCGGAGTTCATCAGCTCACAAGGTACGTAATGAA 1073
Query 1080 TTTCATCGTTTTTCTCGCGGATTACCACGAATGTCTCGCTGGAGTTCTCACCGAATCGAC 1139
|||||||||||| |||||||||||||| |||||||| ||||||||||| || ||||||||
Sbjct 1074 TTTCATCGTTTTCCTCGCGGATTACCATGAATGTCTAGCTGGAGTTCTAACTGAATCGAC 1133
Query 1140 GTTGCCATTACCGGAAGATTACTTTGGGAACAATGACGAAGACAACAACGAAGGAGAAAC 1199
|||||||||||||||||||||||||||||||||||||||||| ||||| || ||||||||
Sbjct 1134 GTTGCCATTACCGGAAGATTACTTTGGGAACAATGACGAAGATAACAAGGACGGAGAAAC 1193
Query 1200 CGGATCTTC-T-T-CTACT--G-TAACCACAAGAATTGCATGGCTAATCCTCGTCTTGCT 1253
| ||||||| | | || || | ||||||||||||||||||||||||||||||| |||||
Sbjct 1194 CAGATCTTCATCTTCTTCTACGGTAACCACAAGAATTGCATGGCTAATCCTCGTATTGCT 1253
Query 1254 CTGTAAAATCGACACGAAATCTCGAATGTACAACGACATGGCTCTTTCATACCTCTTCCT 1313
|||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1254 CTGTAAAATCGATACGAAATCTCGAATGTACAACGACATGGCTCTTTCATATCTCTTCCT 1313
Query 1314 AGCCAACAATCTGCATTACGTGATCTCCAAGGTACGTACATCGAATATGAGAGTCGTGCT 1373
|||||||||||||||||||||||||||||||||||||||||||||| |||| || |||||
Sbjct 1314 AGCCAACAATCTGCATTACGTGATCTCCAAGGTACGTACATCGAATCTGAGGGTTGTGCT 1373
Query 1374 TGGCGACGAATGGGTAACGAATCACGAAGGGAAAGTTACTCAGTACCTCGAAAAATACGA 1433
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1374 TGGCGACGAATGGGTAACGAATCACGAAGGGAAAGTTACTCAATACCTCGAAAAATACGA 1433
Query 1434 GAAAATTGCTTGGGGAGAAGTGATAACGTCACTTTTCGATTCCAACGAAGAAATGCTCGA 1493
|||||| ||||||||||||||||| | ||| |||| |||||| ||||||||||||||| |
Sbjct 1434 GAAAATCGCTTGGGGAGAAGTGATTATGTCGCTTTCCGATTCAAACGAAGAAATGCTCAA 1493
Query 1494 AGAACACGTGGCGAAAGAGCGGTTGATGCGGTTCAACGAAGGGTTTGAGGAAGCGTTTCA 1553
|||| ||||||||||||||||||| | |||||||||||| | ||| ||||||||||||||
Sbjct 1494 AGAAAACGTGGCGAAAGAGCGGTTAAAGCGGTTCAACGACGCGTTCGAGGAAGCGTTTCA 1553
Query 1554 GAAACAGAGTGAGTGGGTCGTACCGGATTCGAAACTTAGAGACGATTTAAAAGATTCCGT 1613
||||||||| || ||||| | ||||||||||||||| ||| |||||||||||||||||||
Sbjct 1554 GAAACAGAGCGAATGGGTAGCACCGGATTCGAAACTAAGAAACGATTTAAAAGATTCCGT 1613
Query 1614 GACGGAGAAGTTAACAACTGTTACGACGACGTTTTATGAAAAGTACCACGTTGAAAATTG 1673
|||| |||||||||| |||| ||||| ||||||||| |||||||||||| ||||||||
Sbjct 1614 GACGAAGAAGTTAACGTCTGTCGCGACGTCGTTTTATGCAAAGTACCACGTCGAAAATTG 1673
Query 1674 GGAGGAAGTCAAATTTGCCCCTGAAGATTTGGATAATTACCTCTCTGACCTTTTCTTAGG 1733
||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1674 GGAGGAAGTCAGATTTGCCCCTGAAGATTTGGGTAATTACCTCTCTGACCTTTTCTTAGG 1733
Query 1734 TACGGGACGATCTTGTATTATCGTTCCTTCGCTTAAACAATCGGACTCGGGACGTTCACT 1793
||||||||| || |||||||| |||||||||||||||| |||||||||||||||||||||
Sbjct 1734 TACGGGACGGTCGTGTATTATTGTTCCTTCGCTTAAACCATCGGACTCGGGACGTTCACT 1793
Query 1794 TAAAGATTCAGAATCAGGACGTTGA 1818
||| ||||||||||||||||||||
Sbjct 1794 CAAAAATTCAGAATCAGGACGTTGA 1818
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 68257719040
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5