BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G28650.1
Length=1894
Score E
Sequences producing significant alignments: (Bits) Value
Ahg497328 jgi|Araly1|497328|fgenesh2_kg.228__1__AT2G28650.1 2318 0.0
Ahg344649 jgi|Araly1|344649|fgenesh1_pg.C_scaffold_4000991 2287 0.0
> Ahg497328 jgi|Araly1|497328|fgenesh2_kg.228__1__AT2G28650.1
Length=1717
Score = 2318 bits (1255), Expect = 0.0
Identities = 1585/1742 (91%), Gaps = 32/1742 (2%)
Strand=Plus/Plus
Query 55 AAACACAAAAATGGTACTCTTCACTTTATCAACAActtcttcttcttcttctAAGCTAAA 114
|||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||
Sbjct 1 AAACACAAAAATGGTACTCTTCGCTTTATCAACGACTTCTTCTTCTTCTTCTAAGCTAAA 60
Query 115 ACAACATTCACACCAAAGCTTCTCAGAGTCTCTAATGGAACACACTATCGAAGACGCTGA 174
||||||||||||||||||||| | |||||||||||||||| | | | |||||||||||||
Sbjct 61 ACAACATTCACACCAAAGCTTTTTAGAGTCTCTAATGGAAGATAGTCTCGAAGACGCTGA 120
Query 175 ATCCATCATCCATCGATGGATTTCACCAGAACACGTCCACT-CTTCTTCCTTCTGCTTCA 233
||| | ||| | | |||||||||||| |||| |||| | | ||||||| ||||||||||
Sbjct 121 ATCTACCATAAACCAATGGATTTCACCGGAACTCGTCGA-TGCTTCTTCTTTCTGCTTCA 179
Query 234 TCTCATCGCTATTTTCAACCGAAAACCGCGAAGAAGCGAAACGATTCATCGACGCTGTTA 293
||||||||||||||||||||||||||||||||||||| |||||||||||| || |||| |
Sbjct 180 TCTCATCGCTATTTTCAACCGAAAACCGCGAAGAAGCCAAACGATTCATCAACACTGTAA 239
Query 294 CCACCTTACACTCCGGTATGATAAGACTAATCTCAGTGAATCCAACGTCAATGAAACTCG 353
|| ||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||
Sbjct 240 ACAACTTACACTCCGGTATGATAAGACTAATCTCAGTAAATCCAACGTCAACGAAACTCG 299
Query 354 TTAAAGCAGAGAATCTAATGCGTATCTCAATGACTCATCTCTCCAAAGAGTTTTACCGCA 413
||||||| |||||||||||||| ||||| |||| ||||||||||||||||||||||||||
Sbjct 300 TTAAAGCCGAGAATCTAATGCGAATCTCCATGAATCATCTCTCCAAAGAGTTTTACCGCA 359
Query 414 TTCTCAAATCGAACCGACGTTATCTCGACCCCGAATCCGTCTCTATCCGTTCTTCAAAAG 473
|||| ||||| || ||||| || |||||||||||||||||||||||||||||||||||||
Sbjct 360 TTCTTAAATCAAATCGACGCTACCTCGACCCCGAATCCGTCTCTATCCGTTCTTCAAAAG 419
Query 474 CTTCCGATTCCGACTCCGATTCCGATTCCAACACCATGGATGATCTAAAGATGATCGCGG 533
||||||||||||||||||| | | | |||| | ||| |||||||||||||||
Sbjct 420 CTTCCGATTCCGACTCCGA-T--G--T-------CATGAAAGATTTAAAGATGATCGCGG 467
Query 534 ATTGTATGATATCATCTGGCTACAGCAAAGAATGCTTTAAAATCTACAA-AAGAATCCGT 592
|||||||||||||||| || || |||||||||||||||||||| ||||| || |||||||
Sbjct 468 ATTGTATGATATCATCCGGATATAGCAAAGAATGCTTTAAAATATACAAGAA-AATCCGT 526
Query 593 AAATCGATCATTAACGAAGCGTTAAACCAACTCGGATTCGAGAATTTAACGTTTTCGCAG 652
|||||||| || ||||||| |||| ||||| |||||||||||| ||||||||||||||
Sbjct 527 AAATCGATAATCGTCGAAGCGATAAATCAACTTGGATTCGAGAATCTAACGTTTTCGCAG 586
Query 653 ATTCAGAAACTTGAATGGGAAGTTATGGAGAAGAAGATACGTAAATGGTTAAGAACAACA 712
|| ||||||||| |||||||||||||||||||||||||||| ||||||||| || |||
Sbjct 587 ATACAGAAACTTAAATGGGAAGTTATGGAGAAGAAGATACGAAAATGGTTACGAGTTACA 646
Query 713 ACAAGAGCAGTGAATACTCTGTTTTCCGGTGAACAAATCCTCTCCGATCATGTCTTCTCT 772
|||||| | |||||||||||||||||||| |||| ||||||||||||||| |||||||||
Sbjct 647 ACAAGAACTGTGAATACTCTGTTTTCCGGCGAACGAATCCTCTCCGATCACGTCTTCTCT 706
Query 773 TCATCATCATCAACAATTCGTGAATCTGCATTTGCAGAAATCACATCACAAACCGCTTTA 832
|||||||||||| ||||||||||||||||||||||||||||||||| ||||| |||||||
Sbjct 707 TCATCATCATCATCAATTCGTGAATCTGCATTTGCAGAAATCACATTACAAAGCGCTTTA 766
Query 833 GCTTTGTTCACTTTCCCGGAAAAAATGGCGAAATGTCGAAAATCTCCGGAGAAGATCTTC 892
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 767 GCTTTGTTTACTTTCCCGGAAAAAATGGCGAAATGTCGAAAATCTCCGGAGAAGATCTTT 826
Query 893 CTCACTCTCGATGTTTATCAAACGATCGTTGATCTATTACCTAAGATCAACGAACTCTTT 952
|| |||||||||||||||||||| ||| | |||||||| ||||||||| ||||||||||
Sbjct 827 CTGACTCTCGATGTTTATCAAACAATCATCGATCTATTGCCTAAGATCGACGAACTCTTC 886
Query 953 AGCTCTGATTCAACCTCCACCGTTAGATCACAAGTCGATTTAACATTAGTGAATCTCAGA 1012
||||| ||||||||||||||||| ||||||||| ||| ||||| |||| |||||||||
Sbjct 887 AGCTCCGATTCAACCTCCACCGTCAGATCACAAATCGCTTTAAGTTTAGCAAATCTCAGA 946
Query 1013 GAAGGTGTGGTTTCGATGATCGACGAGTTCGAATCTTCGATTTCGAAAGAATCATCGAAA 1072
||||||||| ||||||||||||| || |||||||||||||||||||||||||| ||||||
Sbjct 947 GAAGGTGTGATTTCGATGATCGATGAATTCGAATCTTCGATTTCGAAAGAATCGTCGAAA 1006
Query 1073 TCGTTAATCTCCGGTGGTGGAATTCATCAATTGACAAGGTATGTAATGAATTTCATCGTC 1132
|||||||||||||| |||||||||||||||||||| |||||||| ||||||||||||| |
Sbjct 1007 TCGTTAATCTCCGGAGGTGGAATTCATCAATTGACGAGGTATGTGATGAATTTCATCGCC 1066
Query 1133 TTCCTCGCTGATTACAGTGATACACTCTCCGATATCATCTCGAAACCGTCGTTACCTTCA 1192
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1067 TTCCTCGCTGATTACAGTGATACACTCTCCGATATCATCTCGAAACCGTTGTTACCTTCA 1126
Query 1193 CCGGAAGAAGAAAAAGACTCCGGAGATTCGTCACCGGTGAAATCACGAATCTCGAGGTTG 1252
|||||||||| |||| |||||| ||||| || ||||||||||| |||||| || || ||
Sbjct 1127 CCGGAAGAAG--AAAG-CTCCGGTGATTCATCTCCGGTGAAATCGCGAATCGCGTGGCTG 1183
Query 1253 ATTTTGTTCTTACTCTGTAAAATCGACGCCAAGTCTCGTCTCTATAACGACGTAGCTCTC 1312
||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1184 ATTTTGTTCTTACTCTGCAAAATCGACGCGAAGTCTCGTCTCTATAACGACGTAGCTCTC 1243
Query 1313 TCGTATCTGTTTTTGATTAATAACGTTAATTACGTTGTTGTTAAAGTCCGATCTTCGAAT 1372
||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 1244 TCGTATCTGTTTTTGATTAATAATGTTAATTACGTTGTTGTTAAAGTCCGATCGTCGAAT 1303
Query 1373 TTGAAGACGGTTTTGAGTGAGGATTGGGTTAAGAAGCATGAAGCGAAGGTGAAGAAGTAT 1432
||| || ||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1304 CTGAGGATGGTTTTGAGTGAGGATTGGGTTAAGAAGCATGAAGGGAAGGTGAAGAAGTAC 1363
Query 1433 GTGGCGAA-GTTTGAGGAGATTGTTTGGGGAGAGATGATGACGTCACTTTCTGATGATGT 1491
| | ||| ||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1364 GCCG-GAAAGTTTGAGGAGATTGTTTGGGGAGAGGTGATGACGTCACTTTCTGATGATGT 1422
Query 1492 GACGATGACTGCGGAGGA-AGGGATTA-AGCGGTTTAGTGATGGGTTTGAGGAAGCGTAT 1549
||||| | |||||||| ||| |||| | ||||||||||||||||||||||||||||||
Sbjct 1423 GACGACG---GCGGAGGAGAGG-ATTAGA-CGGTTTAGTGATGGGTTTGAGGAAGCGTAT 1477
Query 1550 AAGAGACAAACCGGTTGGATTGTACCGGATTCGAAATTGAGAGATGAGATTAAACGGTCT 1609
||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1478 AAGAGGCAAACCGGTTGGGTTGTACCGGATTCGAAATTGAGAGATGAGATTAAACGGTCT 1537
Query 1610 GTTGGGATGATGATTATACCGAGATATTCCGGGTTTT-GTGAAAGGAACCGGGTCAGGTT 1668
|| |||||||||||||||||||||||||| ||||||| |||||||| | |||||| ||||
Sbjct 1538 GTGGGGATGATGATTATACCGAGATATTC-GGGTTTTTGTGAAAGGTATCGGGTCGGGTT 1596
Query 1669 ATTGGAGAATGTCGGATTTGACCCTGAGGATATTGGGAATTATCTTTCGGATTTGTATTT 1728
||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1597 ATTAGAGAATGTCGGATTTGCCCCTGAGGATATTGGGAATTATCTTTCGGATTTGTATTT 1656
Query 1729 TGGGTCTGGTGGATCAGGGAGTGGTTCGTCAGTTC-ATTCTTCGGGTTCTTCTGTTTAAC 1787
||||||| ||||||||||||||| |||||| ||| ||||||| ||||| ||||||| ||
Sbjct 1657 TGGGTCTCGTGGATCAGGGAGTGTTTCGTCT-TTCCATTCTTCTGGTTCCTCTGTTTGAC 1715
Query 1788 AC 1789
||
Sbjct 1716 AC 1717
> Ahg344649 jgi|Araly1|344649|fgenesh1_pg.C_scaffold_4000991
Length=1701
Score = 2287 bits (1238), Expect = 0.0
Identities = 1569/1726 (91%), Gaps = 33/1726 (2%)
Strand=Plus/Plus
Query 65 ATGGTACTCTTCACTTTATCAACAActtcttcttcttcttctAAGCTAAAACAACATTCA 124
|||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGTACTCTTCGCTTTATCAACGACTTCTTCTTCTTCTTCTAAGCTAAAACAACATTCA 60
Query 125 CACCAAAGCTTCTCAGAGTCTCTAATGGAACACACTATCGAAGACGCTGAATCCATCATC 184
||||||||||| | |||||||||||||||| | | | |||||||||||||||| | |||
Sbjct 61 CACCAAAGCTTTTTAGAGTCTCTAATGGAAGATAGTCTCGAAGACGCTGAATCTACCATA 120
Query 185 CATCGATGGATTTCACCAGAACACGTCCACT-CTTCTTCCTTCTGCTTCATCTCATCGCT 243
| | |||||||||||| |||| |||| | | ||||||| ||||||||||||||||||||
Sbjct 121 AACCAATGGATTTCACCGGAACTCGTCGA-TGCTTCTTCTTTCTGCTTCATCTCATCGCT 179
Query 244 ATTTTCAACCGAAAACCGCGAAGAAGCGAAACGATTCATCGACGCTGTTACCACCTTACA 303
||||||||||||||||||||||||||| |||||||||||| || |||| | || ||||||
Sbjct 180 ATTTTCAACCGAAAACCGCGAAGAAGCCAAACGATTCATCAACACTGTAAACAACTTACA 239
Query 304 CTCCGGTATGATAAGACTAATCTCAGTGAATCCAACGTCAATGAAACTCGTTAAAGCAGA 363
||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||| ||
Sbjct 240 CTCCGGTATGATAAGACTAATCTCAGTAAATCCAACGTCAACGAAACTCGTTAAAGCCGA 299
Query 364 GAATCTAATGCGTATCTCAATGACTCATCTCTCCAAAGAGTTTTACCGCATTCTCAAATC 423
|||||||||||| ||||| |||| |||||||||||||||||||||||||||||| |||||
Sbjct 300 GAATCTAATGCGAATCTCCATGAATCATCTCTCCAAAGAGTTTTACCGCATTCTTAAATC 359
Query 424 GAACCGACGTTATCTCGACCCCGAATCCGTCTCTATCCGTTCTTCAAAAGCTTCCGATTC 483
|| ||||| || |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 AAATCGACGCTACCTCGACCCCGAATCCGTCTCTATCCGTTCTTCAAAAGCTTCCGATTC 419
Query 484 CGACTCCGATTCCGATTCCAACACCATGGATGATCTAAAGATGATCGCGGATTGTATGAT 543
||||||||| | | | |||| | ||| |||||||||||||||||||||||||
Sbjct 420 CGACTCCGA-T--G--T-------CATGAAAGATTTAAAGATGATCGCGGATTGTATGAT 467
Query 544 ATCATCTGGCTACAGCAAAGAATGCTTTAAAATCTACAA-AAGAATCCGTAAATCGATCA 602
|||||| || || |||||||||||||||||||| ||||| || ||||||||||||||| |
Sbjct 468 ATCATCCGGATATAGCAAAGAATGCTTTAAAATATACAAGAA-AATCCGTAAATCGATAA 526
Query 603 TTAACGAAGCGTTAAACCAACTCGGATTCGAGAATTTAACGTTTTCGCAGATTCAGAAAC 662
| ||||||| |||| ||||| |||||||||||| |||||||||||||||| |||||||
Sbjct 527 TCGTCGAAGCGATAAATCAACTTGGATTCGAGAATCTAACGTTTTCGCAGATACAGAAAC 586
Query 663 TTGAATGGGAAGTTATGGAGAAGAAGATACGTAAATGGTTAAGAACAACAACAAGAGCAG 722
|| |||||||||||||||||||||||||||| ||||||||| || ||||||||| | |
Sbjct 587 TTAAATGGGAAGTTATGGAGAAGAAGATACGAAAATGGTTACGAGTTACAACAAGAACTG 646
Query 723 TGAATACTCTGTTTTCCGGTGAACAAATCCTCTCCGATCATGTCTTCTCTTCATCATCAT 782
||||||||||||||||||| |||| ||||||||||||||| |||||||||||||||||||
Sbjct 647 TGAATACTCTGTTTTCCGGCGAACGAATCCTCTCCGATCACGTCTTCTCTTCATCATCAT 706
Query 783 CAACAATTCGTGAATCTGCATTTGCAGAAATCACATCACAAACCGCTTTAGCTTTGTTCA 842
|| ||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct 707 CATCAATTCGTGAATCTGCATTTGCAGAAATCACATTACAAAGCGCTTTAGCTTTGTTCA 766
Query 843 CTTTCCCGGAAAAAATGGCGAAATGTCGAAAATCTCCGGAGAAGATCTTCCTCACTCTCG 902
||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||
Sbjct 767 CTTTCCCGGAAAAAATGGCGAAATGTCGAAAATCTCCGGAGAAGATCTTTCTGACTCTCG 826
Query 903 ATGTTTATCAAACGATCGTTGATCTATTACCTAAGATCAACGAACTCTTTAGCTCTGATT 962
||||||||||||| ||| | |||||||| |||||||| |||||||||| ||||| ||||
Sbjct 827 ATGTTTATCAAACAATCATCGATCTATTGCCTAAGATTGACGAACTCTTCAGCTCCGATT 886
Query 963 CAACCTCCACCGTTAGATCACAAGTCGATTTAACATTAGTGAATCTCAGAGAAGGTGTGG 1022
||||||||||||| ||||||||| ||| ||||| |||| ||||||||||||||||||
Sbjct 887 CAACCTCCACCGTCAGATCACAAATCGCTTTAAGTTTAGCAAATCTCAGAGAAGGTGTGA 946
Query 1023 TTTCGATGATCGACGAGTTCGAATCTTCGATTTCGAAAGAATCATCGAAATCGTTAATCT 1082
||||||||||||| || |||||||||||||||||||||||||| ||||||||||||||||
Sbjct 947 TTTCGATGATCGATGAATTCGAATCTTCGATTTCGAAAGAATCGTCGAAATCGTTAATCT 1006
Query 1083 CCGGTGGTGGAATTCATCAATTGACAAGGTATGTAATGAATTTCATCGTCTTCCTCGCTG 1142
|||| |||||||||||||||||||| |||||||| ||||||||||||| |||||||||||
Sbjct 1007 CCGGAGGTGGAATTCATCAATTGACGAGGTATGTGATGAATTTCATCGCCTTCCTCGCTG 1066
Query 1143 ATTACAGTGATACACTCTCCGATATCATCTCGAAACCGTCGTTACCTTCACCGGAAGAAG 1202
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1067 ATTACAGTGATACACTCTCCGATATCATCTCGAAACCGTTGTTACCTTCACCGGAAGAAG 1126
Query 1203 AAAAAGACTCCGGAGATTCGTCACCGGTGAAATCACGAATCTCGAGGTTGATTTTGTTCT 1262
|||| |||||| ||||| || ||||||||||| |||||| || || ||||||||||||
Sbjct 1127 --AAAG-CTCCGGTGATTCATCTCCGGTGAAATCGCGAATCGCGTGGCTGATTTTGTTCT 1183
Query 1263 TACTCTGTAAAATCGACGCCAAGTCTCGTCTCTATAACGACGTAGCTCTCTCGTATCTGT 1322
||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1184 TACTCTGCAAAATCGACGCGAAGTCTCGTCTCTATAACGACGTAGCTCTCTCGTATCTGT 1243
Query 1323 TTTTGATTAATAACGTTAATTACGTTGTTGTTAAAGTCCGATCTTCGAATTTGAAGACGG 1382
||||||||||||| ||||||||||||||||||||||||||||| |||||| ||| || ||
Sbjct 1244 TTTTGATTAATAATGTTAATTACGTTGTTGTTAAAGTCCGATCGTCGAATCTGAGGATGG 1303
Query 1383 TTTTGAGTGAGGATTGGGTTAAGAAGCATGAAGCGAAGGTGAAGAAGTATGTGGCGAA-G 1441
||||||||||||||||||||||||||||||||| ||||||||||||||| | | ||| |
Sbjct 1304 TTTTGAGTGAGGATTGGGTTAAGAAGCATGAAGGGAAGGTGAAGAAGTACGCCG-GAAAG 1362
Query 1442 TTTGAGGAGATTGTTTGGGGAGAGATGATGACGTCACTTTCTGATGATGTGACGATGACT 1501
|||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
Sbjct 1363 TTTGAGGAGATTGTTTGGGGAGAGGTGATGACGTCACTTTCTGATGATGTGACGACG--- 1419
Query 1502 GCGGAGGA-AGGGATTA-AGCGGTTTAGTGATGGGTTTGAGGAAGCGTATAAGAGACAAA 1559
|||||||| ||| |||| | ||||||||||||||||||||||||||||||||||| ||||
Sbjct 1420 GCGGAGGAGAGG-ATTAGA-CGGTTTAGTGATGGGTTTGAGGAAGCGTATAAGAGGCAAA 1477
Query 1560 CCGGTTGGATTGTACCGGATTCGAAATTGAGAGATGAGATTAAACGGTCTGTTGGGATGA 1619
|||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1478 CCGGTTGGGTTGTACCGGATTCGAAATTGAGAGATGAGATTAAACGGTCTGTGGGGATGA 1537
Query 1620 TGATTATACCGAGATATTCCGGGTTTT-GTGAAAGGAACCGGGTCAGGTTATTGGAGAAT 1678
||||||||||||||||||| ||||||| |||||||| | |||||| ||||||| ||||||
Sbjct 1538 TGATTATACCGAGATATTC-GGGTTTTTGTGAAAGGTATCGGGTCGGGTTATTAGAGAAT 1596
Query 1679 GTCGGATTTGACCCTGAGGATATTGGGAATTATCTTTCGGATTTGTATTTTGGGTCTGGT 1738
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1597 GTCGGATTTGCCCCTGAGGATATTGGGAATTATCTTTCGGATTTGTATTTTGGGTCTCGT 1656
Query 1739 GGATCAGGGAGTGGTTCGTCAGTTCATTCTTCGGGTTCTTCTGTTT 1784
|||||||||||| | |||| |||||||||| ||||| |||||||
Sbjct 1657 GGATCAGGGAGT--T-CGTCTTTTCATTCTTCTGGTTCCTCTGTTT 1699
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 71152577660
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5