BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G28660.1
Length=1063
Score E
Sequences producing significant alignments: (Bits) Value
Ahg481779 jgi|Araly1|481779|fgenesh2_kg.4__839__AT2G28660.1 1411 0.0
> Ahg481779 jgi|Araly1|481779|fgenesh2_kg.4__839__AT2G28660.1
Length=1027
Score = 1411 bits (764), Expect = 0.0
Identities = 968/1059 (91%), Gaps = 43/1059 (4%)
Strand=Plus/Plus
Query 3 TTCCCTTAAAATCAACAGACAGAAAGTGAGTGTTATAGACTTATAGTgag-aa-agagat 60
|||||||||||||||||||||||||||||||||||||||||||||||| | || ||||||
Sbjct 1 TTCCCTTAAAATCAACAGACAGAAAGTGAGTGTTATAGACTTATAGTGCGAAAGAGAGAT 60
Query 61 aaagatagaaagaaaagagagaaaaagagagaatgagaTTTAGTGATATTTTCTGCTCTT 120
||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 61 AAAGATAGAAA-AAAAGAGAGAAAAAGAGAGAATGAGAATTAGTGATATTTTCTGCTCTT 119
Query 121 CTCCGGCATCAACCGCCGTACGA-CATAGTACACTTCACCACGACGGAAATGTTACCGGA 179
||||||||||||||||| ||||| || ||||||||||||||||||||||| || ||||||
Sbjct 120 CTCCGGCATCAACCGCCATACGACCA-AGTACACTTCACCACGACGGAAAGGTGACCGGA 178
Query 180 GGTCGCAGAT-CTTTCCAAAGCCACCTCCGGAGCCAAAACCCTAGTAAGAAGAAGGATAA 238
|| ||||||| |||| |||||||||||||| ||||||||||||| || |||||||| ||
Sbjct 179 GGCCGCAGATCCTTT-GAAAGCCACCTCCGGGGCCAAAACCCTAGCAACAAGAAGGACAA 237
Query 239 AACTGTCCCTTGCTTCTCTTCCGAGATGCCTTTAATCCCTATTCCTCGTCACTTGAGCTG 298
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 238 AACCGTCCCTTGCTTCTCTTCCGAGATGCCTTTAATCCCTATTCCTCGTCACTTGAGCTG 297
Query 299 TAGAAACTCCTTTGAATCTCCAAGCGGGTTTCGTCCGAAAATCGCTTCGGCTCGCGGTAG 358
||||||||||||||||||| ||||||||||||||| ||| |||||||| |||| |||| |
Sbjct 298 TAGAAACTCCTTTGAATCTTCAAGCGGGTTTCGTCAGAAGATCGCTTCAGCTCACGGTGG 357
Query 359 CGATGTTCAAATCCGCCGGAAAAGCTCTGCTGACGTAAGTGACTTGAGGAGATCAAGGAG 418
||||||||||||||||||||||||||| ||||||||||||||||| ||| || ||
Sbjct 358 CGATGTTCAAATCCGCCGGAAAAGCTCAGCTGACGTAAGTGACTT---GAG---AA-GA- 409
Query 419 TTCTCTGCTAAGCTCATCGTCCAGGTATCTT-TTAAAAGATCATAAGTCTTTGAAAGGTG 477
| | ||| | ||||||||| || || ||||||||| ||||||||| |
Sbjct 410 -----T-C-AAG------G---AGGTATCTTCTT-AAGGATCATAAGACTTTGAAAGAAG 452
Query 478 ATGATAAGGACCTCTGG-T-T-ATCATCGGATCGTTCTAAAGATTTGATT-CTTTACCGT 533
|||||||||||||||| | | |||||||||||||||||||||||||||| |||| ||||
Sbjct 453 GTGATAAGGACCTCTGGTTATCATCATCGGATCGTTCTAAAGATTTGATTCCTTT-CCGT 511
Query 534 GACCGCAACGTAActtcttcagcctcatcatcttcttcgtcttcttcatcatctttc-tc 592
||||| ||||||||||||||| | |||||||||||||| |||||||| || || || ||
Sbjct 512 GACCGTAACGTAACTTCTTCATCTTCATCATCTTCTTCTTCTTCTTCCTCGTC-GTCTTC 570
Query 593 ttcttctGTGACCAATGTTTCATCGCCGGCTCCATCCACTGATGACCAGGTTGTTGTTTT 652
|||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||
Sbjct 571 TTCTTCTGTGACCAATGTTTCATCGCCGGCTCCATCCAGTGATGACCAGGTTGTGGTTTT 630
Query 653 GAGGGTATCAATCCATTGCAAGGGATGTGAAGGAAAGGTTAGAAAGCATATCTCCAAAAT 712
||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 631 GAGGGTATCGATCCATTGCAAGGGATGTGAAGGGAAGGTTAGAAAGCATATCTCCAAAAT 690
Query 713 GGAAGGGGTGACGTCATACACTATTGATTTAGCGACAAAGAAGGTGACGGTGGTCGGAAA 772
||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||
Sbjct 691 GGAAGGGGTGACGTCATACACCATAGATTTAGCGACAAAGAAGGTGACGGTGGTCGGAAA 750
Query 773 GATAACACCCGTCGGACTAGTAGAAAGCATCTCAAAGGTCAAATTCGCTCAGCTTTGGCC 832
||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 751 GATAACACCTGTCGGAGTAGTAGAAAGCATCTCAAAGGTCAAATTCGCTCAGCTTTGGCC 810
Query 833 TTCCTCTTCTTCTCCTCCATTTCCTCACATTCCTAATTATTCACTCCTCAAATCTTAATC 892
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 811 TTCCTCTTCTTCTCCTCCATTTCCTCACATTCCTAATTATTCACTCCTCAAATCTTAATC 870
Query 893 TGTTTTCTTGTTATT-AGTTCAAAGGCTATGGTCATTAGACATATGTCATGTTGTGATTC 951
||||||||||||||| |||||||| |||| |||||||||||||||||||| |||||||||
Sbjct 871 TGTTTTCTTGTTATTGAGTTCAAAAGCTACGGTCATTAGACATATGTCATTTTGTGATTC 930
Query 952 GTATCAATGCGACATTAATGTGGTGTAGTTTAACATACATATACACACATGTTTGTAGCA 1011
||| |||||||||||||| ||||||| |||||||||| ||||||||| |||||| ||||
Sbjct 931 GTACCAATGCGACATTAAGGTGGTGTTGTTTAACATATATATACACA--TGTTTGAAGCA 988
Query 1012 GGTGGTTTTGTTTTTCTCTTTCCGACAACTAAATTTCAT 1050
||||||||||||||| |||||||||||||||||||||||
Sbjct 989 GGTGGTTTTGTTTTTTTCTTTCCGACAACTAAATTTCAT 1027
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39571587846
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5