BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G28671.1
Length=1834
Score E
Sequences producing significant alignments: (Bits) Value
Ahg481780 jgi|Araly1|481780|fgenesh2_kg.4__840__AT2G28671.1 2019 0.0
> Ahg481780 jgi|Araly1|481780|fgenesh2_kg.4__840__AT2G28671.1
Length=1512
Score = 2019 bits (1093), Expect = 0.0
Identities = 1391/1527 (91%), Gaps = 52/1527 (3%)
Strand=Plus/Minus
Query 32 TTTGCTCCAAACAAATCAGTAATTTCAAGAA--AAGaaaaaaaaGTACATACAATTTTCT 89
||||||||||| ||||||||||| ||| ||| || |||| |||||| ||||||||||||
Sbjct 1512 TTTGCTCCAAAGAAATCAGTAATATCAGGAATTAA-AAAAGAAAGTAAATACAATTTTCT 1454
Query 90 TACACAAATTTCATATTTAGATTACAAATGACACACATAACATACACACCAAACATTCCC 149
||||||| |||||||| ||||||||||| ||||||||| |||||||||||||||||||||
Sbjct 1453 TACACAAGTTTCATATGTAGATTACAAAGGACACACATCACATACACACCAAACATTCCC 1394
Query 150 AAACCCCAACAAAAGAAGAAAAATAAAACTAGTAAGAAAGATAAACGGTACACTCAACAA 209
|||| |||||| |||||||||||||||||||||| |||||||||||||||||||| | ||
Sbjct 1393 AAACTCCAACAGAAGAAGAAAAATAAAACTAGTACGAAAGATAAACGGTACACTCGAGAA 1334
Query 210 CAGTCTCAAGCCCATCAGTGAACTGATGCGGCTGATTCTGCTGCGTCCCGCTAGATCCTG 269
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1333 CAGTCTCAAGCCCATCAGTGAACTGATGCGGCTGATTCTGCTGCGTCCCGCTAGATCCTG 1274
Query 270 TAAACGTCTTCAGAATCGCGAATCCCCTCGCATTCACATACTTTCCGGTACCTCCCATTA 329
|||||||||| ||||| || ||||||||||||||||||||||||||||| |||||||| |
Sbjct 1273 TAAACGTCTTTAGAATAGCAAATCCCCTCGCATTCACATACTTTCCGGTTCCTCCCATAA 1214
Query 330 CTCCTATATGCGATTCTGATACCGCTGTTCTGAGAACCCCAAAGAAGCTTATACTATCTT 389
|||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct 1213 CTCCTATATGCGATTCCGAAACCGCTGTTCTGAGAACCCCAAAGAAGCTTATACTATCTT 1154
Query 390 CATAACCGCCGCTTTCAAACATCGCGGTGAAAGCCATTGTCTGGCTAGTTCCGTCAATTG 449
||||||||||||| ||||||||||| |||||||||| ||||||||||||||||||||| |
Sbjct 1153 CATAACCGCCGCTCTCAAACATCGCAGTGAAAGCCAATGTCTGGCTAGTTCCGTCAATGG 1094
Query 450 CACTCGCCACATAATATCCCTGCGCTTTCCCGAGTAAGCCAGATCCGAGCTCATGGCCTT 509
||||||| |||||||||||||||||||||||||| || ||||||||||||||||||||||
Sbjct 1093 CACTCGCAACATAATATCCCTGCGCTTTCCCGAGCAAACCAGATCCGAGCTCATGGCCTT 1034
Query 510 CAGTTAGTTCATCATCGATTACTGTCATTGTCCCGAACATTAGCATCTGAAGAGCAGAAC 569
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1033 CGGTTAGTTCATCATCGATTACTGTCATTGTCCCGAACATTAGCATCTGAAGAGCAGAAC 974
Query 570 CGCTCGGGAGCTGACCGCCACTAGCAACAGGGAAACCATTTAAAATGTTGTTTCCGTTAT 629
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 973 CGCTTGGGAGCTGACCGCCACTAGCAACAGGGAAACCATTTAAAATGTTGTTTCCGTTAT 914
Query 630 TGTTGTTCTGGAGAATGTTAGCTGTGGTTCCGCCGAGTCCAACGAGGAAAGGGACAttgt 689
|||||||||||||||||||||| |||||||||||||||||||| ||||||||||| ||||
Sbjct 913 TGTTGTTCTGGAGAATGTTAGCCGTGGTTCCGCCGAGTCCAACCAGGAAAGGGACGTTGT 854
Query 690 tgttgttgacaatcccattgttgttgttgtttgACGGAACTCCGTTGCTTACAGGAAGGT 749
|||||||||||||||| |||||||||||||| || |||||||||||||||||||||||||
Sbjct 853 TGTTGTTGACAATCCCGTTGTTGTTGTTGTTCGATGGAACTCCGTTGCTTACAGGAAGGT 794
Query 750 TTGCGCCGTTGGGTTTAGCAAATGGAAGTTGCCCGCTTAAAGCCGGATTTGCGACGACTC 809
|||| |||||||||||||||||||| ||||| |||||||||||||| || ||||||||||
Sbjct 793 TTGCACCGTTGGGTTTAGCAAATGGGAGTTGGCCGCTTAAAGCCGGGTTCGCGACGACTC 734
Query 810 CAGTTACGGCTCTGGCAGTGGGATTTGAACCACCGAGTATATCATGCATAAAAAATACCA 869
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 733 CAGTTACGGCTCTGGCAGTGGGATTTGAACCACCGAGTATATCGTGCATAAAAAATACCA 674
Query 870 ACGTATTGTCAGGACC-AGCACTTGCACCACCACCAAGAGCTGAaccagaacctgcaaca 928
| || || |||||||| | ||| |||||||||||||||||| ||| | ||||||| |
Sbjct 673 ATGTGTTATCAGGACCTA-CAC---CACCACCACCAAGAGCTGGACCGGCACCTGCA-C- 620
Query 929 ccaccaccaagagctggaccagcacctgcaccaccaccaccaagagctggaccagcacct 988
| |||||||||||||||||| ||||| || || | |||||||||||||||||| |||||
Sbjct 619 C-ACCACCAAGAGCTGGACCGGCACCCGC-CC-C-ACCACCAAGAGCTGGACCGGCACCC 564
Query 989 gcaccaccaccaccaagagctgaaccagcacctgcaccaccaccaagagctggaccggca 1048
|||||||||||| | |||||| ||| ||||| || ||||||||||||||||||||||||
Sbjct 563 GCACCACCACCA--A-GAGCTGGACCGGCACCCGCCCCACCACCAAGAGCTGGACCGGCA 507
Query 1049 cccgcaccaccaccaagagctggaccggcacccgcaccaccaccaagagctgagccagca 1108
||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||
Sbjct 506 CCCGCACCACCACCAAGAGCTAGACCGGCACCCGCACCACCACCAAGAGCTGAACCAGCA 447
Query 1109 ccTGGACCACCTCCAAGAGCTGAACCGGTACCTGCACC---TGCACCAGTGGCTGAACCA 1165
|| | |||||| |||||||||| ||||| ||| ||||| || |||||| |||||||||
Sbjct 446 CCCGCACCACCACCAAGAGCTGGACCGGCACCCGCACCACCTGGACCAGTTGCTGAACCA 387
Query 1166 GTGG-TAGGCAAGGAACCTGAACCACCACCCGCTAAAGAACCAGGAACAGAACTGGCAGT 1224
| | || || ||||| |||||||||||| ||||||||||||||||||||| ||| ||
Sbjct 386 CCGACT-GGTAAAGAACCAGAACCACCACCCACTAAAGAACCAGGAACAGAACCGGCTGT 328
Query 1225 TGGTAGA--A---GA-CCAG--G-A--C------CT-GAACCACTTGATGGTATTGACCC 1266
||||||| | || |||| | | | || ||||||||| ||||||| |||||
Sbjct 327 TGGTAGAGGACCAGAACCAGTTGTAGTCAAAGGACTTGAACCACTTAATGGTATCGACCC 268
Query 1267 TGTACCTGCACCGAGACCGCTTCCAGTAGAACCTGAACCAGATGACCCTGATCCTGCACC 1326
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 267 TGTACCTGCACCGAGACCGGTTCCAGTAGAACCTGAACCAGATGACCCTGATCCTGCACC 208
Query 1327 AAAACCGAATCCCGTGGAACCTGAACCACTTGACCCTGTTCCTGCACCAAAACCAATTCC 1386
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 207 AAAACCGATTCCCGTGGAACCTGAACCACTTGACCCTGTTCCTGCACCAAAACCAATTCC 148
Query 1387 GGTGGAACCTGAACC-----T-GAGCCA-AG---G-G-TGGTTGTGGTAGCTGAGAATGC 1434
||||||||||| || | |||||| || | | | ||||||||||||||||||||
Sbjct 147 AGTGGAACCTGACCCAGCAGTTGAGCCAGAGCCAGAGGTTGTTGTGGTAGCTGAGAATGC 88
Query 1435 ATTTTCTTCATCAAGAAGCCGAGCCGCAGCTGCAAAAGTAACAACAAGAGCTATAACCAG 1494
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 87 ATCTTCTTCATCAAGAAGCCGAGCCGCAGCTGCAAAAGTAACAACAAGAGCTATAACCAG 28
Query 1495 TAAAGAAAGTATCTTTTGACCAGCCAT 1521
||||||||||||||||||||| |||||
Sbjct 27 TAAAGAAAGTATCTTTTGACCTGCCAT 1
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 68867162960
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5