BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G28680.1
Length=1278
Score E
Sequences producing significant alignments: (Bits) Value
Ahg481782 jgi|Araly1|481782|fgenesh2_kg.4__842__AT2G28680.1 1746 0.0
Ahg470808 jgi|Araly1|470808|fgenesh2_kg.1__762__AT1G07750.1 1129 0.0
> Ahg481782 jgi|Araly1|481782|fgenesh2_kg.4__842__AT2G28680.1
Length=1086
Score = 1746 bits (945), Expect = 0.0
Identities = 1040/1087 (96%), Gaps = 2/1087 (0%)
Strand=Plus/Plus
Query 42 AGTGTTTAACAATGGAATTGGATCTATCACCAAGGCTCCCGAAA-AAGGTGTACGGAGGA 100
||| |||||||||||| |||||||| ||||| ||| | || ||| |||||||||||||||
Sbjct 1 AGTCTTTAACAATGGAGTTGGATCTTTCACCGAGGTTGCC-AAAGAAGGTGTACGGAGGA 59
Query 101 GACGGTGGTTCGTACTTTGCATGGTGCCCTGAAGAGTTGCCAATGCTCCGAGATGGTAAC 160
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 60 GACGGTGGTTCGTACTTTGCATGGTGCCCTGAAGAGTTGTCAATGCTCCGAGATGGTAAC 119
Query 161 ATTGGAGCCTCTAAGCTCGCTCTTGAGAAGTATGGCTTGGCTCTTCCTCGCTACTCTGAC 220
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 120 ATTGGAGCCGCTAAGCTCGCTCTTGAGAAGTATGGCTTGGCTCTTCCTCGCTACTCTGAT 179
Query 221 TCCCCCAAGGTCGCTTATGTTCTTCAAGGAGCTGGAACAGCTGGAATCGTGCTCCCTGAG 280
|| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 180 TCTCCTAAGGTCGCTTATGTTCTTCAAGGAGCTGGAACAGCTGGAATCGTGCTCCCTGAG 239
Query 281 AAGGAGGAGAAAGTGATAGCAATCAAGAAAGGAGACTCCATAGCTTTACCTTTTGGTGTA 340
|| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 240 AAAGAGGAGAAAGTGATAGCAATCAAAAAAGGAGACTCCATAGCTTTACCTTTTGGTGTA 299
Query 341 GTGACATGGTGGTTCAACAATGAGGACACTGAGCTAGTCGTTCTCTTCCTTGGTGAGACT 400
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 300 GTGACATGGTGGTTCAACAATGAGGACACTGAGCTAGTCGTTCTCTTCCTCGGTGAGACT 359
Query 401 CACAAGGGTCACAAAGCTGGACAGTTCACCGACTTTTACCTAACCGGATCCAATGGAATC 460
||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||
Sbjct 360 CACAAGGGTCACAAAGCAGGACAGTTCACAGACTTTTACCTAACCGGATCCAATGGAATC 419
Query 461 TTCACCGGTTTCTCTACTGAGTTTGTTGGCAGAGCTTGGGATCTCGATGAGACCACCGTG 520
||||| || ||||| ||||||||||||||||||||||||||||| |||||| ||||||||
Sbjct 420 TTCACTGGATTCTCAACTGAGTTTGTTGGCAGAGCTTGGGATCTTGATGAGTCCACCGTG 479
Query 521 AAGAAGCTTGTCGGATCTCAGACAGGTAACGGTATCGTGAAGGTTGATGCGAGCTTGAAG 580
||||||||||| || |||||||| ||||| || |||||||||||||||||||||||||||
Sbjct 480 AAGAAGCTTGTTGGTTCTCAGACCGGTAATGGAATCGTGAAGGTTGATGCGAGCTTGAAG 539
Query 581 ATGCCTGAACCAAAGAAAGGTGACCGAAAAGGGTTTGTTTTGAACTGTTTGGAGGCTCCT 640
||||||| ||||||||||||||| || | |||||||| ||||| |||||||||||||||
Sbjct 540 ATGCCTGCACCAAAGAAAGGTGATCGTGATGGGTTTGTGTTGAATTGTTTGGAGGCTCCT 599
Query 641 CTTGATGTTGACATTAAGGATGGAGGAAGAGTTGTTGTGTTGAACACAAAGAATCTTCCT 700
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 600 CTTGATGTTGACATTAAGGATGGAGGAAGAGTTGTTGTGTTGAACACAAAGAATCTTCCT 659
Query 701 TTGGTTGGTGAAGTTGGATTTGGAGCTGATCTTGTGAGAATCGATGGACACTCTATGTGT 760
||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||
Sbjct 660 TTGGTTGGTGAAGTTGGTTTTGGAGCTGATCTTGTGAGAATCGATGGACATTCTATGTGT 719
Query 761 TCTCCTGGATTCTCTTGTGACTCGGCTCTTCAAGTTACTTACATTGTTGGTGGAAGTGGT 820
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 720 TCTCCTGGATTCTCTTGTGACTCGGCTCTTCAAGTTACTTACATTGTTGGTGGAAGTGGT 779
Query 821 CGTGTTCAGATTGTTGGTGCTGATGGGAAGAGAGTTCTTGAGACTCATGTGAAAGCTGGT 880
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 780 CGTGTTCAGATTGTTGGTGCTGATGGGAAGAGAGTTCTTGAGACTCATGTGAAAGCTGGT 839
Query 881 GTTTTGTTCATTGTTCCTAGGTTCTTTGTTGTCTCCAAGATTGCTGATTCTGATGGCTTG 940
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 840 GCTTTGTTCATTGTTCCTAGGTTCTTTGTTGTCTCCAAGATTGCTGATTCTGATGGCTTG 899
Query 941 TCTTGGTTCTCCATTGTGACCACTCCTGATCCAATATTCACTCATTTGGCCGGGAGGACT 1000
||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||
Sbjct 900 TCTTGGTTCTCCATTGTGACCACTCCTGATCCAATATTCACGCATTTGGCCGGTAGGACA 959
Query 1001 TCGGTGTGGAAGGCTTTGTCGCCGGAGGTTTTGCAGGCAGCGTTCAAGGTGGATCCCGAG 1060
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct 960 TCGGTGTGGAAGGCTTTGTCGCCGGAGGTTTTGCAGGCGGCGTTCAAGGTGGATCCGGAT 1019
Query 1061 GTTGAGAAGGCTTTCCGATCTAAGAGGACCTCTGATGCCATTTTCTTCTCTCCTTCCAAC 1120
|| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1020 GTGGAGAAGGCTTTCCGATCTAAGAGGACCTCTGATGCCATTTTCTTCCCTCCTTCCAAG 1079
Query 1121 TAGATAA 1127
|||||||
Sbjct 1080 TAGATAA 1086
> Ahg470808 jgi|Araly1|470808|fgenesh2_kg.1__762__AT1G07750.1
Length=1291
Score = 1129 bits (611), Expect = 0.0
Identities = 921/1074 (86%), Gaps = 8/1074 (1%)
Strand=Plus/Plus
Query 52 AATGGAATTGGATCTATCACC-AAGGCTCCCGAAAAAGGTGTACGGAGGAGACGGTGGTT 110
|||||| |||||||| ||||| || ||| ||||||||||| ||||||||||| ||||| |
Sbjct 40 AATGGAGTTGGATCTTTCACCGAA-GCTGCCGAAAAAGGTTTACGGAGGAGATGGTGGAT 98
Query 111 CGTACTTTGCATGGTGCCCTGAAGAGTTGCCAATGCTCCGAGATGGTAACATTGGAGCCT 170
| |||||||| |||||||| ||||||||||| ||||| | |||||||||||||||||
Sbjct 99 CTTACTTTGCGTGGTGCCCAGAAGAGTTGCCGATGCTTAAACATGGTAACATTGGAGCCG 158
Query 171 CTAAGCTCGCTCTTGAGAAGTATGGCTTGGCTCTTCCTCGCTACTCTGACTCCCCCAAGG 230
||||||| |||||||||||| ||||||| ||| | ||||| |||||||| ||| | ||||
Sbjct 159 CTAAGCTTGCTCTTGAGAAGCATGGCTTCGCTATCCCTCGTTACTCTGATTCCTCTAAGG 218
Query 231 TCGCTTATGTTCTTCAAGGAGCTGGAACAGCTGGAATCGTGCTCCCTGAGAAGGAGGAGA 290
|||||||||||||||||||| ||||||| |||||||| || ||||| ||| |||||||||
Sbjct 219 TCGCTTATGTTCTTCAAGGATCTGGAACTGCTGGAATTGTTCTCCCAGAGCAGGAGGAGA 278
Query 291 AAGTGATAGCAATCAAGAAAGGAGACTCCATAGCT-TTACCTTTTGGTGTAGTGACATGG 349
| ||||| ||||||||| |||| || || || ||| || || |||||||| || ||||||
Sbjct 279 AGGTGATCGCAATCAAGCAAGGTGATTCGATTGCTCTT-CCCTTTGGTGTGGTCACATGG 337
Query 350 TGGTTCAACAATGAGGACACTGAGCTAGTCGTTCTCTTCCTTGGTGAGACTCACAAGGGT 409
||||||||||| ||||| ||||||| || | |||||||||||||| || |||||||||
Sbjct 338 TGGTTCAACAACGAGGATGCTGAGCTTGTTATCCTCTTCCTTGGTGAAACCCACAAGGGT 397
Query 410 CACAAAGCTGGACAGTTCACCGACTTTTACCTAACCGGATCCAATGGAATCTTCACCGGT 469
|||||||| ||||||||||| || || || || || || || || || |||||||| |||
Sbjct 398 CACAAAGCAGGACAGTTCACTGAGTTCTATCTCACTGGCTCAAACGGTATCTTCACTGGT 457
Query 470 TTCTCTACTGAGTTTGTTGGCAGAGCTTGGGATCTCGATGAGACCACCGTGAAGAAGCTT 529
||||| ||||||||||| ||||||| |||||||| ||||||| |||||||||||| ||
Sbjct 458 TTCTCCACTGAGTTTGTAAGCAGAGCCTGGGATCTTGATGAGAACACCGTGAAGAAACTC 517
Query 530 GTCGGATCTCAGACAGGTAACGGTATCGTGAAGGTTGATGCGAGCTTGAAGATGCCTGAA 589
|| || ||||| || ||||| ||||| |||||| ||||||||||| | |||||||| |
Sbjct 518 GTTGGTTCTCAAACCGGTAATGGTATTGTGAAGCTTGATGCGAGCGTCAAGATGCCACAG 577
Query 590 CCAAAGAAAGGTG-ACCGAAAAGGGTTTGTTTTGAACTGTTTGGAGGCTCCTCTTGATGT 648
|| ||| |||| | |||| | |||||||| |||||||||||||||||||||||||||||
Sbjct 578 CCCAAG-AAGGAGCACCGTGATGGGTTTGTCTTGAACTGTTTGGAGGCTCCTCTTGATGT 636
Query 649 TGACATTAAGGATGGAGGAAGAGTTGTTGTGTTGAACACAAAGAATCTTCCTTTGGTTGG 708
|||||| ||||||||||| ||||| ||||| |||||||| ||||| ||||||||||||||
Sbjct 637 TGACATCAAGGATGGAGGCAGAGTCGTTGTCTTGAACACCAAGAACCTTCCTTTGGTTGG 696
Query 709 TGAAGTTGGATTTGGAGCTGATCTTGTGAGAATCGATGGACACTCTATGTGTTCTCCTGG 768
|| ||||| |||||||||||||||||||| || |||||||| || |||||||| |||||
Sbjct 697 AGAGGTTGGGTTTGGAGCTGATCTTGTGAGGATTGATGGACATTCCATGTGTTCGCCTGG 756
Query 769 ATTCTCTTGTGACTCGGCTCTTCAAGTTACTTACATTGTTGGTGGAAGTGGTCGTGTTCA 828
|||||||||||||| |||||||| || ||||||||||| ||||||||||| | || ||
Sbjct 757 TTTCTCTTGTGACTCTGCTCTTCAGGTGACTTACATTGTGGGTGGAAGTGGAAGAGTCCA 816
Query 829 GATTGTTGGTGCTGATGGGAAGAGAGTTCTTGAGACTCATGTGAAAGCTGGTGTTT-TGT 887
| | ||||| ||||||||||| |||||||||||||||||| | ||||||||| | | | |
Sbjct 817 GGTGGTTGGGGCTGATGGGAAAAGAGTTCTTGAGACTCATATCAAAGCTGGT-TCTCTCT 875
Query 888 TCATTGTTCCTAGGTTCTTTGTTGTCTCCAAGATTGCTGATTCTGATGGCTTGTCTTGGT 947
|||||||||| ||||||||||| || || ||||||||||||||||||||| |||||||||
Sbjct 876 TCATTGTTCCAAGGTTCTTTGTGGTGTCTAAGATTGCTGATTCTGATGGCATGTCTTGGT 935
Query 948 TCTCCATTGTGACCACTCCTGATCCAATATTCACTCATTTGGCCGGGAGGACTTCGGTGT 1007
|||||||||| ||||||||||||||||| ||||| ||||||||||| | ||| |||||||
Sbjct 936 TCTCCATTGTCACCACTCCTGATCCAATCTTCACACATTTGGCCGGAAAGACATCGGTGT 995
Query 1008 GGAAGGCTTTGTCGCCGGAGGTTTTGCAGGCAGCGTTCAAGGTGGATCCCGAGGTTGAGA 1067
||||||||||||| || |||||||||||||| ||||| ||||| ||||| || || ||||
Sbjct 996 GGAAGGCTTTGTCACCTGAGGTTTTGCAGGCGGCGTTTAAGGTTGATCCGGATGTGGAGA 1055
Query 1068 AGGCTTTCCGATCTAAGAGGACCTCTGATGCCATTTTCTTCTCTCCTTCCAACT 1121
|| | |||||||| |||||||| || || |||||||||||| |||| |||||||
Sbjct 1056 AGTCCTTCCGATCAAAGAGGACTTCAGACGCCATTTTCTTCCCTCCATCCAACT 1109
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47768015001
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5